pycom17g01080

Belongs to the uridine kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0003508
Physical Location & Seq
Reverse (-)
750892 .. 754099
3208 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g01080.7

Sequence Viewer

Length: 906 bp
ATGAACATTAAGATTTTTGTCGATACAGATGCTGATGTGAGGCTTGCTCGTAGAATAAGACGAGACACAGTTGAGAGGGGCAGAGACATTAACTCTGTTCTTGAAATGTATGCTAAGTTCGTCAAACCTGCTTTTGATGATTTTATTCACCCATCAAAGAAGTATGCTGATGTGATCATTCCCCGTGGGGGTGATAATCATGTTGCCATTGATTTGATTGTGCAACATATTCGCACAAAGCTTGGTCAAGACGATCTCTGCAAAATATATCCTAATGTGTACGTTATTCAGTCAACATTTCAGATTAGAGGTATGCATACACTGATTCGAGACCGAGAAATATCGAAGCATGATTTTGTGTTTTATTCAGATCGGCTAATACGTCTGGTTGTGGAGCACGGCCTTGGCCATTTGCCATTCACAGAGAAGCAAGTAGTAACTCCAACAGCATCAGTATATACCGGGGTGGATTTCTGCAAGAAACTGTGTGGGGTTTCAATTGTTCGAAGTGGTGAGAGCATGGAAAATGCATTACGTGCATGCTGCAAAGGAATAAAGATTGGAAAGATTCTGATTCACCGTGATGGAGACAATGGAAAGCAGCTTATTTACGAGAAACTTCCAACGGATATTTCAGAACGTCATGTCCTGCTTCTAGATCCAGTCCTTGCTACAGGTAACTCTGCTAACCAGGCAATTGAACTACTCATACAGAAAGGAGTTCCTGAAGCCCATATTATTTTCTTAAACCTTATTTCTGCCCCTGAAGGAATCCATTGTGTTTCCAAACGGTTTCCATCTTTGAAGATTGTGACCTCGGAGATTGATGTTGCGCTGAATGAAGAGTTCCGTGTCATACCAGGACTGGGTGAATTTGGTGATCGATACTTTGGCACCGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004845 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006109 GO:0006139 GO:0006206 GO:0006207 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010138 GO:0010556 GO:0010675 GO:0010962 GO:0016301 GO:0016310 GO:0016740 GO:0016757 GO:0016763 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019222 GO:0019438 GO:0019637 GO:0019693 GO:0019856 GO:0031323 GO:0031326 GO:0032262 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043173 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0044206 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046112 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0050789 GO:0050794 GO:0055086 GO:0060255 GO:0065007 GO:0071704 GO:0072527 GO:0072528 GO:0080090 GO:0090407 GO:1900376 GO:1901135 GO:1901137 GO:1901141 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:2000112 GO:2000762 GO:2000904 GO:2001006
KEGG Pathways
Metabolic & Signaling
ko00030 ko00040 ko00240 ko00710 ko00983 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00240 map00710 map00983 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PRK UPRTase

Protein Analysis

302

Amino Acids

33.94

Weight (kDa)

7.17

Isoelectric Point (pI)

32.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 136
AccB1I GGYRCC 1 cut(s) 893
AclWI GGATC 1 cut(s) 653
AcoI YGGCCR 1 cut(s) 406
AcsI RAATTY 1 cut(s) 872
AcuI CTGAAG 2 cut(s) 747, 786
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 2 cut(s) 188, 866
AgsI TTSAA 4 cut(s) 104, 498, 701, 805
AjnI CCWGG 2 cut(s) 690, 859
AjuI GAANNNNNNNTTGG 2 cut(s) 616, 648
AloI GAACNNNNNNTCC 2 cut(s) 630, 662
AluBI AGCT 2 cut(s) 241, 604
AluI AGCT 2 cut(s) 241, 604
Alw21I GWGCWC 1 cut(s) 399
Alw26I GTCTC 4 cut(s) 57, 78, 324, 582
AlwI GGATC 1 cut(s) 653
AlwNI CAGNNNCTG 1 cut(s) 32
AoxI GGCC 2 cut(s) 400, 406
ApeKI GCWGC 2 cut(s) 543, 601
ApoI RAATTY 1 cut(s) 872
AspLEI GCGC 1 cut(s) 835
AsuC2I CCSGG 1 cut(s) 463
AsuHPI GGTGA 6 cut(s) 140, 203, 524, 569, 881, 890
AsuII TTCGAA 1 cut(s) 505
BalI TGGCCA 1 cut(s) 408
BanI GGYRCC 1 cut(s) 893
Bbv12I GWGCWC 1 cut(s) 399
BbvI GCAGC 2 cut(s) 530, 613
BccI CCATC 3 cut(s) 160, 578, 805
BceAI ACGGC 1 cut(s) 415
BcgI CGANNNNNNTGC 4 cut(s) 11, 45, 212, 246
BciT130I CCWGG 2 cut(s) 692, 861
BclI TGATCA 1 cut(s) 174
BcnI CCSGG 1 cut(s) 463
BcoDI GTCTC 4 cut(s) 57, 78, 324, 582
BfaI CTAG 1 cut(s) 656
BfmI CTRYAG 1 cut(s) 672
BfuAI ACCTGC 1 cut(s) 136
BisI GCNGC 2 cut(s) 544, 602
BlsI GCNGC 2 cut(s) 545, 603
Bme1390I CCNGG 3 cut(s) 463, 692, 861
BmiI GGNNCC 1 cut(s) 895
BmrFI CCNGG 3 cut(s) 463, 692, 861
BmrI ACTGGG 1 cut(s) 875
BmsI GCATC 2 cut(s) 19, 458
BmuI ACTGGG 1 cut(s) 875
BplI GAGNNNNNCTC 2 cut(s) 31, 63
Bpu14I TTCGAA 1 cut(s) 505
BpuMI CCSGG 1 cut(s) 463
Bsa29I ATCGAT 1 cut(s) 883
BsaAI YACGTR 1 cut(s) 536
BsaI GGTCTC 1 cut(s) 324
BsaJI CCNNGG 4 cut(s) 184, 403, 462, 816
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 866
Bse1I ACTGG 2 cut(s) 662, 870
BseBI CCWGG 2 cut(s) 692, 861
BseCI ATCGAT 1 cut(s) 883
BseDI CCNNGG 4 cut(s) 184, 403, 462, 816
BseLI CCNNNNNNNGG 2 cut(s) 188, 866
BseNI ACTGG 2 cut(s) 662, 870
BseXI GCAGC 2 cut(s) 530, 613
BshFI GGCC 2 cut(s) 402, 408
BshNI GGYRCC 1 cut(s) 893
BshVI ATCGAT 1 cut(s) 883
BsiHKAI GWGCWC 1 cut(s) 399
BsiSI CCGG 1 cut(s) 462
BslI CCNNNNNNNGG 2 cut(s) 188, 866
BsmAI GTCTC 4 cut(s) 57, 78, 324, 582
BsnI GGCC 2 cut(s) 402, 408
Bso31I GGTCTC 1 cut(s) 324
Bsp119I TTCGAA 1 cut(s) 505
Bsp1286I GDGCHC 1 cut(s) 399
Bsp143I GATC 5 cut(s) 174, 253, 370, 658, 880
BspANI GGCC 2 cut(s) 402, 408
BspDI ATCGAT 1 cut(s) 883
BspLI GGNNCC 1 cut(s) 895
BspMI ACCTGC 1 cut(s) 136
BspPI GGATC 1 cut(s) 653
BspT104I TTCGAA 1 cut(s) 505
BspT107I GGYRCC 1 cut(s) 893
BspTNI GGTCTC 1 cut(s) 324
BsrI ACTGG 2 cut(s) 662, 870
BssECI CCNNGG 4 cut(s) 184, 403, 462, 816
BssMI GATC 5 cut(s) 174, 253, 370, 658, 880
BssT1I CCWWGG 1 cut(s) 403
Bst2UI CCWGG 2 cut(s) 692, 861
Bst4CI ACNGT 4 cut(s) 70, 486, 581, 792
Bst6I CTCTTC 1 cut(s) 837
BstAPI GCANNNNNTGC 1 cut(s) 536
BstBAI YACGTR 1 cut(s) 536
BstBI TTCGAA 1 cut(s) 505
BstC8I GCNNGC 2 cut(s) 45, 541
BstDEI CTNAG 1 cut(s) 114
BstDSI CCRYGG 1 cut(s) 184
BstHHI GCGC 1 cut(s) 835
BstKTI GATC 5 cut(s) 177, 256, 373, 661, 883
BstMAI GTCTC 4 cut(s) 57, 78, 324, 582
BstMBI GATC 5 cut(s) 174, 253, 370, 658, 880
BstMWI GCNNNNNNNGC 2 cut(s) 536, 692
BstNI CCWGG 2 cut(s) 692, 861
BstNSI RCATGY 1 cut(s) 543
BstSCI CCNGG 3 cut(s) 461, 690, 859
BstSFI CTRYAG 1 cut(s) 672
BstV1I GCAGC 2 cut(s) 530, 613
BstX2I RGATCY 1 cut(s) 658
BstYI RGATCY 1 cut(s) 658
Bsu15I ATCGAT 1 cut(s) 883
BsuRI GGCC 2 cut(s) 402, 408
BsuTUI ATCGAT 1 cut(s) 883
BtgI CCRYGG 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 320
BveI ACCTGC 1 cut(s) 136
Cac8I GCNNGC 2 cut(s) 45, 541
CaiI CAGNNNCTG 1 cut(s) 32
CfoI GCGC 1 cut(s) 835
ClaI ATCGAT 1 cut(s) 883
Csp6I GTAC 1 cut(s) 280
CviAII CATG 5 cut(s) 200, 350, 520, 540, 644
CviJI RGCY 7 cut(s) 43, 241, 376, 402, 408, 604, 731
CviKI_1 RGCY 7 cut(s) 43, 241, 376, 402, 408, 604, 731
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 1 cut(s) 114
DpnI GATC 5 cut(s) 176, 255, 372, 660, 882
DpnII GATC 5 cut(s) 174, 253, 370, 658, 880
EaeI YGGCCR 1 cut(s) 406
Eam1104I CTCTTC 1 cut(s) 837
EarI CTCTTC 1 cut(s) 837
Eco130I CCWWGG 1 cut(s) 403
Eco31I GGTCTC 1 cut(s) 324
Eco57I CTGAAG 2 cut(s) 747, 786
EcoRII CCWGG 2 cut(s) 690, 859
EcoT14I CCWWGG 1 cut(s) 403
EcoT22I ATGCAT 2 cut(s) 318, 532
ErhI CCWWGG 1 cut(s) 403
FaeI CATG 5 cut(s) 203, 353, 523, 543, 647
FatI CATG 5 cut(s) 199, 349, 519, 539, 643
FbaI TGATCA 1 cut(s) 174
Fnu4HI GCNGC 2 cut(s) 544, 602
Fsp4HI GCNGC 2 cut(s) 544, 602
FspBI CTAG 1 cut(s) 656
GlaI GCGC 1 cut(s) 834
GluI GCNGC 2 cut(s) 544, 602
HaeIII GGCC 2 cut(s) 402, 408
HapII CCGG 1 cut(s) 462
HhaI GCGC 1 cut(s) 835
Hin1II CATG 5 cut(s) 203, 353, 523, 543, 647
Hin6I GCGC 1 cut(s) 833
HinP1I GCGC 1 cut(s) 833
HincII GTYRAC 1 cut(s) 294
HindII GTYRAC 1 cut(s) 294
HindIII AAGCTT 1 cut(s) 239
HinfI GANTC 4 cut(s) 325, 568, 574, 771
HpaII CCGG 1 cut(s) 462
HphI GGTGA 6 cut(s) 140, 203, 524, 569, 881, 890
Hpy166II GTNNAC 2 cut(s) 280, 294
Hpy188I TCNGA 5 cut(s) 303, 370, 573, 637, 820
Hpy188III TCNNGA 5 cut(s) 101, 248, 329, 656, 725
Hpy8I GTNNAC 2 cut(s) 280, 294
HpyAV CCTTC 1 cut(s) 761
HpyCH4III ACNGT 4 cut(s) 70, 486, 581, 792
HpyCH4IV ACGT 4 cut(s) 282, 382, 535, 640
HpyCH4V TGCA 7 cut(s) 223, 261, 316, 477, 530, 539, 546
HpyF10VI GCNNNNNNNGC 2 cut(s) 536, 692
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 4 cut(s) 282, 382, 535, 640
Hsp92II CATG 5 cut(s) 203, 353, 523, 543, 647
HspAI GCGC 1 cut(s) 833
Ksp22I TGATCA 1 cut(s) 174
Kzo9I GATC 5 cut(s) 174, 253, 370, 658, 880
LmnI GCTCC 1 cut(s) 394
Lsp1109I GCAGC 2 cut(s) 530, 613
LweI GCATC 2 cut(s) 19, 458
MaeI CTAG 1 cut(s) 656
MaeII ACGT 4 cut(s) 282, 382, 535, 640
MaeIII GTNAC 3 cut(s) 436, 677, 811
MalI GATC 5 cut(s) 176, 255, 372, 660, 882
MboI GATC 5 cut(s) 174, 253, 370, 658, 880
MboII GAAGA 2 cut(s) 817, 854
MfeI CAATTG 2 cut(s) 498, 696
MflI RGATCY 1 cut(s) 658
MhlI GDGCHC 1 cut(s) 399
MlsI TGGCCA 1 cut(s) 408
MluCI AATT 3 cut(s) 498, 696, 872
MluNI TGGCCA 1 cut(s) 408
MmeI TCCRAC 2 cut(s) 467, 647
MnlI CCTC 4 cut(s) 33, 69, 302, 826
Mox20I TGGCCA 1 cut(s) 408
Mph1103I ATGCAT 2 cut(s) 318, 532
MscI TGGCCA 1 cut(s) 408
MseI TTAA 4 cut(s) 9, 90, 746, 904
MslI CAYNNNNRTG 1 cut(s) 582
Msp20I TGGCCA 1 cut(s) 408
MspI CCGG 1 cut(s) 462
MspR9I CCNGG 3 cut(s) 463, 692, 861
MunI CAATTG 2 cut(s) 498, 696
MvaI CCWGG 2 cut(s) 692, 861
MwoI GCNNNNNNNGC 2 cut(s) 536, 692
NciI CCSGG 1 cut(s) 463
NdeII GATC 5 cut(s) 174, 253, 370, 658, 880
NlaIII CATG 5 cut(s) 203, 353, 523, 543, 647
NlaIV GGNNCC 1 cut(s) 895
NmuCI GTSAC 1 cut(s) 811
NsiI ATGCAT 2 cut(s) 318, 532
NspI RCATGY 1 cut(s) 543
NspV TTCGAA 1 cut(s) 505
PaeI GCATGC 1 cut(s) 543
PcsI WCGNNNNNNNCGW 1 cut(s) 379
PfeI GAWTC 4 cut(s) 325, 568, 574, 771
PkrI GCNGC 2 cut(s) 545, 603
Ppu21I YACGTR 1 cut(s) 536
Psp6I CCWGG 2 cut(s) 690, 859
PspGI CCWGG 2 cut(s) 690, 859
PspN4I GGNNCC 1 cut(s) 895
PsrI GAACNNNNNNTAC 4 cut(s) 101, 133, 693, 725
PstNI CAGNNNCTG 1 cut(s) 32
PsuI RGATCY 1 cut(s) 658
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
RseI CAYNNNNRTG 1 cut(s) 582
SaqAI TTAA 4 cut(s) 9, 90, 746, 904
SatI GCNGC 2 cut(s) 544, 602
Sau3AI GATC 5 cut(s) 174, 253, 370, 658, 880
ScrFI CCNGG 3 cut(s) 463, 692, 861
SduI GDGCHC 1 cut(s) 399
SfaNI GCATC 2 cut(s) 19, 458
SfcI CTRYAG 1 cut(s) 672
SfuI TTCGAA 1 cut(s) 505
SmiMI CAYNNNNRTG 1 cut(s) 582
SphI GCATGC 1 cut(s) 543
Sse9I AATT 3 cut(s) 498, 696, 872
SspMI CTAG 1 cut(s) 656
StyD4I CCNGG 3 cut(s) 461, 690, 859
StyI CCWWGG 1 cut(s) 403
TaaI ACNGT 4 cut(s) 70, 486, 581, 792
TaiI ACGT 4 cut(s) 285, 385, 538, 643
TaqI TCGA 5 cut(s) 21, 328, 344, 505, 883
TaqII GACCGA 1 cut(s) 348
TasI AATT 3 cut(s) 498, 696, 872
TfiI GAWTC 4 cut(s) 325, 568, 574, 771
Tru1I TTAA 4 cut(s) 9, 90, 746, 904
Tru9I TTAA 4 cut(s) 9, 90, 746, 904
TscAI CASTG 1 cut(s) 327
TseFI GTSAC 1 cut(s) 811
TseI GCWGC 2 cut(s) 543, 601
Tsp45I GTSAC 1 cut(s) 811
TspDTI ATGAA 2 cut(s) 17, 855
TspGWI ACGGA 2 cut(s) 641, 839
TspRI CASTG 1 cut(s) 327
XapI RAATTY 1 cut(s) 872
XbaI TCTAGA 1 cut(s) 655
XceI RCATGY 1 cut(s) 543
XspI CTAG 1 cut(s) 656
Zsp2I ATGCAT 2 cut(s) 318, 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.