Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003508

Physical Location & Seq

Genomic Coordinates Forward (+)

48299548 .. 48300388

Gene Structure 841 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0377700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGCATTCATTAAAAGCACATATTATTTTTGATAGCATTATCAATGGGACCTCCGCAACAAGTGCAAAAGAAGAGGGAAAGGATGTGGGAAATTATGACAAATGGAGTAATGAAGAGAGCAATGAGTTACTGCAGGTCTTAGTTGACGCTGCCAAACGTGGTTGGCGCGATCCTCAAAGTGGTTTGATAGGCAAAAAAACAGTTGAGAGCAAAATACTTCCACCCTTTAATAAAAAAACTAGGCTCCGGCTTTGGGTGAGACCCATCACGAAGAGAATCACCGCTAGTGATGAAGTATGGGAAGATTACTTCAAGGCACACCCAAAACAAAGAAGCCTTCGTAACCAGATTTGCATAGACTATGAGGATTTGAAAATTGCAGTGGGAAACAGAACTGCAACAGGAAAGTTTTCAATTAGCCTGGGCGATGATACTGATGCAACCACATACATGGTTGAGGAAAGTGAAAGTGGTGCTTTGGATGACTTGGTCTATAACAAAAATGCTGATGCATTCATACCAGCAGGGGATGAATCATCATTCCAAGGTTATCCACCACCGCCATCATCCTTATCTTTTGAGGGCACGAATGTGGGAGTTCCTAATAACAATGCGGAAAAGAATATTGGAAGTAGTGCAACTGGAAAACGCAACAGGAATGAGTTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

223

Amino Acids

24.74

Weight (kDa)

5.56

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27190 AT5G40870
fragaria_vesca	FvH4_6g53220
malus_domestica	MD09G1012900.v1.1 MD17G1013500.v1.1
prunus_persica	Prupe.3G304300_v2.0.a1
pyrus_communis	pycom111g01070 pycom17g01080
rosa_chinensis	RchiOBHm_Chr2g0143031 RchiOBHm_Chr2g0143071 RchiOBHm_Chr2g0175311
rosa_laevigata	RLG00000020006 RLG00000022319
rosa_multiflora	Rmu_sc0003512.1_g000003
rosa_roxburghii	Rroxscaffold_2G00077440 Rroxscaffold_2G00102120 Rroxscaffold_2G00102150
rosa_rugosa	Rorug02G0377700 Rorug02G0582700
rosa_samantha	Rh2AG401300 Rh2AG430800 Rh2AG663000 Rh2AG663400 Rh2BG197300 Rh2BG439700 Rh2BG674200 Rh2BG674300 Rh2CG387500 Rh2CG416500 Rh2CG637300 Rh2DG450000 Rh5AG496000
rosa_wichuraiana	Rw2G035190 Rw2G035210 Rw2G054360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	124
AccII	CGCG	1 cut(s)	168
AciI	CCGC	4 cut(s)	54, 282, 560, 614
AclWI	GGATC	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	179, 253
AgsI	TTSAA	4 cut(s)	313, 373, 414, 668
AjnI	CCWGG	1 cut(s)	420
AjuI	GAANNNNNNNTTGG	2 cut(s)	609, 641
AleI	CACNNNNGTG	1 cut(s)	590
Alw26I	GTCTC	1 cut(s)	253
AlwI	GGATC	1 cut(s)	164
ApeKI	GCWGC	1 cut(s)	149
Asp700I	GAANNNNTTC	1 cut(s)	409
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	48
AsuHPI	GGTGA	2 cut(s)	268, 271
AvaII	GGWCC	1 cut(s)	48
BaeGI	GKGCMC	1 cut(s)	587
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	2 cut(s)	272, 571
BciT130I	CCWGG	1 cut(s)	422
BcoDI	GTCTC	1 cut(s)	253
BfaI	CTAG	2 cut(s)	240, 285
BfmI	CTRYAG	1 cut(s)	131
BfuAI	ACCTGC	1 cut(s)	124
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	422
Bme18I	GGWCC	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	48
BmiI	GGNNCC	2 cut(s)	49, 245
BmrFI	CCNGG	1 cut(s)	422
BmsI	GCATC	2 cut(s)	427, 499
BsaI	GGTCTC	1 cut(s)	253
BsaJI	CCNNGG	2 cut(s)	421, 544
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 253
Bse1I	ACTGG	1 cut(s)	646
Bse3DI	GCAATG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	422
BseDI	CCNNGG	2 cut(s)	421, 544
BseGI	GGATG	4 cut(s)	88, 487, 535, 566
BseLI	CCNNNNNNNGG	2 cut(s)	179, 253
BseMI	GCAATG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	646
BseSI	GKGCMC	1 cut(s)	587
BseXI	GCAGC	1 cut(s)	136
Bsh1236I	CGCG	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	247
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	2 cut(s)	179, 253
BsmAI	GTCTC	1 cut(s)	253
BsmFI	GGGAC	1 cut(s)	61
BsmI	GAATGC	2 cut(s)	4, 512
Bso31I	GGTCTC	1 cut(s)	253
Bsp1286I	GDGCHC	1 cut(s)	587
Bsp143I	GATC	1 cut(s)	169
BspACI	CCGC	4 cut(s)	54, 282, 560, 614
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	49, 245
BspMAI	CTGCAG	1 cut(s)	135
BspMI	ACCTGC	1 cut(s)	124
BspPI	GGATC	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	253
BsrDI	GCAATG	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	646
BssECI	CCNNGG	2 cut(s)	421, 544
BssMI	GATC	1 cut(s)	169
BssT1I	CCWWGG	1 cut(s)	544
Bst2UI	CCWGG	1 cut(s)	422
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	3 cut(s)	66, 108, 266
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	139
BstF5I	GGATG	4 cut(s)	88, 487, 535, 566
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNI	CCWGG	1 cut(s)	422
BstSCI	CCNGG	1 cut(s)	420
BstSFI	CTRYAG	1 cut(s)	131
BstSLI	GKGCMC	1 cut(s)	587
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	136
BstXI	CCANNNNNNTGG	1 cut(s)	451
BtgZI	GCGATG	1 cut(s)	441
BtsCI	GGATG	4 cut(s)	88, 487, 535, 566
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	1 cut(s)	387
BveI	ACCTGC	1 cut(s)	124
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	48
CseI	GACGC	1 cut(s)	155
CviAII	CATG	1 cut(s)	451
CviJI	RGCY	4 cut(s)	244, 250, 336, 420
CviKI_1	RGCY	4 cut(s)	244, 250, 336, 420
DdeI	CTNAG	1 cut(s)	139
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
Eam1104I	CTCTTC	3 cut(s)	66, 108, 266
EarI	CTCTTC	3 cut(s)	66, 108, 266
Eco130I	CCWWGG	1 cut(s)	544
Eco31I	GGTCTC	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	48
EcoO109I	RGGNCCY	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	420
EcoT14I	CCWWGG	1 cut(s)	544
EcoT22I	ATGCAT	2 cut(s)	6, 514
ErhI	CCWWGG	1 cut(s)	544
FaeI	CATG	1 cut(s)	454
FaiI	YATR	9 cut(s)	21, 96, 298, 356, 363, 448, 452, 495, 518
FalI	AAGNNNNNCTT	2 cut(s)	460, 492
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	1 cut(s)	450
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	4 cut(s)	95, 494, 542, 553
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	2 cut(s)	240, 285
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	1 cut(s)	150
HapII	CCGG	1 cut(s)	247
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	1 cut(s)	454
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	2 cut(s)	276, 533
HpaII	CCGG	1 cut(s)	247
HphI	GGTGA	2 cut(s)	268, 271
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188III	TCNNGA	1 cut(s)	268
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	1 cut(s)	347
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	9 cut(s)	4, 65, 133, 354, 380, 398, 440, 512, 638
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	139
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	1 cut(s)	454
HspAI	GCGC	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	249
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	2 cut(s)	427, 499
MaeI	CTAG	2 cut(s)	240, 285
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	2 cut(s)	126, 341
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	4 cut(s)	83, 125, 283, 314
MhlI	GDGCHC	1 cut(s)	587
MluCI	AATT	3 cut(s)	91, 375, 414
MnlI	CCTC	6 cut(s)	61, 67, 183, 358, 451, 574
Mph1103I	ATGCAT	2 cut(s)	6, 514
MroXI	GAANNNNTTC	1 cut(s)	409
MseI	TTAA	2 cut(s)	11, 228
MslI	CAYNNNNRTG	2 cut(s)	449, 590
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	1 cut(s)	422
Mva1269I	GAATGC	2 cut(s)	4, 512
MvaI	CCWGG	1 cut(s)	422
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	1 cut(s)	454
NlaIV	GGNNCC	2 cut(s)	49, 245
NsiI	ATGCAT	2 cut(s)	6, 514
OliI	CACNNNNGTG	1 cut(s)	590
PctI	GAATGC	2 cut(s)	4, 512
PdmI	GAANNNNTTC	1 cut(s)	409
PfeI	GAWTC	2 cut(s)	276, 533
PflFI	GACNNNGTC	1 cut(s)	488
PkrI	GCNGC	1 cut(s)	151
PpuMI	RGGWCCY	1 cut(s)	48
Psp5II	RGGWCCY	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	420
PspGI	CCWGG	1 cut(s)	420
PspN4I	GGNNCC	2 cut(s)	49, 245
PspPI	GGNCC	1 cut(s)	48
PspPPI	RGGWCCY	1 cut(s)	48
PstI	CTGCAG	1 cut(s)	135
PsyI	GACNNNGTC	1 cut(s)	488
RseI	CAYNNNNRTG	2 cut(s)	449, 590
SaqAI	TTAA	2 cut(s)	11, 228
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	1 cut(s)	169
Sau96I	GGNCC	1 cut(s)	48
ScrFI	CCNGG	1 cut(s)	422
SduI	GDGCHC	1 cut(s)	587
SetI	ASST	4 cut(s)	53, 138, 160, 550
SfaNI	GCATC	2 cut(s)	427, 499
SfcI	CTRYAG	1 cut(s)	131
SinI	GGWCC	1 cut(s)	48
SmiMI	CAYNNNNRTG	2 cut(s)	449, 590
Sse9I	AATT	3 cut(s)	91, 375, 414
SsiI	CCGC	4 cut(s)	54, 282, 560, 614
SspI	AATATT	1 cut(s)	625
SspMI	CTAG	2 cut(s)	240, 285
StyD4I	CCNGG	1 cut(s)	420
StyI	CCWWGG	1 cut(s)	544
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	1 cut(s)	160
TasI	AATT	3 cut(s)	91, 375, 414
TfiI	GAWTC	2 cut(s)	276, 533
Tru1I	TTAA	2 cut(s)	11, 228
Tru9I	TTAA	2 cut(s)	11, 228
TscAI	CASTG	1 cut(s)	387
TseI	GCWGC	1 cut(s)	149
TspDTI	ATGAA	4 cut(s)	126, 306, 505, 546
TspRI	CASTG	1 cut(s)	387
Tth111I	GACNNNGTC	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	48
XmnI	GAANNNNTTC	1 cut(s)	409
XspI	CTAG	2 cut(s)	240, 285
Zsp2I	ATGCAT	2 cut(s)	6, 514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.