MD09G1012900.v1.1

Belongs to the uridine kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0003508
Physical Location & Seq
Reverse (-)
807169 .. 811851
4683 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1012900.v1.1.491

Sequence Viewer

Length: 1422 bp
ATGTCGGAGAACGCGATGGCGATTGACTACGTGATGGAGAAAGCTTCTGGCCCCCACTTCTCGGGGCTCCGGTTCGACGGCATCCTTTCCTCTCCGCCACCTTCTTCGTCTCCCGGCCCTTCTACCAACCTCGCAGCCGACCCCCACGCCGCCAAACAGCCATTCGTCATCGGTGTTTCGGGCGGTACGGCTTCCGGTAAGACGACAGTGTGCGACATGATCATCCAGCAGCTTCACGATCATCGTGTCGTACTTGTCAATCAGGATTCATTTTATCGGGGTTTGACACCCGAGGAATCGGAACGAGTGCATGAGTATAATTTTGATCATCCTGACGCTTTTGACACCGAACAACTCTTGGATTGCATTCAAAAGCTAAAGAACGGGCAATCTGTCCAAGTTCCAATTTATGATTTTAAGACACATAGACGAAAATCTGATAGTTTCCGGCAGGTGAATGCTTCTGATGTAATAATCTTGGAAGGAATTCTGGTGTTCCATGACCAACATGTCCGCAATCTAATGAACATAAAGATTTTTGTCGATACAGATGCTGATGTGAGGCTTGCTCGTAGAATAAGACGAGACACGGTTGAGAGGGGCAGGGACATTAACTCTGTTCTTGAAATGTATGCCAAGTTCGTCAAACCTGCTTTTGATGATTTTGTTCACCCATCAAAGAAGTATGCTGATGTGATCATTCCCCAGGGAGGTGAGAATCATGTTGCCATTGATTTGATTGTGCAACATATTCGCACAAAGCTTGGTCAGCATGACCTCTGCAAAATATATCCTAATGTGTACATTATTCAGTCCACATTTCAGATAAGAGGTATGCATACACTGATTCGGGACCGAGAAATATCGAAACATGATTTTATATTTTATTCAGATCGGCTTATACGTCTGGTTGTGGAGCACGGCCTTGGCCATTTGCCATTCACAGAGAAGCAAATAATAACTCCAACAGTATATACTGGGGTGGATTTCTGCAAGAAACTGTGTGGGGTTTCAATCGTTCGAAGTGGTGAGAGCATGGAAAATGCACTACGTGCATGCTGCAAAGGAATAAAGATTGGAAAGATTCTGATTCACCGCGTTGGAGACAATGGAAAGCAGCTTATCTACGAGAAACTTCCAAAGGATATTTCAGAACGCCATGTCCTGCTTCTAGATCCAGTCCTTGCTACAGGTAACTCTGCTAACCAGGCGATTGAACTGCTCATACAGAAAGGAGTTCCTGAAGCGCATATTATTTTCCTAAACCTTATCTCTGCCCCTGAAGGAATCCATTGTGTTTCCCAACGGTTCCCGTCTTTGAAGATTGTCACTTCAGAGATCGATGTTGCGCTGAATGAAGAGTTCCGTGTCATACCAGGAATGGGTGAATTTGGTGATCGGTACTTTGGCACCGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004845 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006109 GO:0006139 GO:0006206 GO:0006207 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010138 GO:0010556 GO:0010675 GO:0010962 GO:0016301 GO:0016310 GO:0016740 GO:0016757 GO:0016763 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019222 GO:0019438 GO:0019637 GO:0019693 GO:0019856 GO:0031323 GO:0031326 GO:0032262 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043173 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0044206 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046112 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0050789 GO:0050794 GO:0055086 GO:0060255 GO:0065007 GO:0071704 GO:0072527 GO:0072528 GO:0080090 GO:0090407 GO:1900376 GO:1901135 GO:1901137 GO:1901141 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:2000112 GO:2000762 GO:2000904 GO:2001006
KEGG Pathways
Metabolic & Signaling
ko00030 ko00040 ko00240 ko00710 ko00983 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00240 map00710 map00983 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PRK UPRTase

Protein Analysis

474

Amino Acids

53.14

Weight (kDa)

6.4

Isoelectric Point (pI)

39.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRK PF00485 56 - 242 9.2e-50 Phosphoribulokinase / Uridine kinase family
UPRTase PF14681 272 - 471 1.7e-70 Uracil phosphoribosyltransferase
PRTase-CE PF24390 293 - 457 2.9e-06 PRTase-CE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 442
AasI GACNNNNNNGTC 1 cut(s) 509
Acc36I ACCTGC 2 cut(s) 442, 658
AccB1I GGYRCC 1 cut(s) 1409
AccII CGCG 2 cut(s) 14, 1098
AciI CCGC 5 cut(s) 95, 150, 183, 514, 1096
AclWI GGATC 1 cut(s) 1169
AcoI YGGCCR 1 cut(s) 928
AcsI RAATTY 2 cut(s) 486, 1388
AcuI CTGAAG 3 cut(s) 1263, 1302, 1317
AdeI CACNNNGTG 1 cut(s) 1052
AfaI GTAC 4 cut(s) 187, 252, 803, 1403
AfiI CCNNNNNNNGG 3 cut(s) 61, 710, 1382
AflIII ACRYGT 1 cut(s) 508
AgsI TTSAA 5 cut(s) 371, 626, 1014, 1217, 1321
AjnI CCWGG 3 cut(s) 705, 1206, 1375
AjuI GAANNNNNNNTTGG 4 cut(s) 146, 178, 1132, 1164
AloI GAACNNNNNNTCC 2 cut(s) 1146, 1178
AluBI AGCT 5 cut(s) 44, 232, 376, 763, 1120
AluI AGCT 5 cut(s) 44, 232, 376, 763, 1120
Alw21I GWGCWC 1 cut(s) 921
Alw26I GTCTC 3 cut(s) 114, 579, 1098
AlwI GGATC 1 cut(s) 1169
AlwNI CAGNNNCTG 1 cut(s) 554
Ama87I CYCGRG 2 cut(s) 61, 290
AoxI GGCC 4 cut(s) 49, 115, 922, 928
ApeKI GCWGC 4 cut(s) 134, 229, 1059, 1117
ApoI RAATTY 2 cut(s) 486, 1388
Asp700I GAANNNNTTC 1 cut(s) 486
AspLEI GCGC 2 cut(s) 1249, 1351
AspS9I GGNCC 3 cut(s) 50, 116, 853
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 7 cut(s) 466, 662, 725, 1040, 1085, 1397, 1406
AsuII TTCGAA 1 cut(s) 1021
AvaI CYCGRG 2 cut(s) 61, 290
AvaII GGWCC 1 cut(s) 853
BalI TGGCCA 1 cut(s) 930
BanI GGYRCC 1 cut(s) 1409
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 921
BbvI GCAGC 4 cut(s) 146, 241, 1046, 1129
BccI CCATC 3 cut(s) 10, 28, 682
BceAI ACGGC 3 cut(s) 94, 204, 937
BcgI CGANNNNNNTGC 6 cut(s) 533, 567, 734, 768, 1201, 1235
BciT130I CCWGG 3 cut(s) 707, 1208, 1377
BclI TGATCA 3 cut(s) 219, 325, 696
BcnI CCSGG 1 cut(s) 114
BcoDI GTCTC 3 cut(s) 114, 579, 1098
BfaI CTAG 1 cut(s) 1172
BfmI CTRYAG 1 cut(s) 1188
BfuAI ACCTGC 2 cut(s) 442, 658
BisI GCNGC 5 cut(s) 135, 150, 230, 1060, 1118
BlsI GCNGC 5 cut(s) 136, 151, 231, 1061, 1119
Bme1390I CCNGG 4 cut(s) 114, 707, 1208, 1377
Bme18I GGWCC 1 cut(s) 853
BmeT110I CYCGRG 2 cut(s) 61, 290
BmgT120I GGNCC 3 cut(s) 50, 116, 853
BmiI GGNNCC 5 cut(s) 52, 68, 854, 1310, 1411
BmrFI CCNGG 4 cut(s) 114, 707, 1208, 1377
BmrI ACTGGG 1 cut(s) 987
BmsI GCATC 2 cut(s) 90, 541
BmuI ACTGGG 1 cut(s) 987
BplI GAGNNNNNCTC 2 cut(s) 553, 585
Bpu14I TTCGAA 1 cut(s) 1021
BpuMI CCSGG 1 cut(s) 114
Bsa29I ATCGAT 1 cut(s) 1341
BsaAI YACGTR 2 cut(s) 31, 1052
BsaJI CCNNGG 4 cut(s) 291, 705, 706, 925
BsaWI WCCGGW 2 cut(s) 69, 194
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 710, 1382
Bse1I ACTGG 2 cut(s) 982, 1178
BseBI CCWGG 3 cut(s) 707, 1208, 1377
BseCI ATCGAT 1 cut(s) 1341
BseDI CCNNGG 4 cut(s) 291, 705, 706, 925
BseGI GGATG 3 cut(s) 81, 222, 328
BseLI CCNNNNNNNGG 3 cut(s) 61, 710, 1382
BseNI ACTGG 2 cut(s) 982, 1178
BseXI GCAGC 4 cut(s) 146, 241, 1046, 1129
Bsh1236I CGCG 2 cut(s) 14, 1098
BshFI GGCC 4 cut(s) 51, 117, 924, 930
BshNI GGYRCC 1 cut(s) 1409
BshVI ATCGAT 1 cut(s) 1341
BsiHKAI GWGCWC 1 cut(s) 921
BsiHKCI CYCGRG 2 cut(s) 61, 290
BsiSI CCGG 4 cut(s) 70, 114, 195, 448
BslFI GGGAC 2 cut(s) 620, 866
BslI CCNNNNNNNGG 3 cut(s) 61, 710, 1382
BsmAI GTCTC 3 cut(s) 114, 579, 1098
BsmBI CGTCTC 1 cut(s) 114
BsmFI GGGAC 2 cut(s) 620, 866
BsmI GAATGC 2 cut(s) 366, 463
BsnI GGCC 4 cut(s) 51, 117, 924, 930
BsoBI CYCGRG 2 cut(s) 61, 290
Bsp119I TTCGAA 1 cut(s) 1021
Bsp1286I GDGCHC 2 cut(s) 69, 921
Bsp1407I TGTACA 1 cut(s) 801
Bsp143I GATC 8 cut(s) 219, 238, 325, 696, 892, 1174, 1338, 1396
BspACI CCGC 5 cut(s) 95, 150, 183, 514, 1096
BspANI GGCC 4 cut(s) 51, 117, 924, 930
BspDI ATCGAT 1 cut(s) 1341
BspFNI CGCG 2 cut(s) 14, 1098
BspLI GGNNCC 5 cut(s) 52, 68, 854, 1310, 1411
BspMI ACCTGC 2 cut(s) 442, 658
BspPI GGATC 1 cut(s) 1169
BspT104I TTCGAA 1 cut(s) 1021
BspT107I GGYRCC 1 cut(s) 1409
BsrGI TGTACA 1 cut(s) 801
BsrI ACTGG 2 cut(s) 982, 1178
BssECI CCNNGG 4 cut(s) 291, 705, 706, 925
BssMI GATC 8 cut(s) 219, 238, 325, 696, 892, 1174, 1338, 1396
BssT1I CCWWGG 1 cut(s) 925
Bst2UI CCWGG 3 cut(s) 707, 1208, 1377
Bst4CI ACNGT 5 cut(s) 208, 592, 970, 1002, 1308
Bst6I CTCTTC 1 cut(s) 1353
BstAPI GCANNNNNTGC 1 cut(s) 1052
BstAUI TGTACA 1 cut(s) 801
BstBAI YACGTR 2 cut(s) 31, 1052
BstBI TTCGAA 1 cut(s) 1021
BstC8I GCNNGC 2 cut(s) 567, 1057
BstF5I GGATG 3 cut(s) 81, 222, 328
BstFNI CGCG 2 cut(s) 14, 1098
BstHHI GCGC 2 cut(s) 1249, 1351
BstKTI GATC 8 cut(s) 222, 241, 328, 699, 895, 1177, 1341, 1399
BstMAI GTCTC 3 cut(s) 114, 579, 1098
BstMBI GATC 8 cut(s) 219, 238, 325, 696, 892, 1174, 1338, 1396
BstMWI GCNNNNNNNGC 3 cut(s) 769, 1052, 1208
BstNI CCWGG 3 cut(s) 707, 1208, 1377
BstNSI RCATGY 2 cut(s) 512, 1059
BstSCI CCNGG 4 cut(s) 112, 705, 1206, 1375
BstSFI CTRYAG 1 cut(s) 1188
BstUI CGCG 2 cut(s) 14, 1098
BstV1I GCAGC 4 cut(s) 146, 241, 1046, 1129
BstX2I RGATCY 1 cut(s) 1174
BstYI RGATCY 1 cut(s) 1174
Bsu15I ATCGAT 1 cut(s) 1341
BsuRI GGCC 4 cut(s) 51, 117, 924, 930
BsuTUI ATCGAT 1 cut(s) 1341
BtgZI GCGATG 1 cut(s) 29
BtsCI GGATG 3 cut(s) 81, 222, 328
BtsIMutI CAGTG 2 cut(s) 213, 842
BveI ACCTGC 2 cut(s) 442, 658
Cac8I GCNNGC 2 cut(s) 567, 1057
CaiI CAGNNNCTG 1 cut(s) 554
CfoI GCGC 2 cut(s) 1249, 1351
Cfr13I GGNCC 3 cut(s) 50, 116, 853
ClaI ATCGAT 1 cut(s) 1341
CseI GACGC 1 cut(s) 344
Csp6I GTAC 4 cut(s) 186, 251, 802, 1402
CviQI GTAC 4 cut(s) 186, 251, 802, 1402
DpnI GATC 8 cut(s) 221, 240, 327, 698, 894, 1176, 1340, 1398
DpnII GATC 8 cut(s) 219, 238, 325, 696, 892, 1174, 1338, 1396
DraIII CACNNNGTG 1 cut(s) 1052
DrdI GACNNNNNNGTC 1 cut(s) 509
DseDI GACNNNNNNGTC 1 cut(s) 509
EaeI YGGCCR 1 cut(s) 928
Eam1104I CTCTTC 1 cut(s) 1353
EarI CTCTTC 1 cut(s) 1353
EciI GGCGGA 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 925
Eco24I GRGCYC 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 853
Eco57I CTGAAG 3 cut(s) 1263, 1302, 1317
Eco88I CYCGRG 2 cut(s) 61, 290
EcoRI GAATTC 1 cut(s) 486
EcoRII CCWGG 3 cut(s) 705, 1206, 1375
EcoT14I CCWWGG 1 cut(s) 925
EcoT22I ATGCAT 1 cut(s) 840
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 925
Esp3I CGTCTC 1 cut(s) 114
FaqI GGGAC 2 cut(s) 620, 866
FbaI TGATCA 3 cut(s) 219, 325, 696
Fnu4HI GCNGC 5 cut(s) 135, 150, 230, 1060, 1118
FokI GGATG 3 cut(s) 68, 209, 315
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 5 cut(s) 135, 150, 230, 1060, 1118
FspBI CTAG 1 cut(s) 1172
GlaI GCGC 2 cut(s) 1248, 1350
GluI GCNGC 5 cut(s) 135, 150, 230, 1060, 1118
HaeIII GGCC 4 cut(s) 51, 117, 924, 930
HapII CCGG 4 cut(s) 70, 114, 195, 448
HgaI GACGC 1 cut(s) 344
HhaI GCGC 2 cut(s) 1249, 1351
Hin6I GCGC 2 cut(s) 1247, 1349
HinP1I GCGC 2 cut(s) 1247, 1349
HindIII AAGCTT 2 cut(s) 42, 761
HinfI GANTC 7 cut(s) 266, 296, 718, 847, 1084, 1090, 1287
HpaII CCGG 4 cut(s) 70, 114, 195, 448
HphI GGTGA 7 cut(s) 466, 662, 725, 1040, 1085, 1397, 1406
Hpy166II GTNNAC 3 cut(s) 670, 802, 816
Hpy188I TCNGA 9 cut(s) 7, 301, 439, 466, 825, 892, 1089, 1153, 1336
Hpy188III TCNNGA 7 cut(s) 236, 263, 332, 623, 851, 1172, 1241
Hpy8I GTNNAC 3 cut(s) 670, 802, 816
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 4 cut(s) 111, 129, 476, 1277
HpyCH4III ACNGT 5 cut(s) 208, 592, 970, 1002, 1308
HpyCH4IV ACGT 3 cut(s) 30, 904, 1051
HpyCH4V TGCA 9 cut(s) 310, 366, 745, 783, 838, 993, 1046, 1055, 1062
HpyF10VI GCNNNNNNNGC 3 cut(s) 769, 1052, 1208
HpySE526I ACGT 3 cut(s) 30, 904, 1051
HspAI GCGC 2 cut(s) 1247, 1349
Ksp22I TGATCA 3 cut(s) 219, 325, 696
Kzo9I GATC 8 cut(s) 219, 238, 325, 696, 892, 1174, 1338, 1396
LmnI GCTCC 2 cut(s) 72, 916
Lsp1109I GCAGC 4 cut(s) 146, 241, 1046, 1129
LweI GCATC 2 cut(s) 90, 541
MaeI CTAG 1 cut(s) 1172
MaeII ACGT 3 cut(s) 30, 904, 1051
MaeIII GTNAC 2 cut(s) 1193, 1327
MalI GATC 8 cut(s) 221, 240, 327, 698, 894, 1176, 1340, 1398
MboI GATC 8 cut(s) 219, 238, 325, 696, 892, 1174, 1338, 1396
MboII GAAGA 3 cut(s) 96, 1333, 1370
MflI RGATCY 1 cut(s) 1174
MhlI GDGCHC 2 cut(s) 69, 921
MlsI TGGCCA 1 cut(s) 930
MluCI AATT 4 cut(s) 319, 405, 486, 1388
MluNI TGGCCA 1 cut(s) 930
MmeI TCCRAC 2 cut(s) 989, 1081
MnlI CCTC 8 cut(s) 100, 140, 286, 555, 591, 704, 788, 824
Mox20I TGGCCA 1 cut(s) 930
Mph1103I ATGCAT 1 cut(s) 840
MroXI GAANNNNTTC 1 cut(s) 486
MscI TGGCCA 1 cut(s) 930
MseI TTAA 2 cut(s) 417, 612
Msp20I TGGCCA 1 cut(s) 930
MspI CCGG 4 cut(s) 70, 114, 195, 448
MspR9I CCNGG 4 cut(s) 114, 707, 1208, 1377
Mva1269I GAATGC 2 cut(s) 366, 463
MvaI CCWGG 3 cut(s) 707, 1208, 1377
MvnI CGCG 2 cut(s) 14, 1098
MwoI GCNNNNNNNGC 3 cut(s) 769, 1052, 1208
NciI CCSGG 1 cut(s) 114
NdeII GATC 8 cut(s) 219, 238, 325, 696, 892, 1174, 1338, 1396
NlaIV GGNNCC 5 cut(s) 52, 68, 854, 1310, 1411
NmuCI GTSAC 1 cut(s) 1327
NsiI ATGCAT 1 cut(s) 840
NspI RCATGY 2 cut(s) 512, 1059
NspV TTCGAA 1 cut(s) 1021
PaeI GCATGC 1 cut(s) 1059
PaqCI CACCTGC 1 cut(s) 442
PasI CCCWGGG 1 cut(s) 706
PciI ACATGT 1 cut(s) 508
PcsI WCGNNNNNNNCGW 2 cut(s) 11, 901
PctI GAATGC 2 cut(s) 366, 463
PdmI GAANNNNTTC 1 cut(s) 486
PfeI GAWTC 7 cut(s) 266, 296, 718, 847, 1084, 1090, 1287
PkrI GCNGC 5 cut(s) 136, 151, 231, 1061, 1119
Ppu21I YACGTR 2 cut(s) 31, 1052
PscI ACATGT 1 cut(s) 508
Psp6I CCWGG 3 cut(s) 705, 1206, 1375
PspGI CCWGG 3 cut(s) 705, 1206, 1375
PspN4I GGNNCC 5 cut(s) 52, 68, 854, 1310, 1411
PspPI GGNCC 3 cut(s) 50, 116, 853
PsrI GAACNNNNNNTAC 4 cut(s) 623, 655, 1209, 1241
PstNI CAGNNNCTG 1 cut(s) 554
PsuI RGATCY 1 cut(s) 1174
RsaI GTAC 4 cut(s) 187, 252, 803, 1403
RsaNI GTAC 4 cut(s) 186, 251, 802, 1402
SaqAI TTAA 2 cut(s) 417, 612
SatI GCNGC 5 cut(s) 135, 150, 230, 1060, 1118
Sau3AI GATC 8 cut(s) 219, 238, 325, 696, 892, 1174, 1338, 1396
Sau96I GGNCC 3 cut(s) 50, 116, 853
ScrFI CCNGG 4 cut(s) 114, 707, 1208, 1377
SduI GDGCHC 2 cut(s) 69, 921
SfaNI GCATC 2 cut(s) 90, 541
SfcI CTRYAG 1 cut(s) 1188
SfuI TTCGAA 1 cut(s) 1021
SinI GGWCC 1 cut(s) 853
SphI GCATGC 1 cut(s) 1059
Sse9I AATT 4 cut(s) 319, 405, 486, 1388
SsiI CCGC 5 cut(s) 95, 150, 183, 514, 1096
SspMI CTAG 1 cut(s) 1172
StyD4I CCNGG 4 cut(s) 112, 705, 1206, 1375
StyI CCWWGG 1 cut(s) 925
TaaI ACNGT 5 cut(s) 208, 592, 970, 1002, 1308
TaiI ACGT 3 cut(s) 33, 907, 1054
TaqI TCGA 5 cut(s) 75, 543, 866, 1021, 1341
TaqII GACCGA 1 cut(s) 870
TasI AATT 4 cut(s) 319, 405, 486, 1388
TatI WGTACW 1 cut(s) 801
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 7 cut(s) 266, 296, 718, 847, 1084, 1090, 1287
Tru1I TTAA 2 cut(s) 417, 612
Tru9I TTAA 2 cut(s) 417, 612
TscAI CASTG 2 cut(s) 213, 849
TseFI GTSAC 1 cut(s) 1327
TseI GCWGC 4 cut(s) 134, 229, 1059, 1117
Tsp45I GTSAC 1 cut(s) 1327
TspDTI ATGAA 3 cut(s) 258, 539, 1371
TspGWI ACGGA 1 cut(s) 1355
TspRI CASTG 2 cut(s) 213, 849
VpaK11BI GGWCC 1 cut(s) 853
XapI RAATTY 2 cut(s) 486, 1388
XbaI TCTAGA 1 cut(s) 1171
XceI RCATGY 2 cut(s) 512, 1059
XmnI GAANNNNTTC 1 cut(s) 486
XspI CTAG 1 cut(s) 1172
Zsp2I ATGCAT 1 cut(s) 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.