Rh2BG197300

Belongs to the uridine kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003508
Physical Location & Seq
Forward (+)
18014884 .. 18034230
19347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG197300.1

Sequence Viewer

Length: 651 bp
ATGTTTGGAAGTGATGGCAGGCACTTTGTTGGGAAGGTTGGTTTACTGGGAATCGAAAACCTGGGCCAGCTTGGGAAGACTTGGAACGATGTGACTAGCTTGAACAGCTGGGTTGTTTGGGACTATTACCACTTTGTCAATTTTGTCAACTCGTTAGAGGCACAATTACAGAGGCTCACTGATGCCCAGCTTACTGCTAAAACTGTTGAGTTCCGGCGGAGATTGGGACGAGGAGAGACACTTGCAGATATTCAAGCTGAGGCTTTTGCTGTTGTTCGTGAAGCTGCAAAATGGAAGCTTGGTTTTCTTGTTTTTCCATTTGGTTTCAGGGCTCAGAGTGTCTTGATTCATTGTGAGGGAGACAATGGCAAACAGCTTATTTATGAGAAGCTCCCCAAGGACATTTCAGAGCGTCATGTCCTGCTTCTAGACCCTGTACTTGCTACAGGTAACTCTGCTAACCAGGCTATTGAACTACTCATACAGAAGGGGGTTCCTGAATCGCATATAATATTCTTAAACCTTATATCTGCTCCTGAAGGAATTCATTGTGTTTACAAACGATTTCCATCCTTGAAGATCGTCACTTCAGAGATTGATGTTGCCCTCAATGAAGAATTTGGTGATCGTTACTTCGGCACGGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004845 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006109 GO:0006139 GO:0006206 GO:0006207 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010138 GO:0010556 GO:0010675 GO:0010962 GO:0016301 GO:0016310 GO:0016740 GO:0016757 GO:0016763 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019222 GO:0019438 GO:0019637 GO:0019693 GO:0019856 GO:0031323 GO:0031326 GO:0032262 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043173 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0044206 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046112 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0050789 GO:0050794 GO:0055086 GO:0060255 GO:0065007 GO:0071704 GO:0072527 GO:0072528 GO:0080090 GO:0090407 GO:1900376 GO:1901135 GO:1901137 GO:1901141 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:2000112 GO:2000762 GO:2000904 GO:2001006
KEGG Pathways
Metabolic & Signaling
ko00030 ko00040 ko00240 ko00710 ko00983 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00240 map00710 map00983 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PRK UPRTase

Protein Analysis

216

Amino Acids

24.28

Weight (kDa)

5.7

Isoelectric Point (pI)

31.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SecA_DEAD PF07517 39 - 108 2.8e-10 SecA DEAD-like domain
UPRTase PF14681 113 - 214 1.1e-29 Uracil phosphoribosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 217
AcsI RAATTY 2 cut(s) 543, 617
AcuI CTGAAG 2 cut(s) 558, 573
AfaI GTAC 1 cut(s) 438
AgsI TTSAA 4 cut(s) 103, 254, 473, 577
AjnI CCWGG 2 cut(s) 60, 462
AluBI AGCT 9 cut(s) 70, 99, 108, 190, 257, 284, 298, 376, 391
AluI AGCT 9 cut(s) 70, 99, 108, 190, 257, 284, 298, 376, 391
Alw26I GTCTC 2 cut(s) 230, 354
AoxI GGCC 1 cut(s) 64
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 2 cut(s) 543, 617
Asp700I GAANNNNTTC 1 cut(s) 543
AspS9I GGNCC 1 cut(s) 64
AsuHPI GGTGA 1 cut(s) 635
BanII GRGCYC 1 cut(s) 334
BbsI GAAGAC 1 cut(s) 83
BbvCI CCTCAGC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 271
BccI CCATC 2 cut(s) 8, 577
BciT130I CCWGG 2 cut(s) 62, 464
BcoDI GTCTC 2 cut(s) 230, 354
BfaI CTAG 2 cut(s) 96, 428
BfmI CTRYAG 1 cut(s) 444
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
Bme1390I CCNGG 2 cut(s) 62, 464
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 495
BmrFI CCNGG 2 cut(s) 62, 464
BmrI ACTGGG 1 cut(s) 56
BmsI GCATC 1 cut(s) 172
BmuI ACTGGG 1 cut(s) 56
BpiI GAAGAC 1 cut(s) 83
Bpu10I CCTNAGC 1 cut(s) 258
BsaBI GATNNNNATC 1 cut(s) 568
BsaJI CCNNGG 2 cut(s) 61, 396
Bse1I ACTGG 1 cut(s) 51
Bse8I GATNNNNATC 1 cut(s) 568
BseBI CCWGG 2 cut(s) 62, 464
BseDI CCNNGG 2 cut(s) 61, 396
BseGI GGATG 2 cut(s) 569, 649
BseJI GATNNNNATC 1 cut(s) 568
BseMII CTCAG 2 cut(s) 249, 347
BseNI ACTGG 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 246
BseXI GCAGC 1 cut(s) 271
BseYI CCCAGC 2 cut(s) 108, 186
BshFI GGCC 1 cut(s) 66
BsiSI CCGG 1 cut(s) 214
BslFI GGGAC 2 cut(s) 134, 240
BsmAI GTCTC 2 cut(s) 230, 354
BsmFI GGGAC 2 cut(s) 134, 240
BsnI GGCC 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 334
Bsp143I GATC 2 cut(s) 579, 625
BspACI CCGC 1 cut(s) 217
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 2 cut(s) 250, 346
BspLI GGNNCC 1 cut(s) 495
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 2 cut(s) 61, 396
BssMI GATC 2 cut(s) 579, 625
BssT1I CCWWGG 1 cut(s) 396
Bst2UI CCWGG 2 cut(s) 62, 464
Bst4CI ACNGT 1 cut(s) 205
BstC8I GCNNGC 2 cut(s) 20, 68
BstDEI CTNAG 2 cut(s) 258, 333
BstF5I GGATG 2 cut(s) 569, 649
BstKTI GATC 2 cut(s) 582, 628
BstMAI GTCTC 2 cut(s) 230, 354
BstMBI GATC 2 cut(s) 579, 625
BstMWI GCNNNNNNNGC 2 cut(s) 105, 464
BstNI CCWGG 2 cut(s) 62, 464
BstSCI CCNGG 2 cut(s) 60, 462
BstSFI CTRYAG 1 cut(s) 444
BstV1I GCAGC 1 cut(s) 271
BstV2I GAAGAC 1 cut(s) 83
BsuRI GGCC 1 cut(s) 66
BtsCI GGATG 2 cut(s) 569, 649
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 2 cut(s) 20, 68
Cfr13I GGNCC 1 cut(s) 64
CseI GACGC 1 cut(s) 401
Csp6I GTAC 1 cut(s) 437
CviAII CATG 1 cut(s) 416
CviQI GTAC 1 cut(s) 437
DdeI CTNAG 2 cut(s) 258, 333
DpnI GATC 2 cut(s) 581, 627
DpnII GATC 2 cut(s) 579, 625
EciI GGCGGA 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 396
Eco24I GRGCYC 1 cut(s) 334
Eco57I CTGAAG 2 cut(s) 558, 573
EcoRI GAATTC 1 cut(s) 543
EcoRII CCWGG 2 cut(s) 60, 462
EcoT14I CCWWGG 1 cut(s) 396
EcoT38I GRGCYC 1 cut(s) 334
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 1 cut(s) 419
FaiI YATR 6 cut(s) 384, 417, 482, 507, 509, 527
FaqI GGGAC 2 cut(s) 134, 240
FatI CATG 1 cut(s) 415
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 1 cut(s) 556
FriOI GRGCYC 1 cut(s) 334
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 2 cut(s) 96, 428
GluI GCNGC 1 cut(s) 285
GsaI CCCAGC 2 cut(s) 112, 190
HaeIII GGCC 1 cut(s) 66
HapII CCGG 1 cut(s) 214
HgaI GACGC 1 cut(s) 401
Hin1II CATG 1 cut(s) 419
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 3 cut(s) 51, 346, 500
HpaII CCGG 1 cut(s) 214
HphI GGTGA 1 cut(s) 635
Hpy166II GTNNAC 3 cut(s) 44, 148, 556
Hpy188I TCNGA 3 cut(s) 336, 409, 592
Hpy188III TCNNGA 5 cut(s) 278, 343, 428, 497, 536
Hpy8I GTNNAC 3 cut(s) 44, 148, 556
HpyAV CCTTC 3 cut(s) 28, 481, 533
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4V TGCA 2 cut(s) 245, 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 464
HpyF3I CTNAG 2 cut(s) 258, 333
Hsp92II CATG 1 cut(s) 419
Kzo9I GATC 2 cut(s) 579, 625
LmnI GCTCC 2 cut(s) 396, 538
Lsp1109I GCAGC 1 cut(s) 271
LweI GCATC 1 cut(s) 172
MaeI CTAG 2 cut(s) 96, 428
MaeIII GTNAC 4 cut(s) 91, 449, 583, 629
MalI GATC 2 cut(s) 581, 627
MboI GATC 2 cut(s) 579, 625
MboII GAAGA 3 cut(s) 88, 589, 626
MhlI GDGCHC 1 cut(s) 334
MluCI AATT 4 cut(s) 139, 164, 543, 617
MnlI CCTC 6 cut(s) 151, 165, 224, 253, 349, 617
MroXI GAANNNNTTC 1 cut(s) 543
MseI TTAA 1 cut(s) 518
MspA1I CMGCKG 1 cut(s) 108
MspI CCGG 1 cut(s) 214
MspR9I CCNGG 2 cut(s) 62, 464
MvaI CCWGG 2 cut(s) 62, 464
MwoI GCNNNNNNNGC 2 cut(s) 105, 464
NdeII GATC 2 cut(s) 579, 625
NlaIII CATG 1 cut(s) 419
NlaIV GGNNCC 1 cut(s) 495
NmuCI GTSAC 2 cut(s) 91, 583
PdmI GAANNNNTTC 1 cut(s) 543
PfeI GAWTC 3 cut(s) 51, 346, 500
PkrI GCNGC 1 cut(s) 286
Psp6I CCWGG 2 cut(s) 60, 462
PspFI CCCAGC 2 cut(s) 108, 186
PspGI CCWGG 2 cut(s) 60, 462
PspN4I GGNNCC 1 cut(s) 495
PspPI GGNCC 1 cut(s) 64
PsrI GAACNNNNNNTAC 2 cut(s) 465, 497
PvuII CAGCTG 1 cut(s) 108
RsaI GTAC 1 cut(s) 438
RsaNI GTAC 1 cut(s) 437
SaqAI TTAA 1 cut(s) 518
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 2 cut(s) 579, 625
Sau96I GGNCC 1 cut(s) 64
ScrFI CCNGG 2 cut(s) 62, 464
SduI GDGCHC 1 cut(s) 334
SfaNI GCATC 1 cut(s) 172
SfcI CTRYAG 1 cut(s) 444
Sse9I AATT 4 cut(s) 139, 164, 543, 617
SsiI CCGC 1 cut(s) 217
SspI AATATT 1 cut(s) 513
SspMI CTAG 2 cut(s) 96, 428
StyD4I CCNGG 2 cut(s) 60, 462
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 1 cut(s) 205
TaqI TCGA 1 cut(s) 54
TasI AATT 4 cut(s) 139, 164, 543, 617
TatI WGTACW 1 cut(s) 436
TfiI GAWTC 3 cut(s) 51, 346, 500
Tru1I TTAA 1 cut(s) 518
Tru9I TTAA 1 cut(s) 518
TscAI CASTG 1 cut(s) 184
TseFI GTSAC 2 cut(s) 91, 583
TseI GCWGC 1 cut(s) 284
Tsp45I GTSAC 2 cut(s) 91, 583
TspDTI ATGAA 3 cut(s) 338, 536, 627
TspRI CASTG 1 cut(s) 184
XapI RAATTY 2 cut(s) 543, 617
XbaI TCTAGA 1 cut(s) 427
XmnI GAANNNNTTC 1 cut(s) 543
XspI CTAG 2 cut(s) 96, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.