Rroxscaffold_6G00402360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003801
Physical Location & Seq
Reverse (-)
24775145 .. 24776319
1175 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00402360.1

Sequence Viewer

Length: 291 bp
ATGCCCTCGCCTTCTTCAAGGAGACCAAGAAGAGGTTCAAGACCGGAAAGAGCAGGTGGTCTGAAGGTGGACGACCGGAATGAGGTCCAAGGTGACCTTGCAGTTGACGATAAAGATTCTGGTGTCTTGTTGGGCTCCTCCCGGTCACCAAAACTTTCAGTTTTCAAATCAATTTTAGATTTGGAGGTCAATTTCTCGATCAATTTTACATTTGTTTCAGCTTTAGAGTTTTCTTTTGGTGTTCCGGATAGATTAGGGCTTGATTTTATGCATTTGCGATTTGTGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.64

Weight (kDa)

8.21

Isoelectric Point (pI)

61.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 44
Acc36I ACCTGC 1 cut(s) 44
AccIII TCCGGA 1 cut(s) 244
AcuI CTGAAG 1 cut(s) 83
AfiI CCNNNNNNNGG 2 cut(s) 32, 82
AgsI TTSAA 3 cut(s) 18, 39, 166
AjuI GAANNNNNNNTTGG 2 cut(s) 19, 51
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
Alw26I GTCTC 1 cut(s) 16
Aor13HI TCCGGA 1 cut(s) 244
Asp700I GAANNNNTTC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 85
AsuC2I CCSGG 1 cut(s) 142
AsuHPI GGTGA 2 cut(s) 104, 138
AvaII GGWCC 1 cut(s) 85
BanII GRGCYC 1 cut(s) 137
BcnI CCSGG 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 16
BfuAI ACCTGC 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 142
BpuMI CCSGG 1 cut(s) 142
BsaI GGTCTC 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 88
BsaWI WCCGGW 3 cut(s) 43, 75, 244
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 82
BseAI TCCGGA 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 88
BseLI CCNNNNNNNGG 2 cut(s) 32, 82
BseRI GAGGAG 1 cut(s) 127
Bsh1285I CGRYCG 1 cut(s) 76
BsiEI CGRYCG 1 cut(s) 76
BsiSI CCGG 4 cut(s) 44, 76, 142, 245
BslI CCNNNNNNNGG 2 cut(s) 32, 82
BsmAI GTCTC 1 cut(s) 16
Bso31I GGTCTC 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 137
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 1 cut(s) 198
BspEI TCCGGA 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 136
BspMI ACCTGC 1 cut(s) 44
BspTNI GGTCTC 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 25
BstEII GGTNACC 2 cut(s) 92, 144
BstKTI GATC 1 cut(s) 201
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 1 cut(s) 198
BstMCI CGRYCG 1 cut(s) 76
BstPI GGTNACC 2 cut(s) 92, 144
BstSCI CCNGG 1 cut(s) 140
BveI ACCTGC 1 cut(s) 44
Cfr13I GGNCC 1 cut(s) 85
CviJI RGCY 3 cut(s) 135, 221, 259
CviKI_1 RGCY 3 cut(s) 135, 221, 259
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 137
Eco31I GGTCTC 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 83
Eco91I GGTNACC 2 cut(s) 92, 144
EcoO65I GGTNACC 2 cut(s) 92, 144
EcoT14I CCWWGG 1 cut(s) 88
EcoT22I ATGCAT 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 88
FaiI YATR 1 cut(s) 269
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FriOI GRGCYC 1 cut(s) 137
HapII CCGG 4 cut(s) 44, 76, 142, 245
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 1 cut(s) 116
HpaII CCGG 4 cut(s) 44, 76, 142, 245
HphI GGTGA 2 cut(s) 104, 138
Hpy166II GTNNAC 2 cut(s) 70, 106
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 3 cut(s) 39, 196, 245
Hpy8I GTNNAC 2 cut(s) 70, 106
HpyAV CCTTC 2 cut(s) 21, 58
HpyCH4V TGCA 2 cut(s) 101, 271
Kpn2I TCCGGA 1 cut(s) 244
Kzo9I GATC 1 cut(s) 198
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 6 cut(s) 39, 57, 89, 105, 155, 258
MaeIII GTNAC 2 cut(s) 92, 144
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MboII GAAGA 2 cut(s) 6, 42
MhlI GDGCHC 1 cut(s) 137
MluCI AATT 3 cut(s) 171, 190, 202
MnlI CCTC 5 cut(s) 16, 26, 76, 148, 178
Mph1103I ATGCAT 1 cut(s) 273
MroI TCCGGA 1 cut(s) 244
MroXI GAANNNNTTC 1 cut(s) 34
MseI TTAA 1 cut(s) 289
MspI CCGG 4 cut(s) 44, 76, 142, 245
MspR9I CCNGG 1 cut(s) 142
NciI CCSGG 1 cut(s) 142
NdeII GATC 1 cut(s) 198
NlaIV GGNNCC 1 cut(s) 136
NmuCI GTSAC 2 cut(s) 92, 144
NsiI ATGCAT 1 cut(s) 273
PaqCI CACCTGC 1 cut(s) 44
PdmI GAANNNNTTC 1 cut(s) 34
PfeI GAWTC 1 cut(s) 116
PspEI GGTNACC 2 cut(s) 92, 144
PspN4I GGNNCC 1 cut(s) 136
PspPI GGNCC 1 cut(s) 85
SaqAI TTAA 1 cut(s) 289
Sau3AI GATC 1 cut(s) 198
Sau96I GGNCC 1 cut(s) 85
ScrFI CCNGG 1 cut(s) 142
SduI GDGCHC 1 cut(s) 137
SetI ASST 8 cut(s) 37, 58, 69, 87, 94, 99, 189, 223
SinI GGWCC 1 cut(s) 85
Sse9I AATT 3 cut(s) 171, 190, 202
StyD4I CCNGG 1 cut(s) 140
StyI CCWWGG 1 cut(s) 88
TaqI TCGA 1 cut(s) 197
TasI AATT 3 cut(s) 171, 190, 202
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 289
Tru9I TTAA 1 cut(s) 289
TseFI GTSAC 2 cut(s) 92, 144
Tsp45I GTSAC 2 cut(s) 92, 144
VpaK11BI GGWCC 1 cut(s) 85
XmnI GAANNNNTTC 1 cut(s) 34
Zsp2I ATGCAT 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.