Rh2BG674300

belongs to the uridine kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003508
Physical Location & Seq
Forward (+)
88589800 .. 88590585
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG674300.1

Sequence Viewer

Length: 387 bp
ATGGAAAATGCATTACGTGCATGTTGCAAAGGAATAAAAATTGGGAAGATCTTGATTCATCGTGATGGAGACGATGGCAAACAGCTTATATATGAGAAGCTCCCCAAGGATATTTCAGAGCGTCATGTCCTGCTGCTAGACCCTGTACTTGCTACAGGTAATTCTGCTAACCAGGCTATTGAACTACTCATACAGAAGGGGGTTCCTGAATCACATATAATATTCTTAAACCTTATATCTGCTCCTGAGGGAATTCATTGTGTTTACAAACGATTTCCATCCTTGAAGATCGTCACTTCAGAGATTGATATTGCCCTCAATGAAGAATTTCGTGTCATACCAGGGTTGGGTGAATTTGGGGATCGTTACTTCGGCACAGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004845 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006109 GO:0006139 GO:0006206 GO:0006207 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010138 GO:0010556 GO:0010675 GO:0010962 GO:0016301 GO:0016310 GO:0016740 GO:0016757 GO:0016763 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019222 GO:0019438 GO:0019637 GO:0019693 GO:0019856 GO:0031323 GO:0031326 GO:0032262 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043173 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0044206 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046112 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0050789 GO:0050794 GO:0055086 GO:0060255 GO:0065007 GO:0071704 GO:0072527 GO:0072528 GO:0080090 GO:0090407 GO:1900376 GO:1901135 GO:1901137 GO:1901141 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:2000112 GO:2000762 GO:2000904 GO:2001006
KEGG Pathways
Metabolic & Signaling
ko00030 ko00040 ko00240 ko00710 ko00983 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00240 map00710 map00983 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PRK UPRTase

Protein Analysis

128

Amino Acids

14.24

Weight (kDa)

5.55

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPRTase PF14681 1 - 126 4.1e-47 Uracil phosphoribosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 369
AcsI RAATTY 3 cut(s) 252, 326, 353
AcuI CTGAAG 1 cut(s) 282
AfaI GTAC 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 347
AgsI TTSAA 2 cut(s) 182, 286
AjnI CCWGG 2 cut(s) 171, 340
AluBI AGCT 2 cut(s) 85, 100
AluI AGCT 2 cut(s) 85, 100
Alw26I GTCTC 1 cut(s) 63
AlwI GGATC 1 cut(s) 369
ApeKI GCWGC 1 cut(s) 133
ApoI RAATTY 3 cut(s) 252, 326, 353
Asp700I GAANNNNTTC 1 cut(s) 327
AsuHPI GGTGA 1 cut(s) 362
AxyI CCTNAGG 1 cut(s) 246
BbvI GCAGC 1 cut(s) 120
BccI CCATC 3 cut(s) 59, 68, 286
BciT130I CCWGG 2 cut(s) 173, 342
BcoDI GTCTC 1 cut(s) 63
BfaI CTAG 1 cut(s) 137
BfmI CTRYAG 1 cut(s) 153
BglII AGATCT 1 cut(s) 48
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
Bme1390I CCNGG 2 cut(s) 173, 342
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 2 cut(s) 173, 342
BsaAI YACGTR 1 cut(s) 17
BsaBI GATNNNNATC 1 cut(s) 277
BsaJI CCNNGG 2 cut(s) 105, 341
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse21I CCTNAGG 1 cut(s) 246
Bse8I GATNNNNATC 1 cut(s) 277
BseBI CCWGG 2 cut(s) 173, 342
BseDI CCNNGG 2 cut(s) 105, 341
BseGI GGATG 1 cut(s) 278
BseJI GATNNNNATC 1 cut(s) 277
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMII CTCAG 1 cut(s) 237
BseXI GCAGC 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 1 cut(s) 63
BsmBI CGTCTC 1 cut(s) 63
Bsp143I GATC 3 cut(s) 48, 288, 361
BspCNI CTCAG 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 204
BspPI GGATC 1 cut(s) 369
BssECI CCNNGG 2 cut(s) 105, 341
BssMI GATC 3 cut(s) 48, 288, 361
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 2 cut(s) 173, 342
BstAPI GCANNNNNTGC 1 cut(s) 17
BstBAI YACGTR 1 cut(s) 17
BstDEI CTNAG 1 cut(s) 246
BstF5I GGATG 1 cut(s) 278
BstKTI GATC 3 cut(s) 51, 291, 364
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 3 cut(s) 48, 288, 361
BstMWI GCNNNNNNNGC 2 cut(s) 17, 173
BstNI CCWGG 2 cut(s) 173, 342
BstNSI RCATGY 1 cut(s) 24
BstSCI CCNGG 2 cut(s) 171, 340
BstSFI CTRYAG 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 120
BstX2I RGATCY 1 cut(s) 48
BstYI RGATCY 1 cut(s) 48
Bsu36I CCTNAGG 1 cut(s) 246
BtsCI GGATG 1 cut(s) 278
CseI GACGC 1 cut(s) 110
Csp6I GTAC 1 cut(s) 146
CviAII CATG 2 cut(s) 21, 125
CviJI RGCY 3 cut(s) 85, 100, 176
CviKI_1 RGCY 3 cut(s) 85, 100, 176
CviQI GTAC 1 cut(s) 146
DdeI CTNAG 1 cut(s) 246
DpnI GATC 3 cut(s) 50, 290, 363
DpnII GATC 3 cut(s) 48, 288, 361
Eco130I CCWWGG 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 282
Eco81I CCTNAGG 1 cut(s) 246
EcoRI GAATTC 1 cut(s) 252
EcoRII CCWGG 2 cut(s) 171, 340
EcoT14I CCWWGG 1 cut(s) 105
EcoT22I ATGCAT 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 105
Esp3I CGTCTC 1 cut(s) 63
FaeI CATG 2 cut(s) 24, 128
FatI CATG 2 cut(s) 20, 124
Fnu4HI GCNGC 1 cut(s) 134
FokI GGATG 1 cut(s) 265
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 1 cut(s) 137
GluI GCNGC 1 cut(s) 134
HgaI GACGC 1 cut(s) 110
Hin1II CATG 2 cut(s) 24, 128
HinfI GANTC 2 cut(s) 55, 209
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 2 cut(s) 118, 301
Hpy188III TCNNGA 4 cut(s) 52, 62, 206, 245
Hpy8I GTNNAC 1 cut(s) 265
HpyAV CCTTC 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 3 cut(s) 11, 20, 27
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 173
HpyF3I CTNAG 1 cut(s) 246
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 2 cut(s) 24, 128
Kzo9I GATC 3 cut(s) 48, 288, 361
LmnI GCTCC 2 cut(s) 105, 247
LpnPI CCDG 9 cut(s) 141, 143, 156, 158, 185, 219, 258, 327, 354
Lsp1109I GCAGC 1 cut(s) 120
MaeI CTAG 1 cut(s) 137
MaeII ACGT 1 cut(s) 16
MaeIII GTNAC 2 cut(s) 292, 365
MalI GATC 3 cut(s) 50, 290, 363
MboI GATC 3 cut(s) 48, 288, 361
MboII GAAGA 3 cut(s) 58, 298, 335
MflI RGATCY 1 cut(s) 48
MluCI AATT 5 cut(s) 39, 160, 252, 326, 353
MnlI CCTC 2 cut(s) 241, 326
Mph1103I ATGCAT 1 cut(s) 13
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 1 cut(s) 227
MslI CAYNNNNRTG 1 cut(s) 63
MspR9I CCNGG 2 cut(s) 173, 342
MvaI CCWGG 2 cut(s) 173, 342
MwoI GCNNNNNNNGC 2 cut(s) 17, 173
NdeII GATC 3 cut(s) 48, 288, 361
NlaIII CATG 2 cut(s) 24, 128
NlaIV GGNNCC 1 cut(s) 204
NmuCI GTSAC 1 cut(s) 292
NsiI ATGCAT 1 cut(s) 13
NspI RCATGY 1 cut(s) 24
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 2 cut(s) 55, 209
PkrI GCNGC 1 cut(s) 135
Ppu21I YACGTR 1 cut(s) 17
Psp6I CCWGG 2 cut(s) 171, 340
PspGI CCWGG 2 cut(s) 171, 340
PspN4I GGNNCC 1 cut(s) 204
PsrI GAACNNNNNNTAC 2 cut(s) 174, 206
PsuI RGATCY 1 cut(s) 48
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
RseI CAYNNNNRTG 1 cut(s) 63
SaqAI TTAA 1 cut(s) 227
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 3 cut(s) 48, 288, 361
ScrFI CCNGG 2 cut(s) 173, 342
SetI ASST 5 cut(s) 19, 87, 102, 160, 234
SfcI CTRYAG 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 63
Sse9I AATT 5 cut(s) 39, 160, 252, 326, 353
SspI AATATT 1 cut(s) 222
SspMI CTAG 1 cut(s) 137
StyD4I CCNGG 2 cut(s) 171, 340
StyI CCWWGG 1 cut(s) 105
TaiI ACGT 1 cut(s) 19
TasI AATT 5 cut(s) 39, 160, 252, 326, 353
TatI WGTACW 1 cut(s) 145
TfiI GAWTC 2 cut(s) 55, 209
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 3 cut(s) 47, 245, 336
XapI RAATTY 3 cut(s) 252, 326, 353
XceI RCATGY 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 1 cut(s) 137
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.