Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003508

Physical Location & Seq

Genomic Coordinates Reverse (-)

59911759 .. 59919387

Gene Structure 7629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020006

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3774 bp

ATGCAGGAGGAGACGAAGACCACCGTTGACTACCGGATGGAGAGAGCGTCCGGGCCCCACTTCTCGGGCCTCCGACTCGACGGCCTCTTATCTTCTTCGCCTTCTTCTTCTTCTTCATCACCTTCGCCTGCCGCGGATTCTTCAAACCTAGCCGACTCCAACGCCGCCAAGCAGCCCTTCGTCATCGGTGTTTCTGGAGGTACGGCTTCCGGTAAGACCACTGTGTGCGACATGATCATCCAGCAGCTTCACGATCATCGCGTCGTTCTTGTCAATCAGGATTCATTTTACCGTGGTTTGACACCTGAGGAGTCTGAACGAGTTCATGAGTATAATTTTGATCATCCTGACGCATTTGACACCGAACAGATGTTAGAATGTGTTCAAAAGCTAAAGTGCGGGCAGTCTGTCCAAGTTCCAATTTATGATTTTAAGATACATCGACGCCGTTCTGATACTTTTCGGCAGGTGAATGCTTCTGATGTCATAATCCTGGAGGGGATTCTCGTTTTCCATGACCAGCGTGTCCGTAAATTGATGAACATGAAGATTTTTGTCGACACAGATGCTGATGTCAGACTTGCTCGTAGAATAAGACGAGACACTGTTGAGAGGGGCAGGGACATTGACTCTGTTCTTGAGCAGTATGCCAAGTTTGTCAAGCCTGCTTTTGATGATTTTGTTCTCCCCTCAAAGAAGTATGCTGATGTGATCATTCCCCGGGGAGGCGATAACCATGTTGCTATTGATTTAATTGTACAACATATTCGGACAAAGCTTGGTCAGCATGACCTTTGCAAAATATATCCTAATGTGTATGTTATACAGTCCACATTCCAGATTAGAGGCATGCATACACTGATTCGAGACCGAGATATATCAAAGCATGATTTTGTATTTTATTCGGATCGCCTAATCCGATCTGTGTATACTGGGGTTGATTTCTGCAAGAAATTATGTGGAGTTTCAATTGTTCGAAGTGGTGAGAGCATGGAAAATGCATTACGTGCATGTTGCAAAGGAATAAAAATTGGGAAGATCTTGATTCATCGTGAGGGAGACGATGGCAAACAGCTTATATATGAGAAGCTCCCCAAGGATATTTCAGAGCGTCATGTCCTGCTTCTAGACCCTGTACTTGCTACAGGTAACTCTGCTAACCAGGCTATTGAACTACTCATACAGAAGGGGGTTCCTGAATCGTATATAATATTCTTAAACCTTATATCTGCTCCTGAGGGAATTCATTGTGTTTCCAAACGATTTCCATCCTTGAAGATCGTCACTTCAGAGATTGATGTTGCCCTCAATGAAGAATTTCGTGTCATACCAGGGTTGGGTGAATTTGGAACCTCATACCTTGACACAGTCACACTTGGTTTCTGCAGTGCAGATGCTAATGTGGGTTGCATGGATATCGAGAGGAAAGCCCTTCTGAAGCTCAGAGAGGGACTCGCTGATCCTTCAGACCGGCTTTCATCTTGGGTTGGAGTAGATTGCTGCAAATGGATAGGTATAAGCTGCGACAAGACAACTGGACGCGTGGACAGCCTTAATCTTCGCAACCCGTATGTAGATGTTTTGGAGAGTGATGATGGAACACTCCATGCTTTAGGAGGTGAGATCAATCCTTCATTGCTTGTTTTGAAAGATTTGGTTTACTTGGATTTGAGCATGAATAACTTTGGAGGCCTAGAACTTCCAAGTTTCATTGGATCACTAGAAAAAATAACATATCTCAATCTATCTGGTGCATCATTTGGTGGAGTAATTCCCGCCAATCTTGGAAACCTTTCAAAATTGCTTCATCTTGATCTCAGTAATAATGCTGTTGAGAGTGATCTCAGATGGCTTTCCAGTCTTTCTTCCTTGCAGTTTCTTAACTTGGGAGGAGCAAACCTTACCAAGGCTGCACCATATTGGCTTCCCACTGTTAATATGCTCCCTTCACTTCTTGAATTGCATTTGCCTGGTTGTGGACTTTCCATCCTTCCACTTACTCTTCCTCATATCAATTTCACATCACTTTTGGTTCTTGACCTCTCTGCCAATGGTTTCAACTCCACACTTTCTCCCTGGTTGTTCAATCTGGCTGAACTAGTCAACCTTGACCTAAGTAGGAACAATCTCAATGGAGAACTTCCAGAAACACTCGGGAGTTTGACTCATCTGAAGAACCTTGATTTGTCAGAGAATTCAGACATCGGAGGTCAGTTGCCAAGAAACTTGGGAATGCTATGCGATTTGCAGTCTCTTGAACTTTCAATCAACAAAGTTACAGGTGAGATAACTGAGTTCATTGATAGATTGTCTATATGCACAAACAGCAGCTTAGAGAGGTTGGATTTAGGTTATAACAGTCTGACAGGAAATTTGCCTAATTCATTGGGACTTCTTAAGAAGTTAAGATACCTCACGTTGTGGTCCAACTCATTTCAGGGTTCTATCCCAGAATCTATTGGAAACTTGACATCTTTGGAGGAATTTTACGTTGCAAGAAATAAAATGGGTGGAGTCATCCCAGAAAGTTTTGGGCAGCTCTCATCACTCGTTGCAGTAGATCTGTCTGAAAACACATGGGAAGGTGTTGTAACAGAAGCTCATTTTCTGAAACTTCGAAGCTTAAAAGACGTGTCAATCCTGAAAGCCTCCCCAAACATTTCCCTAGTTTTCAACATTAGTTCTAATTGGATACCTCCTTTCAAATTGAGATTCTTGAACCTTAGATCATGTCAACTGGGTCCCAAATTTCCTGCATGGCTTAGAAATCAGACTGAGCTTGTCACGGTGGTCCTCAATAATGCAAAGATTGCAGATACCATACCAGATTGGTTTCGGCAGTTGAATTTGTTATTGAATGAACTAGATGTTGCTTACAATCAACTAAGCGGCAAGGTGCCGAACTCGCTAAGGTTCAGCTATCCTGCTACTGTTGATTTGAGTTCAAACCTGTTTGAGGGCCTCCTCCCACTTTGGTCAAGAAATATTACATCGCTTGACCTCAGGGATAATTTTTTCTCAGGGCCAATTCCTTCGAACATTGGTGATGTGATGCCCTCCTTGTCAGATTTAGACATCTCTAGGAATGGTTTGAGTGGAAGCATTCCCCTGTCTTTAGATACATCATACCTTTACCAGGGGAAGTTGAAGGTAGTGGCAAAAGGAAGAGTGCAAGACTTCGATCCCACTCTCTATCTTGTTAATAGCCTAGATCTCTCAAACAATAACTTATCAGGTGAGATGCCGAGGGAGCTCACAAGCCTGATAAAGTTGTGGACCTTGAATTTATCCATGAATCATCTGACAGGAGCAATGCCATCAAGGATTGGGAGCATGGAGTCGCTAGAAACTCTTGATTTGTCACTAAACCAGCTTTCAGGTTCCATTCCACAGAGTATGGTTTCATTGACATTCTTGAATCATCTAAACCTCTCATACAACAACTTGTCTGGGACAATCCCAACAGGCAACCAGTTTAACAGCCTGGTTGATCCATCAATATATGAAGGCAATGCCGCTCTTTGTGGTTATCCGTTGCCTGATTGCCAAGACAATGGCGGAACTCCTCAGGGTCCAAGTGGAGGTGGAGAAGACACTGGCTTTAAAATGTGGGGTTTCATCATCAGCATGCTGATCGGTTTCGTTATGGGGTTCTGGGGAGTTTGTGGGAGTTTGGTCATCAGCAAGTCTTGGAGGAAGACATATTTCCACTTCACTGACAAAATGATTGTTGCTTGTATACGGAAATATCAGGGGACACAGGAAATTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

1258

Amino Acids

138.93

Weight (kDa)

5.63

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRK	PF00485	61 - 247	1.3e-49	Phosphoribulokinase / Uridine kinase family
UPRTase	PF14681	310 - 453	2.4e-49	Uracil phosphoribosyltransferase
LRRNT_2	PF08263	474 - 509	9e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	777 - 925	1.6e-12	Leucine-rich repeat region
LRR_8	PF13855	801 - 858	7.9e-07	Leucine rich repeat
LRR_8	PF13855	1091 - 1149	3e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27190 AT5G40870
fragaria_vesca	FvH4_6g53220
malus_domestica	MD09G1012900.v1.1 MD17G1013500.v1.1
prunus_persica	Prupe.3G304300_v2.0.a1
pyrus_communis	pycom111g01070 pycom17g01080
rosa_chinensis	RchiOBHm_Chr2g0143031 RchiOBHm_Chr2g0143071 RchiOBHm_Chr2g0175311
rosa_laevigata	RLG00000020006 RLG00000022319
rosa_multiflora	Rmu_sc0003512.1_g000003
rosa_roxburghii	Rroxscaffold_2G00077440 Rroxscaffold_2G00102120 Rroxscaffold_2G00102150
rosa_rugosa	Rorug02G0377700 Rorug02G0582700
rosa_samantha	Rh2AG401300 Rh2AG430800 Rh2AG663000 Rh2AG663400 Rh2BG197300 Rh2BG439700 Rh2BG674200 Rh2BG674300 Rh2CG387500 Rh2CG416500 Rh2CG637300 Rh2DG450000 Rh5AG496000
rosa_wichuraiana	Rw2G035190 Rw2G035210 Rw2G054360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2355
AarI	CACCTGC	1 cut(s)	457
AasI	GACNNNNNNGTC	1 cut(s)	524
Acc36I	ACCTGC	1 cut(s)	457
AccB1I	GGYRCC	1 cut(s)	2896
AccBSI	CCGCTC	1 cut(s)	3518
AccI	GTMKAC	3 cut(s)	558, 929, 3739
AccII	CGCG	3 cut(s)	134, 261, 1542
AciI	CCGC	8 cut(s)	132, 134, 165, 399, 1776, 2889, 3516, 3558
AclWI	GGATC	5 cut(s)	915, 1454, 1723, 3176, 3485
AcsI	RAATTY	9 cut(s)	1242, 1316, 1343, 2194, 2371, 2483, 2747, 2845, 3283
AcuI	CTGAAG	4 cut(s)	1272, 1449, 1457, 2192
AcyI	GRCGYC	1 cut(s)	445
AdeI	CACNNNGTG	2 cut(s)	225, 2421
AfaI	GTAC	3 cut(s)	202, 759, 1137
AfiI	CCNNNNNNNGG	8 cut(s)	64, 725, 1337, 1906, 1976, 2956, 3136, 3581
AflII	CTTAAG	1 cut(s)	2396
AflIII	ACRYGT	2 cut(s)	1540, 2631
AhlI	ACTAGT	1 cut(s)	2098
AjiI	CACGTC	1 cut(s)	2632
AjnI	CCWGG	7 cut(s)	492, 1161, 1330, 1969, 2075, 3135, 3483
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
Alw21I	GWGCWC	1 cut(s)	3255
Alw26I	GTCTC	5 cut(s)	5, 594, 861, 1053, 2256
AlwI	GGATC	5 cut(s)	915, 1454, 1723, 3176, 3485
AlwNI	CAGNNNCTG	1 cut(s)	569
Ama87I	CYCGRG	3 cut(s)	64, 720, 2153
AoxI	GGCC	6 cut(s)	53, 67, 82, 1690, 2959, 3023
ApaI	GGGCCC	1 cut(s)	57
ApeKI	GCWGC	7 cut(s)	172, 244, 1500, 1521, 1910, 2328, 2536
ApoI	RAATTY	9 cut(s)	1242, 1316, 1343, 2194, 2371, 2483, 2747, 2845, 3283
ArsI	GACNNNNNNTTYG	2 cut(s)	2356, 2388
Asp700I	GAANNNNTTC	4 cut(s)	321, 381, 1317, 1792
AsuC2I	CCSGG	3 cut(s)	52, 721, 722
AsuHPI	GGTGA	8 cut(s)	111, 481, 995, 1352, 1631, 2294, 3056, 3248
AsuII	TTCGAA	3 cut(s)	976, 2617, 3035
AvaI	CYCGRG	3 cut(s)	64, 720, 2153
AvaII	GGWCC	5 cut(s)	2424, 2741, 2791, 3276, 3572
AxyI	CCTNAGG	4 cut(s)	306, 1236, 3002, 3567
BaeGI	GKGCMC	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	2896
BanII	GRGCYC	2 cut(s)	57, 3255
BarI	GAAGNNNNNNTAC	2 cut(s)	2393, 2425
BbsI	GAAGAC	3 cut(s)	23, 3597, 3704
Bbv12I	GWGCWC	1 cut(s)	3255
BbvI	GCAGC	7 cut(s)	184, 256, 1487, 1508, 1897, 2340, 2548
BccI	CCATC	8 cut(s)	31, 1058, 1276, 1589, 1842, 1994, 3325, 3502
BceAI	ACGGC	3 cut(s)	97, 219, 432
BcgI	CGANNNNNNTGC	6 cut(s)	548, 582, 1399, 1433, 3616, 3650
BciT130I	CCWGG	7 cut(s)	494, 1163, 1332, 1971, 2077, 3137, 3485
BciVI	GTATCC	1 cut(s)	2685
BclI	TGATCA	3 cut(s)	234, 340, 711
BcnI	CCSGG	3 cut(s)	52, 721, 722
BcoDI	GTCTC	5 cut(s)	5, 594, 861, 1053, 2256
BcuI	ACTAGT	1 cut(s)	2098
BfmI	CTRYAG	2 cut(s)	1143, 1384
BfrI	CTTAAG	1 cut(s)	2396
BfuAI	ACCTGC	1 cut(s)	457
BfuI	GTATCC	1 cut(s)	2685
BglII	AGATCT	3 cut(s)	1038, 2560, 3211
Bme18I	GGWCC	5 cut(s)	2424, 2741, 2791, 3276, 3572
BmeT110I	CYCGRG	3 cut(s)	64, 720, 2153
BmgBI	CACGTC	1 cut(s)	2632
BmiI	GGNNCC	9 cut(s)	55, 56, 1194, 1351, 2742, 2743, 2898, 3382, 3573
BmrI	ACTGGG	2 cut(s)	942, 2747
BmsI	GCATC	5 cut(s)	556, 1384, 1763, 3042, 3231
BmuI	ACTGGG	2 cut(s)	942, 2747
BpiI	GAAGAC	3 cut(s)	23, 3597, 3704
BplI	GAGNNNNNCTC	4 cut(s)	1437, 1469, 2149, 2181
BpmI	CTGGAG	2 cut(s)	216, 515
Bpu10I	CCTNAGC	1 cut(s)	2909
Bpu14I	TTCGAA	3 cut(s)	976, 2617, 3035
BpuEI	CTTGAG	1 cut(s)	659
BpuMI	CCSGG	3 cut(s)	52, 721, 722
BsaAI	YACGTR	1 cut(s)	1007
BsaBI	GATNNNNATC	1 cut(s)	1267
BsaHI	GRCGYC	1 cut(s)	445
BsaI	GGTCTC	1 cut(s)	861
BsaWI	WCCGGW	2 cut(s)	33, 209
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 2056, 2086
Bsc4I	CCNNNNNNNGG	8 cut(s)	64, 725, 1337, 1906, 1976, 2956, 3136, 3581
Bse118I	RCCGGY	1 cut(s)	1470
Bse1I	ACTGG	6 cut(s)	937, 1540, 1857, 2742, 3472, 3601
Bse21I	CCTNAGG	4 cut(s)	306, 1236, 3002, 3567
Bse3DI	GCAATG	3 cut(s)	1634, 3318, 3517
Bse8I	GATNNNNATC	1 cut(s)	1267
BseBI	CCWGG	7 cut(s)	494, 1163, 1332, 1971, 2077, 3137, 3485
BseGI	GGATG	6 cut(s)	42, 237, 343, 1268, 1986, 2517
BseJI	GATNNNNATC	1 cut(s)	1267
BseLI	CCNNNNNNNGG	8 cut(s)	64, 725, 1337, 1906, 1976, 2956, 3136, 3581
BseMI	GCAATG	3 cut(s)	1634, 3318, 3517
BseNI	ACTGG	6 cut(s)	937, 1540, 1857, 2742, 3472, 3601
BseRI	GAGGAG	5 cut(s)	23, 323, 1905, 2954, 3555
BseSI	GKGCMC	1 cut(s)	57
BseXI	GCAGC	7 cut(s)	184, 256, 1487, 1508, 1897, 2340, 2548
BsgI	GTGCAG	2 cut(s)	1410, 1896
Bsh1236I	CGCG	3 cut(s)	134, 261, 1542
BshFI	GGCC	6 cut(s)	55, 69, 84, 1692, 2961, 3025
BshNI	GGYRCC	1 cut(s)	2896
BsiHKAI	GWGCWC	1 cut(s)	3255
BsiHKCI	CYCGRG	3 cut(s)	64, 720, 2153
BsiSI	CCGG	5 cut(s)	34, 51, 210, 721, 1471
BslFI	GGGAC	6 cut(s)	635, 1464, 2403, 2727, 3466, 3769
BslI	CCNNNNNNNGG	8 cut(s)	64, 725, 1337, 1906, 1976, 2956, 3136, 3581
BsmAI	GTCTC	5 cut(s)	5, 594, 861, 1053, 2256
BsmBI	CGTCTC	2 cut(s)	5, 1053
BsmFI	GGGAC	6 cut(s)	635, 1464, 2403, 2727, 3466, 3769
BsmI	GAATGC	3 cut(s)	478, 2238, 3102
BsnI	GGCC	6 cut(s)	55, 69, 84, 1692, 2961, 3025
Bso31I	GGTCTC	1 cut(s)	861
BsoBI	CYCGRG	3 cut(s)	64, 720, 2153
Bsp119I	TTCGAA	3 cut(s)	976, 2617, 3035
Bsp120I	GGGCCC	1 cut(s)	53
Bsp1286I	GDGCHC	2 cut(s)	57, 3255
Bsp1407I	TGTACA	1 cut(s)	757
BspACI	CCGC	8 cut(s)	132, 134, 165, 399, 1776, 2889, 3516, 3558
BspANI	GGCC	6 cut(s)	55, 69, 84, 1692, 2961, 3025
BspFNI	CGCG	3 cut(s)	134, 261, 1542
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	9 cut(s)	55, 56, 1194, 1351, 2742, 2743, 2898, 3382, 3573
BspMAI	CTGCAG	1 cut(s)	1388
BspMI	ACCTGC	1 cut(s)	457
BspPI	GGATC	5 cut(s)	915, 1454, 1723, 3176, 3485
BspT104I	TTCGAA	3 cut(s)	976, 2617, 3035
BspT107I	GGYRCC	1 cut(s)	2896
BspTI	CTTAAG	1 cut(s)	2396
BspTNI	GGTCTC	1 cut(s)	861
BsrBI	CCGCTC	1 cut(s)	3518
BsrDI	GCAATG	3 cut(s)	1634, 3318, 3517
BsrFI	RCCGGY	1 cut(s)	1470
BsrGI	TGTACA	1 cut(s)	757
BsrI	ACTGG	6 cut(s)	937, 1540, 1857, 2742, 3472, 3601
BssAI	RCCGGY	1 cut(s)	1470
BssNAI	GTATAC	2 cut(s)	930, 3740
BssNI	GRCGYC	1 cut(s)	445
BssT1I	CCWWGG	2 cut(s)	1095, 1905
Bst1107I	GTATAC	2 cut(s)	930, 3740
Bst2UI	CCWGG	7 cut(s)	494, 1163, 1332, 1971, 2077, 3137, 3485
Bst6I	CTCTTC	2 cut(s)	2007, 3160
BstACI	GRCGYC	1 cut(s)	445
BstAFI	CTTAAG	1 cut(s)	2396
BstAPI	GCANNNNNTGC	2 cut(s)	1007, 2810
BstAUI	TGTACA	1 cut(s)	757
BstBAI	YACGTR	1 cut(s)	1007
BstBI	TTCGAA	3 cut(s)	976, 2617, 3035
BstC8I	GCNNGC	5 cut(s)	129, 401, 666, 851, 3629
BstDSI	CCRYGG	2 cut(s)	132, 292
BstENI	CCTNNNNNAGG	3 cut(s)	1904, 2954, 3134
BstF5I	GGATG	6 cut(s)	42, 237, 343, 1268, 1986, 2517
BstFNI	CGCG	3 cut(s)	134, 261, 1542
BstMAI	GTCTC	5 cut(s)	5, 594, 861, 1053, 2256
BstMWI	GCNNNNNNNGC	8 cut(s)	784, 1007, 1163, 1548, 2325, 2810, 2905, 3250
BstNI	CCWGG	7 cut(s)	494, 1163, 1332, 1971, 2077, 3137, 3485
BstNSI	RCATGY	3 cut(s)	853, 1014, 3631
BstSFI	CTRYAG	2 cut(s)	1143, 1384
BstSLI	GKGCMC	1 cut(s)	57
BstUI	CGCG	3 cut(s)	134, 261, 1542
BstV1I	GCAGC	7 cut(s)	184, 256, 1487, 1508, 1897, 2340, 2548
BstV2I	GAAGAC	3 cut(s)	23, 3597, 3704
BstX2I	RGATCY	3 cut(s)	1038, 2560, 3211
BstXI	CCANNNNNNTGG	1 cut(s)	3554
BstYI	RGATCY	3 cut(s)	1038, 2560, 3211
BstZ17I	GTATAC	2 cut(s)	930, 3740
Bsu36I	CCTNAGG	4 cut(s)	306, 1236, 3002, 3567
BsuI	GTATCC	1 cut(s)	2685
BsuRI	GGCC	6 cut(s)	55, 69, 84, 1692, 2961, 3025
BtgI	CCRYGG	2 cut(s)	132, 292
BtgZI	GCGATG	2 cut(s)	242, 2976
BtrI	CACGTC	1 cut(s)	2632
BtsCI	GGATG	6 cut(s)	42, 237, 343, 1268, 1986, 2517
BtsI	GCAGTG	1 cut(s)	1393
BtsIMutI	CAGTG	7 cut(s)	219, 603, 857, 1393, 1929, 3594, 3714
BveI	ACCTGC	1 cut(s)	457
Cac8I	GCNNGC	5 cut(s)	129, 401, 666, 851, 3629
CaiI	CAGNNNCTG	1 cut(s)	569
CciI	TCATGA	1 cut(s)	325
Cfr10I	RCCGGY	1 cut(s)	1470
Cfr42I	CCGCGG	1 cut(s)	135
Cfr9I	CCCGGG	1 cut(s)	720
CseI	GACGC	6 cut(s)	36, 250, 359, 453, 1100, 1548
Csp6I	GTAC	3 cut(s)	201, 758, 1136
CviQI	GTAC	3 cut(s)	201, 758, 1136
DraI	TTTAAA	1 cut(s)	3604
DraIII	CACNNNGTG	2 cut(s)	225, 2421
DrdI	GACNNNNNNGTC	1 cut(s)	524
DseDI	GACNNNNNNGTC	1 cut(s)	524
Eam1104I	CTCTTC	2 cut(s)	2007, 3160
EarI	CTCTTC	2 cut(s)	2007, 3160
EciI	GGCGGA	1 cut(s)	3573
Ecl136II	GAGCTC	1 cut(s)	3253
Eco130I	CCWWGG	2 cut(s)	1095, 1905
Eco147I	AGGCCT	1 cut(s)	1692
Eco24I	GRGCYC	2 cut(s)	57, 3255
Eco31I	GGTCTC	1 cut(s)	861
Eco32I	GATATC	1 cut(s)	1417
Eco47I	GGWCC	5 cut(s)	2424, 2741, 2791, 3276, 3572
Eco53kI	GAGCTC	1 cut(s)	3253
Eco57I	CTGAAG	4 cut(s)	1272, 1449, 1457, 2192
Eco81I	CCTNAGG	4 cut(s)	306, 1236, 3002, 3567
Eco88I	CYCGRG	3 cut(s)	64, 720, 2153
EcoICRI	GAGCTC	1 cut(s)	3253
EcoNI	CCTNNNNNAGG	3 cut(s)	1904, 2954, 3134
EcoO109I	RGGNCCY	3 cut(s)	54, 2741, 2959
EcoRI	GAATTC	2 cut(s)	1242, 2194
EcoRII	CCWGG	7 cut(s)	492, 1161, 1330, 1969, 2075, 3135, 3483
EcoRV	GATATC	1 cut(s)	1417
EcoT14I	CCWWGG	2 cut(s)	1095, 1905
EcoT22I	ATGCAT	2 cut(s)	855, 1003
EcoT38I	GRGCYC	2 cut(s)	57, 3255
ErhI	CCWWGG	2 cut(s)	1095, 1905
Esp3I	CGTCTC	2 cut(s)	5, 1053
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FaqI	GGGAC	6 cut(s)	635, 1464, 2403, 2727, 3466, 3769
FauI	CCCGC	2 cut(s)	392, 1783
FbaI	TGATCA	3 cut(s)	234, 340, 711
FblI	GTMKAC	3 cut(s)	558, 929, 3739
FokI	GGATG	6 cut(s)	49, 224, 330, 1255, 1973, 2504
FriOI	GRGCYC	2 cut(s)	57, 3255
GsuI	CTGGAG	2 cut(s)	216, 515
HaeIII	GGCC	6 cut(s)	55, 69, 84, 1692, 2961, 3025
HapII	CCGG	5 cut(s)	34, 51, 210, 721, 1471
HgaI	GACGC	6 cut(s)	36, 250, 359, 453, 1100, 1548
Hin1I	GRCGYC	1 cut(s)	445
HincII	GTYRAC	4 cut(s)	28, 559, 2104, 2735
HindII	GTYRAC	4 cut(s)	28, 559, 2104, 2735
HindIII	AAGCTT	2 cut(s)	776, 2620
HpaII	CCGG	5 cut(s)	34, 51, 210, 721, 1471
HphI	GGTGA	8 cut(s)	111, 481, 995, 1352, 1631, 2294, 3056, 3248
Hpy99I	CGWCG	3 cut(s)	83, 266, 447
HpyCH4IV	ACGT	4 cut(s)	1006, 2417, 2490, 2631
HpyF10VI	GCNNNNNNNGC	8 cut(s)	784, 1007, 1163, 1548, 2325, 2810, 2905, 3250
HpySE526I	ACGT	4 cut(s)	1006, 2417, 2490, 2631
Hsp92I	GRCGYC	1 cut(s)	445
KflI	GGGWCCC	1 cut(s)	2741
Ksp22I	TGATCA	3 cut(s)	234, 340, 711
KspI	CCGCGG	1 cut(s)	135
LmnI	GCTCC	7 cut(s)	1095, 1237, 1892, 1947, 3250, 3308, 3330
Lsp1109I	GCAGC	7 cut(s)	184, 256, 1487, 1508, 1897, 2340, 2548
LweI	GCATC	5 cut(s)	556, 1384, 1763, 3042, 3231
MaeII	ACGT	4 cut(s)	1006, 2417, 2490, 2631
MaeIII	GTNAC	7 cut(s)	1148, 1282, 1369, 2275, 2590, 2782, 3360
MbiI	CCGCTC	1 cut(s)	3518
MfeI	CAATTG	1 cut(s)	969
MflI	RGATCY	3 cut(s)	1038, 2560, 3211
MhlI	GDGCHC	2 cut(s)	57, 3255
MluI	ACGCGT	1 cut(s)	1540
MlyI	GAGTC	8 cut(s)	69, 149, 320, 623, 1446, 2158, 2523, 3347
MmeI	TCCRAC	5 cut(s)	97, 183, 1468, 2322, 2451
Mph1103I	ATGCAT	2 cut(s)	855, 1003
MroXI	GAANNNNTTC	4 cut(s)	321, 381, 1317, 1792
MslI	CAYNNNNRTG	1 cut(s)	3626
MspA1I	CMGCKG	1 cut(s)	134
MspCI	CTTAAG	1 cut(s)	2396
MspI	CCGG	5 cut(s)	34, 51, 210, 721, 1471
MunI	CAATTG	1 cut(s)	969
Mva1269I	GAATGC	3 cut(s)	478, 2238, 3102
MvaI	CCWGG	7 cut(s)	494, 1163, 1332, 1971, 2077, 3137, 3485
MvnI	CGCG	3 cut(s)	134, 261, 1542
MwoI	GCNNNNNNNGC	8 cut(s)	784, 1007, 1163, 1548, 2325, 2810, 2905, 3250
NciI	CCSGG	3 cut(s)	52, 721, 722
NlaIV	GGNNCC	9 cut(s)	55, 56, 1194, 1351, 2742, 2743, 2898, 3382, 3573
NmeAIII	GCCGAG	1 cut(s)	3270
NmuCI	GTSAC	4 cut(s)	1282, 1369, 2782, 3360
NsiI	ATGCAT	2 cut(s)	855, 1003
NspI	RCATGY	3 cut(s)	853, 1014, 3631
NspV	TTCGAA	3 cut(s)	976, 2617, 3035
PaeI	GCATGC	2 cut(s)	853, 3631
PagI	TCATGA	1 cut(s)	325
PaqCI	CACCTGC	1 cut(s)	457
PceI	AGGCCT	1 cut(s)	1692
PcsI	WCGNNNNNNNCGW	2 cut(s)	258, 916
PctI	GAATGC	3 cut(s)	478, 2238, 3102
PdmI	GAANNNNTTC	4 cut(s)	321, 381, 1317, 1792
PflFI	GACNNNGTC	1 cut(s)	1367
PfoI	TCCNGGA	1 cut(s)	492
PleI	GAGTC	8 cut(s)	69, 149, 319, 623, 1446, 2158, 2522, 3346
PpsI	GAGTC	8 cut(s)	69, 149, 319, 623, 1446, 2158, 2522, 3346
Ppu21I	YACGTR	1 cut(s)	1007
PpuMI	RGGWCCY	1 cut(s)	2741
PsiI	TTATAA	1 cut(s)	2355
Psp124BI	GAGCTC	1 cut(s)	3255
Psp5II	RGGWCCY	1 cut(s)	2741
Psp6I	CCWGG	7 cut(s)	492, 1161, 1330, 1969, 2075, 3135, 3483
PspGI	CCWGG	7 cut(s)	492, 1161, 1330, 1969, 2075, 3135, 3483
PspN4I	GGNNCC	9 cut(s)	55, 56, 1194, 1351, 2742, 2743, 2898, 3382, 3573
PspOMI	GGGCCC	1 cut(s)	53
PspPPI	RGGWCCY	1 cut(s)	2741
PsrI	GAACNNNNNNTAC	2 cut(s)	1164, 1196
PstI	CTGCAG	1 cut(s)	1388
PstNI	CAGNNNCTG	1 cut(s)	569
PsuI	RGATCY	3 cut(s)	1038, 2560, 3211
PsyI	GACNNNGTC	1 cut(s)	1367
RsaI	GTAC	3 cut(s)	202, 759, 1137
RsaNI	GTAC	3 cut(s)	201, 758, 1136
RseI	CAYNNNNRTG	1 cut(s)	3626
SacI	GAGCTC	1 cut(s)	3255
SacII	CCGCGG	1 cut(s)	135
SalI	GTCGAC	1 cut(s)	557
SchI	GAGTC	8 cut(s)	69, 149, 320, 623, 1446, 2158, 2523, 3347
SduI	GDGCHC	2 cut(s)	57, 3255
SfaNI	GCATC	5 cut(s)	556, 1384, 1763, 3042, 3231
SfcI	CTRYAG	2 cut(s)	1143, 1384
Sfr303I	CCGCGG	1 cut(s)	135
SfuI	TTCGAA	3 cut(s)	976, 2617, 3035
SgrBI	CCGCGG	1 cut(s)	135
SinI	GGWCC	5 cut(s)	2424, 2741, 2791, 3276, 3572
SmaI	CCCGGG	1 cut(s)	722
SmiMI	CAYNNNNRTG	1 cut(s)	3626
SmlI	CTYRAG	2 cut(s)	638, 2396
SmoI	CTYRAG	2 cut(s)	638, 2396
SpeI	ACTAGT	1 cut(s)	2098
SphI	GCATGC	2 cut(s)	853, 3631
SseBI	AGGCCT	1 cut(s)	1692
SsiI	CCGC	8 cut(s)	132, 134, 165, 399, 1776, 2889, 3516, 3558
SspI	AATATT	2 cut(s)	1212, 2986
SstI	GAGCTC	1 cut(s)	3255
StuI	AGGCCT	1 cut(s)	1692
StyI	CCWWGG	2 cut(s)	1095, 1905
TaiI	ACGT	4 cut(s)	1009, 2420, 2493, 2634
TaqI	TCGA	9 cut(s)	78, 442, 558, 865, 976, 1419, 2617, 3035, 3180
TaqII	GACCGA	1 cut(s)	885
TatI	WGTACW	2 cut(s)	757, 1135
TauI	GCSGC	4 cut(s)	134, 167, 2892, 3518
TscAI	CASTG	7 cut(s)	226, 610, 864, 1393, 1936, 3601, 3721
TseFI	GTSAC	4 cut(s)	1282, 1369, 2782, 3360
TseI	GCWGC	7 cut(s)	172, 244, 1500, 1521, 1910, 2328, 2536
Tsp45I	GTSAC	4 cut(s)	1282, 1369, 2782, 3360
TspGWI	ACGGA	3 cut(s)	518, 3522, 3757
TspMI	CCCGGG	1 cut(s)	720
TspRI	CASTG	7 cut(s)	226, 610, 864, 1393, 1936, 3601, 3721
Tth111I	GACNNNGTC	1 cut(s)	1367
Vha464I	CTTAAG	1 cut(s)	2396
VpaK11BI	GGWCC	5 cut(s)	2424, 2741, 2791, 3276, 3572
XagI	CCTNNNNNAGG	3 cut(s)	1904, 2954, 3134
XapI	RAATTY	9 cut(s)	1242, 1316, 1343, 2194, 2371, 2483, 2747, 2845, 3283
XbaI	TCTAGA	1 cut(s)	1126
XceI	RCATGY	3 cut(s)	853, 1014, 3631
XmaI	CCCGGG	1 cut(s)	720
XmiI	GTMKAC	3 cut(s)	558, 929, 3739
XmnI	GAANNNNTTC	4 cut(s)	321, 381, 1317, 1792
Zsp2I	ATGCAT	2 cut(s)	855, 1003

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.