AT3G27190

belongs to the uridine kinase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
10039198 .. 10043066
3869 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G27190.1

Sequence Viewer

Length: 1452 bp
ATGCCAGAAGATTCAACGGCGATTGACTATGTCATGGAGAAGGCATCGGGGCCTCACTTCTCCGGTCTTCGCCTTGACGGTCTTCTTTCTTCTCCGTCGAAATCCTCCGTCTCTTCTCCTTCTCACTTCCGTTTGAGTAATTCTTCTTTTTCGGCTACCGACGATCCCGCCGCTCCTCATCAGCCCTTCGTTATCGGAGTTACTGGTGGTACAGCTTCTGGTAAGACGACGGTATGTGACATGATAATCCAGCAACTTCATGATCATCGCATTGTTTTAGTTAACCAGGATTCGTTTTACCGTGGTTTGACATCTGAAGAACTTGAGCATGTACAAGAATACAATTTTGATCATCCTGATGCCTTTGACACTGAGCAGCTTTTGCATTGCGTTGACATACTCAAGAGTGGGCAACCCTATCAAATTCCAATTTATGACTTCAAGACCCATCAACGTAAAGTAGATGCTTTTCGCCAGGTCAATGCTTGTGATGTCATCATTTTGGAAGGGATTCTAGTTTTTCATGACTCACGAGTTCGGGACCTAATGAATATGAAGATCTTCGTTGACACAGATGCTGATGTGAGGCTTGCTCGCAGAATCAGGCGTGACACGGTTGAGAGGGGTAGGGATGTTGACTCTGTGCTTGAACAGTATGCAAAGTTTGTGAAGCCTGCGTTTGATGATTTTGTGCTCCCCTCAAAGAAATATGCTGATGTGATCATTCCACGAGGAGGTGACAATCACGTTGCAGTTGATTTGATTGTGCAACATATCCACACAAAACTTGGGCAACATGATCTCTGCAAAATCTACCCAAATGTTTTTGTTATTGAAACAACATTTCAGATAAGAGGCATGCACACTCTCATTCGAGAGAAGGACATATCAAAACATGACTTCGTGTTTTACTCAGATCGCCTCATTCGTTTGGTTGTGGAGCATGGTCTTGGCCATTTGCCTTTCACTGAGAAACAAGTAGTTACTCCGACAGGATCTGTGTATAGCGGTGTTGATTTCTGCAAGAAACTCTGTGGGGTCTCAGTCATTCGAAGTGGTGAAAGCATGGAAAACGCATTGCGCGCATGTTGCAAAGGGATTAAGATAGGGAAGATTCTCATCCATCGTGACGGAGACAATGGAATGCAGCTTATATACGAGAAGCTTCCAAGTGATATCTCCGAGCGTCATGTCCTGCTATTAGATCCTGTTTTAGGCACAGGTAACTCTGCAAATCAGGCGATAGAACTACTCATACAGAAAGGAGTACCTGAAGCCCACATTATATTCCTCAATCTTATCTCAGCGCCAGAAGGAATCCATTGCGTCTGCAAACGGTTCCCAAAGTTGAAGATTGTGACGTCAGAAATCGATCAGTGTCTGAACGAAGAGTTCAGGGTTATACCAGGCTTGGGTGAGTTTGGTGATCGCTACTTTGGTACCGACGAGTAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

483

Amino Acids

54.21

Weight (kDa)

5.93

Isoelectric Point (pI)

35.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRK PF00485 64 - 250 2e-48 Phosphoribulokinase / Uridine kinase family
UPRTase PF14681 280 - 481 2.1e-73 Uracil phosphoribosyltransferase
PRTase-CE PF24390 301 - 466 2.7e-06 PRTase-CE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1364
Acc65I GGTACC 1 cut(s) 1439
AccB1I GGYRCC 1 cut(s) 1439
AccBSI CCGCTC 1 cut(s) 173
AccII CGCG 1 cut(s) 1083
AciI CCGC 3 cut(s) 168, 171, 1008
AclWI GGATC 3 cut(s) 158, 1003, 1199
AcoI YGGCCR 1 cut(s) 952
AcsI RAATTY 1 cut(s) 423
AcuI CTGAAG 2 cut(s) 336, 1293
AcyI GRCGYC 1 cut(s) 1361
AfaI GTAC 4 cut(s) 211, 333, 1269, 1441
AfiI CCNNNNNNNGG 3 cut(s) 734, 1214, 1412
AgsI TTSAA 5 cut(s) 15, 442, 650, 836, 1351
AjnI CCWGG 3 cut(s) 285, 474, 1405
AluBI AGCT 4 cut(s) 215, 379, 1150, 1165
AluI AGCT 4 cut(s) 215, 379, 1150, 1165
Alw21I GWGCWC 1 cut(s) 696
Alw26I GTCTC 3 cut(s) 115, 1045, 1128
AlwI GGATC 3 cut(s) 158, 1003, 1199
AlwNI CAGNNNCTG 4 cut(s) 218, 578, 998, 1381
AoxI GGCC 2 cut(s) 50, 952
ApeKI GCWGC 2 cut(s) 376, 1147
ApoI RAATTY 1 cut(s) 423
Asp700I GAANNNNTTC 2 cut(s) 510, 560
Asp718I GGTACC 1 cut(s) 1439
AspLEI GCGC 3 cut(s) 1083, 1085, 1309
AspS9I GGNCC 2 cut(s) 50, 541
AsuHPI GGTGA 4 cut(s) 749, 1070, 1427, 1436
AsuII TTCGAA 1 cut(s) 1051
AvaII GGWCC 1 cut(s) 541
BaeI ACNNNNGTAYC 1 cut(s) 1423
BalI TGGCCA 1 cut(s) 954
BanI GGYRCC 1 cut(s) 1439
BauI CACGAG 2 cut(s) 531, 729
BbsI GAAGAC 2 cut(s) 59, 74
Bbv12I GWGCWC 1 cut(s) 696
BbvI GCAGC 2 cut(s) 388, 1159
BccI CCATC 2 cut(s) 456, 1131
BceAI ACGGC 1 cut(s) 33
BciT130I CCWGG 3 cut(s) 287, 476, 1407
BclI TGATCA 3 cut(s) 262, 349, 720
BcoDI GTCTC 3 cut(s) 115, 1045, 1128
BfaI CTAG 1 cut(s) 515
BfoI RGCGCY 1 cut(s) 1310
BglII AGATCT 1 cut(s) 558
BisI GCNGC 3 cut(s) 171, 377, 1148
BlsI GCNGC 3 cut(s) 172, 378, 1149
Bme1390I CCNGG 3 cut(s) 287, 476, 1407
Bme18I GGWCC 1 cut(s) 541
BmgT120I GGNCC 2 cut(s) 50, 541
BmiI GGNNCC 4 cut(s) 51, 542, 1340, 1441
BmrFI CCNGG 3 cut(s) 287, 476, 1407
BmsI GCATC 4 cut(s) 53, 349, 454, 565
BpiI GAAGAC 2 cut(s) 59, 74
BplI GAGNNNNNCTC 2 cut(s) 577, 609
Bpu14I TTCGAA 1 cut(s) 1051
BpuEI CTTGAG 2 cut(s) 344, 386
Bsa29I ATCGAT 1 cut(s) 1371
BsaBI GATNNNNATC 1 cut(s) 1118
BsaHI GRCGYC 1 cut(s) 1361
BsaI GGTCTC 1 cut(s) 1045
BsaJI CCNNGG 1 cut(s) 301
BsaWI WCCGGW 1 cut(s) 62
Bsc4I CCNNNNNNNGG 3 cut(s) 734, 1214, 1412
Bse1I ACTGG 1 cut(s) 208
Bse3DI GCAATG 3 cut(s) 385, 1076, 1321
Bse8I GATNNNNATC 1 cut(s) 1118
BseBI CCWGG 3 cut(s) 287, 476, 1407
BseCI ATCGAT 1 cut(s) 1371
BseDI CCNNGG 1 cut(s) 301
BseGI GGATG 3 cut(s) 352, 637, 1119
BseJI GATNNNNATC 1 cut(s) 1118
BseLI CCNNNNNNNGG 3 cut(s) 734, 1214, 1412
BseMI GCAATG 3 cut(s) 385, 1076, 1321
BseMII CTCAG 5 cut(s) 363, 927, 960, 1056, 1317
BseNI ACTGG 1 cut(s) 208
BsePI GCGCGC 1 cut(s) 1081
BseRI GAGGAG 2 cut(s) 165, 747
BseXI GCAGC 2 cut(s) 388, 1159
Bsh1236I CGCG 1 cut(s) 1083
BshFI GGCC 2 cut(s) 52, 954
BshNI GGYRCC 1 cut(s) 1439
BshVI ATCGAT 1 cut(s) 1371
BsiHKAI GWGCWC 1 cut(s) 696
BsiSI CCGG 1 cut(s) 63
BslFI GGGAC 1 cut(s) 554
BslI CCNNNNNNNGG 3 cut(s) 734, 1214, 1412
BsmAI GTCTC 3 cut(s) 115, 1045, 1128
BsmBI CGTCTC 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 554
BsmI GAATGC 1 cut(s) 1149
BsnI GGCC 2 cut(s) 52, 954
Bso31I GGTCTC 1 cut(s) 1045
Bsp119I TTCGAA 1 cut(s) 1051
Bsp1286I GDGCHC 1 cut(s) 696
Bsp1407I TGTACA 1 cut(s) 331
BspACI CCGC 3 cut(s) 168, 171, 1008
BspANI GGCC 2 cut(s) 52, 954
BspCNI CTCAG 5 cut(s) 364, 926, 961, 1055, 1316
BspDI ATCGAT 1 cut(s) 1371
BspFNI CGCG 1 cut(s) 1083
BspHI TCATGA 2 cut(s) 259, 523
BspLI GGNNCC 4 cut(s) 51, 542, 1340, 1441
BspPI GGATC 3 cut(s) 158, 1003, 1199
BspT104I TTCGAA 1 cut(s) 1051
BspT107I GGYRCC 1 cut(s) 1439
BspTNI GGTCTC 1 cut(s) 1045
BsrBI CCGCTC 1 cut(s) 173
BsrDI GCAATG 3 cut(s) 385, 1076, 1321
BsrGI TGTACA 1 cut(s) 331
BsrI ACTGG 1 cut(s) 208
BssECI CCNNGG 1 cut(s) 301
BssHII GCGCGC 1 cut(s) 1081
BssNI GRCGYC 1 cut(s) 1361
BssSI CACGAG 2 cut(s) 531, 729
Bst2BI CACGAG 2 cut(s) 531, 729
Bst2UI CCWGG 3 cut(s) 287, 476, 1407
Bst4CI ACNGT 6 cut(s) 80, 232, 302, 616, 654, 1338
Bst6I CTCTTC 2 cut(s) 118, 1383
BstACI GRCGYC 1 cut(s) 1361
BstAPI GCANNNNNTGC 1 cut(s) 382
BstAUI TGTACA 1 cut(s) 331
BstBI TTCGAA 1 cut(s) 1051
BstC8I GCNNGC 5 cut(s) 591, 595, 675, 860, 1083
BstDEI CTNAG 5 cut(s) 372, 913, 969, 1042, 1303
BstDSI CCRYGG 1 cut(s) 301
BstENI CCTNNNNNAGG 1 cut(s) 1212
BstF5I GGATG 3 cut(s) 352, 637, 1119
BstFNI CGCG 1 cut(s) 1083
BstH2I RGCGCY 1 cut(s) 1310
BstHHI GCGC 3 cut(s) 1083, 1085, 1309
BstMAI GTCTC 3 cut(s) 115, 1045, 1128
BstMWI GCNNNNNNNGC 4 cut(s) 382, 1082, 1089, 1238
BstNI CCWGG 3 cut(s) 287, 476, 1407
BstNSI RCATGY 3 cut(s) 332, 862, 1089
BstSCI CCNGG 3 cut(s) 285, 474, 1405
BstUI CGCG 1 cut(s) 1083
BstV1I GCAGC 2 cut(s) 388, 1159
BstV2I GAAGAC 2 cut(s) 59, 74
BstX2I RGATCY 3 cut(s) 558, 995, 1204
BstYI RGATCY 3 cut(s) 558, 995, 1204
Bsu15I ATCGAT 1 cut(s) 1371
BsuRI GGCC 2 cut(s) 52, 954
BsuTUI ATCGAT 1 cut(s) 1371
BtgI CCRYGG 1 cut(s) 301
BtgZI GCGATG 1 cut(s) 251
BtsCI GGATG 3 cut(s) 352, 637, 1119
BtsIMutI CAGTG 3 cut(s) 369, 966, 1382
Cac8I GCNNGC 5 cut(s) 591, 595, 675, 860, 1083
CaiI CAGNNNCTG 4 cut(s) 218, 578, 998, 1381
CciI TCATGA 2 cut(s) 259, 523
CfoI GCGC 3 cut(s) 1083, 1085, 1309
Cfr13I GGNCC 2 cut(s) 50, 541
ClaI ATCGAT 1 cut(s) 1371
CseI GACGC 2 cut(s) 1175, 1315
Csp6I GTAC 4 cut(s) 210, 332, 1268, 1440
CviQI GTAC 4 cut(s) 210, 332, 1268, 1440
DdeI CTNAG 5 cut(s) 372, 913, 969, 1042, 1303
EaeI YGGCCR 1 cut(s) 952
Eam1104I CTCTTC 2 cut(s) 118, 1383
EarI CTCTTC 2 cut(s) 118, 1383
Eco31I GGTCTC 1 cut(s) 1045
Eco32I GATATC 1 cut(s) 1177
Eco47I GGWCC 1 cut(s) 541
Eco57I CTGAAG 2 cut(s) 336, 1293
EcoNI CCTNNNNNAGG 1 cut(s) 1212
EcoO109I RGGNCCY 2 cut(s) 50, 541
EcoRII CCWGG 3 cut(s) 285, 474, 1405
EcoRV GATATC 1 cut(s) 1177
Esp3I CGTCTC 1 cut(s) 115
FaqI GGGAC 1 cut(s) 554
FauI CCCGC 1 cut(s) 175
FbaI TGATCA 3 cut(s) 262, 349, 720
Fnu4HI GCNGC 3 cut(s) 171, 377, 1148
FokI GGATG 3 cut(s) 339, 644, 1106
Fsp4HI GCNGC 3 cut(s) 171, 377, 1148
FspBI CTAG 1 cut(s) 515
GlaI GCGC 3 cut(s) 1082, 1084, 1308
GluI GCNGC 3 cut(s) 171, 377, 1148
HaeII RGCGCY 1 cut(s) 1310
HaeIII GGCC 2 cut(s) 52, 954
HapII CCGG 1 cut(s) 63
HgaI GACGC 2 cut(s) 1175, 1315
HhaI GCGC 3 cut(s) 1083, 1085, 1309
Hin1I GRCGYC 1 cut(s) 1361
Hin6I GCGC 3 cut(s) 1081, 1083, 1307
HinP1I GCGC 3 cut(s) 1081, 1083, 1307
HincII GTYRAC 4 cut(s) 283, 394, 568, 637
HindII GTYRAC 4 cut(s) 283, 394, 568, 637
HindIII AAGCTT 1 cut(s) 1163
HinfI GANTC 8 cut(s) 11, 290, 511, 527, 600, 638, 1114, 1317
HpaI GTTAAC 1 cut(s) 283
HpaII CCGG 1 cut(s) 63
HphI GGTGA 4 cut(s) 749, 1070, 1427, 1436
Hpy166II GTNNAC 4 cut(s) 283, 394, 568, 637
Hpy188I TCNGA 8 cut(s) 197, 316, 849, 916, 990, 1183, 1366, 1383
Hpy188III TCNNGA 9 cut(s) 260, 356, 403, 442, 524, 531, 539, 875, 1127
Hpy8I GTNNAC 4 cut(s) 283, 394, 568, 637
Hpy99I CGWCG 4 cut(s) 100, 164, 232, 1448
HpyAV CCTTC 6 cut(s) 34, 129, 196, 500, 874, 1307
HpyCH4III ACNGT 6 cut(s) 80, 232, 302, 616, 654, 1338
HpyCH4IV ACGT 3 cut(s) 454, 747, 1361
HpyF10VI GCNNNNNNNGC 4 cut(s) 382, 1082, 1089, 1238
HpyF3I CTNAG 5 cut(s) 372, 913, 969, 1042, 1303
HpySE526I ACGT 3 cut(s) 454, 747, 1361
Hsp92I GRCGYC 1 cut(s) 1361
HspAI GCGC 3 cut(s) 1081, 1083, 1307
KpnI GGTACC 1 cut(s) 1443
Ksp22I TGATCA 3 cut(s) 262, 349, 720
KspAI GTTAAC 1 cut(s) 283
LmnI GCTCC 3 cut(s) 178, 699, 940
Lsp1109I GCAGC 2 cut(s) 388, 1159
LweI GCATC 4 cut(s) 53, 349, 454, 565
MaeI CTAG 1 cut(s) 515
MaeII ACGT 3 cut(s) 454, 747, 1361
MaeIII GTNAC 8 cut(s) 199, 236, 608, 737, 982, 1127, 1223, 1357
MbiI CCGCTC 1 cut(s) 173
MflI RGATCY 3 cut(s) 558, 995, 1204
MhlI GDGCHC 1 cut(s) 696
MlsI TGGCCA 1 cut(s) 954
MluCI AATT 4 cut(s) 139, 343, 423, 429
MluNI TGGCCA 1 cut(s) 954
MlyI GAGTC 2 cut(s) 521, 632
MmeI TCCRAC 1 cut(s) 1013
Mox20I TGGCCA 1 cut(s) 954
MroXI GAANNNNTTC 2 cut(s) 510, 560
MscI TGGCCA 1 cut(s) 954
MseI TTAA 2 cut(s) 282, 1101
MslI CAYNNNNRTG 1 cut(s) 357
Msp20I TGGCCA 1 cut(s) 954
MspI CCGG 1 cut(s) 63
MspR9I CCNGG 3 cut(s) 287, 476, 1407
Mva1269I GAATGC 1 cut(s) 1149
MvaI CCWGG 3 cut(s) 287, 476, 1407
MvnI CGCG 1 cut(s) 1083
MwoI GCNNNNNNNGC 4 cut(s) 382, 1082, 1089, 1238
NlaIV GGNNCC 4 cut(s) 51, 542, 1340, 1441
NmuCI GTSAC 5 cut(s) 236, 608, 737, 1127, 1357
NspI RCATGY 3 cut(s) 332, 862, 1089
NspV TTCGAA 1 cut(s) 1051
PaeI GCATGC 1 cut(s) 862
PagI TCATGA 2 cut(s) 259, 523
PauI GCGCGC 1 cut(s) 1081
PcsI WCGNNNNNNNCGW 1 cut(s) 925
PctI GAATGC 1 cut(s) 1149
PdmI GAANNNNTTC 2 cut(s) 510, 560
PfeI GAWTC 6 cut(s) 11, 290, 511, 600, 1114, 1317
PflFI GACNNNGTC 1 cut(s) 29
PkrI GCNGC 3 cut(s) 172, 378, 1149
PleI GAGTC 2 cut(s) 521, 632
PpsI GAGTC 2 cut(s) 521, 632
PpuMI RGGWCCY 1 cut(s) 541
Psp5II RGGWCCY 1 cut(s) 541
Psp6I CCWGG 3 cut(s) 285, 474, 1405
PspGI CCWGG 3 cut(s) 285, 474, 1405
PspN4I GGNNCC 4 cut(s) 51, 542, 1340, 1441
PspPI GGNCC 2 cut(s) 50, 541
PspPPI RGGWCCY 1 cut(s) 541
PsrI GAACNNNNNNTAC 2 cut(s) 1239, 1271
PstNI CAGNNNCTG 4 cut(s) 218, 578, 998, 1381
PsuI RGATCY 3 cut(s) 558, 995, 1204
PsyI GACNNNGTC 1 cut(s) 29
PteI GCGCGC 1 cut(s) 1081
RsaI GTAC 4 cut(s) 211, 333, 1269, 1441
RsaNI GTAC 4 cut(s) 210, 332, 1268, 1440
RseI CAYNNNNRTG 1 cut(s) 357
SaqAI TTAA 2 cut(s) 282, 1101
SatI GCNGC 3 cut(s) 171, 377, 1148
Sau96I GGNCC 2 cut(s) 50, 541
SchI GAGTC 2 cut(s) 521, 632
ScrFI CCNGG 3 cut(s) 287, 476, 1407
SduI GDGCHC 1 cut(s) 696
SfaNI GCATC 4 cut(s) 53, 349, 454, 565
SfuI TTCGAA 1 cut(s) 1051
SinI GGWCC 1 cut(s) 541
SmiMI CAYNNNNRTG 1 cut(s) 357
SmlI CTYRAG 2 cut(s) 323, 401
SmoI CTYRAG 2 cut(s) 323, 401
SphI GCATGC 1 cut(s) 862
Sse9I AATT 4 cut(s) 139, 343, 423, 429
SsiI CCGC 3 cut(s) 168, 171, 1008
SspMI CTAG 1 cut(s) 515
StyD4I CCNGG 3 cut(s) 285, 474, 1405
TaaI ACNGT 6 cut(s) 80, 232, 302, 616, 654, 1338
TaiI ACGT 3 cut(s) 457, 750, 1364
TaqI TCGA 4 cut(s) 98, 874, 1051, 1371
TasI AATT 4 cut(s) 139, 343, 423, 429
TatI WGTACW 1 cut(s) 331
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 6 cut(s) 11, 290, 511, 600, 1114, 1317
Tru1I TTAA 2 cut(s) 282, 1101
Tru9I TTAA 2 cut(s) 282, 1101
TscAI CASTG 3 cut(s) 376, 973, 1382
TseFI GTSAC 5 cut(s) 236, 608, 737, 1127, 1357
TseI GCWGC 2 cut(s) 376, 1147
Tsp45I GTSAC 5 cut(s) 236, 608, 737, 1127, 1357
TspDTI ATGAA 4 cut(s) 248, 512, 563, 569
TspGWI ACGGA 4 cut(s) 84, 97, 119, 1146
TspRI CASTG 3 cut(s) 376, 973, 1382
Tth111I GACNNNGTC 1 cut(s) 29
VpaK11BI GGWCC 1 cut(s) 541
XagI CCTNNNNNAGG 1 cut(s) 1212
XapI RAATTY 1 cut(s) 423
XceI RCATGY 3 cut(s) 332, 862, 1089
XcmI CCANNNNNNNNNTGG 1 cut(s) 785
XmnI GAANNNNTTC 2 cut(s) 510, 560
XspI CTAG 1 cut(s) 515
ZraI GACGTC 1 cut(s) 1362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.