Rh2AG663000

belongs to the uridine kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0003508
Physical Location & Seq
Reverse (-)
87835161 .. 87837618
2458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG663000.1

Sequence Viewer

Length: 891 bp
ATGTCTGAAATAGATGCTGATGTGAGACTTGCTCGTAGATTAAGACGAGACACTGTTGAGAGGGGCAGGGACTTAGACTCTGTTCTTGAGCAGTATGCCAAGTTTGTCAAGCCTGCTTTTGATGATTTTGTTCTCCCCTCAAAGAAGTACGCTGATGTGATCATTCCCCGGGGAGGCGATAACCATGTTGCTATTGACTTAATTGTACAACATATTCGCACGAAGCTTGGTCAGCATGACCTTTGCGAAATATATCCTAATGTGTACGTTATACAGTCCACATTTCAGATTAGAGGCATGCATACACTGATTCGAGACCGAGAAATATCAAAGCATGATTTTGTATTTTATTCAGATCGCCTAATTCGTCTGGTTGTAGAGCATGGCCTTGGTCATTTGCCATTCACAGAGAAACAAGTAATAACTCCACCAGGATCTGTGTATAATGGGGTTGATTTCTGCAAGAAATTATGTGGAGTTTCAATTGTTCGAAGTGGTGAGAGCATGGAAAATGCATTACGTGCATGTTGCAAAGGAATAAAAGTTGGGAAGATCTTGATTCATCGTGATGGAGACGATGGCAAACAGCTTATATATGAGAAGCTCCCGAAGGATATTTCAGAGCGTCATGTCCTGCTGCTAGACCCTGTACTTGCTACAGGTAATTCTGCTAACCAGGCTATTGAACTACTCATACAGAAGGGGGTTCCTGAATCGCATATAATATTCTTAAACCTTATATCTGCTCCTGAGGGAATTCATTGTGTTTACAAACGATTTCCATCCTTGAAGATCGTCACTTCAGAGATTGATGTTGCCCTCAATGAAGAATTTCGTGTCATACCAGGGTTGGGTGAATTTGGGGATCGTTACTTCGGCACAGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004845 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006109 GO:0006139 GO:0006206 GO:0006207 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010138 GO:0010556 GO:0010675 GO:0010962 GO:0016301 GO:0016310 GO:0016740 GO:0016757 GO:0016763 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019222 GO:0019438 GO:0019637 GO:0019693 GO:0019856 GO:0031323 GO:0031326 GO:0032262 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043173 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0044206 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046112 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0050789 GO:0050794 GO:0055086 GO:0060255 GO:0065007 GO:0071704 GO:0072527 GO:0072528 GO:0080090 GO:0090407 GO:1900376 GO:1901135 GO:1901137 GO:1901141 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:2000112 GO:2000762 GO:2000904 GO:2001006
KEGG Pathways
Metabolic & Signaling
ko00030 ko00040 ko00240 ko00710 ko00983 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00240 map00710 map00983 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PRK UPRTase

Protein Analysis

296

Amino Acids

33.43

Weight (kDa)

6.42

Isoelectric Point (pI)

39.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRK PF00485 4 - 63 2.3e-17 Phosphoribulokinase / Uridine kinase family
UPRTase PF14681 93 - 294 6.7e-75 Uracil phosphoribosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 442, 873
AcsI RAATTY 3 cut(s) 756, 830, 857
AcuI CTGAAG 1 cut(s) 786
AfaI GTAC 4 cut(s) 149, 207, 266, 651
AfiI CCNNNNNNNGG 2 cut(s) 173, 851
AgsI TTSAA 3 cut(s) 483, 686, 790
AjnI CCWGG 3 cut(s) 430, 675, 844
AluBI AGCT 3 cut(s) 226, 589, 604
AluI AGCT 3 cut(s) 226, 589, 604
Alw26I GTCTC 4 cut(s) 19, 42, 309, 567
AlwI GGATC 2 cut(s) 442, 873
AlwNI CAGNNNCTG 1 cut(s) 437
Ama87I CYCGRG 1 cut(s) 168
AoxI GGCC 1 cut(s) 385
ApeKI GCWGC 1 cut(s) 637
ApoI RAATTY 3 cut(s) 756, 830, 857
Asp700I GAANNNNTTC 1 cut(s) 831
AsuC2I CCSGG 2 cut(s) 169, 170
AsuHPI GGTGA 2 cut(s) 509, 866
AsuII TTCGAA 1 cut(s) 490
AvaI CYCGRG 1 cut(s) 168
AxyI CCTNAGG 1 cut(s) 750
BbvI GCAGC 1 cut(s) 624
BccI CCATC 3 cut(s) 563, 572, 790
BciT130I CCWGG 3 cut(s) 432, 677, 846
BclI TGATCA 1 cut(s) 159
BcnI CCSGG 2 cut(s) 169, 170
BcoDI GTCTC 4 cut(s) 19, 42, 309, 567
BfaI CTAG 1 cut(s) 641
BfmI CTRYAG 1 cut(s) 657
BglII AGATCT 1 cut(s) 552
BisI GCNGC 1 cut(s) 638
BlsI GCNGC 1 cut(s) 639
Bme1390I CCNGG 5 cut(s) 169, 170, 432, 677, 846
BmeT110I CYCGRG 1 cut(s) 168
BmiI GGNNCC 1 cut(s) 708
BmrFI CCNGG 5 cut(s) 169, 170, 432, 677, 846
BmsI GCATC 1 cut(s) 4
BplI GAGNNNNNCTC 2 cut(s) 16, 48
Bpu14I TTCGAA 1 cut(s) 490
BpuEI CTTGAG 1 cut(s) 107
BpuMI CCSGG 2 cut(s) 169, 170
BsaAI YACGTR 1 cut(s) 521
BsaBI GATNNNNATC 1 cut(s) 781
BsaI GGTCTC 1 cut(s) 309
BsaJI CCNNGG 5 cut(s) 167, 168, 169, 388, 845
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 851
Bse21I CCTNAGG 1 cut(s) 750
Bse8I GATNNNNATC 1 cut(s) 781
BseBI CCWGG 3 cut(s) 432, 677, 846
BseDI CCNNGG 5 cut(s) 167, 168, 169, 388, 845
BseGI GGATG 1 cut(s) 782
BseJI GATNNNNATC 1 cut(s) 781
BseLI CCNNNNNNNGG 2 cut(s) 173, 851
BseMII CTCAG 1 cut(s) 741
BseXI GCAGC 1 cut(s) 624
BshFI GGCC 1 cut(s) 387
BsiHKCI CYCGRG 1 cut(s) 168
BsiSI CCGG 1 cut(s) 169
BslFI GGGAC 1 cut(s) 83
BslI CCNNNNNNNGG 2 cut(s) 173, 851
BsmAI GTCTC 4 cut(s) 19, 42, 309, 567
BsmBI CGTCTC 1 cut(s) 567
BsmFI GGGAC 1 cut(s) 83
BsnI GGCC 1 cut(s) 387
Bso31I GGTCTC 1 cut(s) 309
BsoBI CYCGRG 1 cut(s) 168
Bsp119I TTCGAA 1 cut(s) 490
Bsp1407I TGTACA 1 cut(s) 205
Bsp143I GATC 6 cut(s) 159, 355, 434, 552, 792, 865
BspANI GGCC 1 cut(s) 387
BspCNI CTCAG 1 cut(s) 742
BspLI GGNNCC 1 cut(s) 708
BspPI GGATC 2 cut(s) 442, 873
BspT104I TTCGAA 1 cut(s) 490
BspTNI GGTCTC 1 cut(s) 309
BsrGI TGTACA 1 cut(s) 205
BssECI CCNNGG 5 cut(s) 167, 168, 169, 388, 845
BssMI GATC 6 cut(s) 159, 355, 434, 552, 792, 865
BssT1I CCWWGG 1 cut(s) 388
Bst2UI CCWGG 3 cut(s) 432, 677, 846
Bst4CI ACNGT 2 cut(s) 55, 276
BstAPI GCANNNNNTGC 1 cut(s) 521
BstAUI TGTACA 1 cut(s) 205
BstBAI YACGTR 1 cut(s) 521
BstBI TTCGAA 1 cut(s) 490
BstC8I GCNNGC 2 cut(s) 114, 299
BstDEI CTNAG 2 cut(s) 73, 750
BstF5I GGATG 1 cut(s) 782
BstKTI GATC 6 cut(s) 162, 358, 437, 555, 795, 868
BstMAI GTCTC 4 cut(s) 19, 42, 309, 567
BstMBI GATC 6 cut(s) 159, 355, 434, 552, 792, 865
BstMWI GCNNNNNNNGC 3 cut(s) 232, 521, 677
BstNI CCWGG 3 cut(s) 432, 677, 846
BstNSI RCATGY 2 cut(s) 301, 528
BstSCI CCNGG 5 cut(s) 167, 168, 430, 675, 844
BstSFI CTRYAG 1 cut(s) 657
BstV1I GCAGC 1 cut(s) 624
BstX2I RGATCY 2 cut(s) 434, 552
BstYI RGATCY 2 cut(s) 434, 552
Bsu36I CCTNAGG 1 cut(s) 750
BsuRI GGCC 1 cut(s) 387
BtsCI GGATG 1 cut(s) 782
BtsIMutI CAGTG 2 cut(s) 51, 305
Cac8I GCNNGC 2 cut(s) 114, 299
CaiI CAGNNNCTG 1 cut(s) 437
Cfr9I CCCGGG 1 cut(s) 168
CseI GACGC 1 cut(s) 614
Csp6I GTAC 4 cut(s) 148, 206, 265, 650
CviAII CATG 8 cut(s) 185, 236, 298, 335, 383, 505, 525, 629
CviJI RGCY 6 cut(s) 112, 226, 387, 589, 604, 680
CviKI_1 RGCY 6 cut(s) 112, 226, 387, 589, 604, 680
CviQI GTAC 4 cut(s) 148, 206, 265, 650
DdeI CTNAG 2 cut(s) 73, 750
DpnI GATC 6 cut(s) 161, 357, 436, 554, 794, 867
DpnII GATC 6 cut(s) 159, 355, 434, 552, 792, 865
Eco130I CCWWGG 1 cut(s) 388
Eco31I GGTCTC 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 786
Eco81I CCTNAGG 1 cut(s) 750
Eco88I CYCGRG 1 cut(s) 168
EcoRI GAATTC 1 cut(s) 756
EcoRII CCWGG 3 cut(s) 430, 675, 844
EcoT14I CCWWGG 1 cut(s) 388
EcoT22I ATGCAT 2 cut(s) 303, 517
ErhI CCWWGG 1 cut(s) 388
Esp3I CGTCTC 1 cut(s) 567
FaeI CATG 8 cut(s) 188, 239, 301, 338, 386, 508, 528, 632
FaqI GGGAC 1 cut(s) 83
FatI CATG 8 cut(s) 184, 235, 297, 334, 382, 504, 524, 628
FbaI TGATCA 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 638
FokI GGATG 1 cut(s) 769
Fsp4HI GCNGC 1 cut(s) 638
FspBI CTAG 1 cut(s) 641
GluI GCNGC 1 cut(s) 638
HaeIII GGCC 1 cut(s) 387
HapII CCGG 1 cut(s) 169
HgaI GACGC 1 cut(s) 614
Hin1II CATG 8 cut(s) 188, 239, 301, 338, 386, 508, 528, 632
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 4 cut(s) 77, 310, 559, 713
HpaII CCGG 1 cut(s) 169
HphI GGTGA 2 cut(s) 509, 866
Hpy166II GTNNAC 3 cut(s) 265, 279, 769
Hpy188I TCNGA 5 cut(s) 7, 288, 355, 622, 805
Hpy188III TCNNGA 7 cut(s) 86, 314, 556, 566, 607, 710, 749
Hpy8I GTNNAC 3 cut(s) 265, 279, 769
HpyAV CCTTC 2 cut(s) 604, 694
HpyCH4III ACNGT 2 cut(s) 55, 276
HpyCH4IV ACGT 2 cut(s) 267, 520
HpyCH4V TGCA 5 cut(s) 301, 462, 515, 524, 531
HpyF10VI GCNNNNNNNGC 3 cut(s) 232, 521, 677
HpyF3I CTNAG 2 cut(s) 73, 750
HpySE526I ACGT 2 cut(s) 267, 520
Hsp92II CATG 8 cut(s) 188, 239, 301, 338, 386, 508, 528, 632
Ksp22I TGATCA 1 cut(s) 159
Kzo9I GATC 6 cut(s) 159, 355, 434, 552, 792, 865
LmnI GCTCC 2 cut(s) 609, 751
Lsp1109I GCAGC 1 cut(s) 624
LweI GCATC 1 cut(s) 4
MaeI CTAG 1 cut(s) 641
MaeII ACGT 2 cut(s) 267, 520
MaeIII GTNAC 2 cut(s) 796, 869
MalI GATC 6 cut(s) 161, 357, 436, 554, 794, 867
MboI GATC 6 cut(s) 159, 355, 434, 552, 792, 865
MboII GAAGA 3 cut(s) 562, 802, 839
MfeI CAATTG 1 cut(s) 483
MflI RGATCY 2 cut(s) 434, 552
MluCI AATT 8 cut(s) 201, 363, 467, 483, 664, 756, 830, 857
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 6 cut(s) 54, 148, 167, 287, 745, 830
Mph1103I ATGCAT 2 cut(s) 303, 517
MroXI GAANNNNTTC 1 cut(s) 831
MseI TTAA 3 cut(s) 41, 200, 731
MslI CAYNNNNRTG 1 cut(s) 567
MspI CCGG 1 cut(s) 169
MspR9I CCNGG 5 cut(s) 169, 170, 432, 677, 846
MunI CAATTG 1 cut(s) 483
MvaI CCWGG 3 cut(s) 432, 677, 846
MwoI GCNNNNNNNGC 3 cut(s) 232, 521, 677
NciI CCSGG 2 cut(s) 169, 170
NdeII GATC 6 cut(s) 159, 355, 434, 552, 792, 865
NlaIII CATG 8 cut(s) 188, 239, 301, 338, 386, 508, 528, 632
NlaIV GGNNCC 1 cut(s) 708
NmuCI GTSAC 1 cut(s) 796
NsiI ATGCAT 2 cut(s) 303, 517
NspI RCATGY 2 cut(s) 301, 528
NspV TTCGAA 1 cut(s) 490
PaeI GCATGC 1 cut(s) 301
PcsI WCGNNNNNNNCGW 1 cut(s) 364
PdmI GAANNNNTTC 1 cut(s) 831
PfeI GAWTC 3 cut(s) 310, 559, 713
PkrI GCNGC 1 cut(s) 639
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
Ppu21I YACGTR 1 cut(s) 521
Psp6I CCWGG 3 cut(s) 430, 675, 844
PspGI CCWGG 3 cut(s) 430, 675, 844
PspN4I GGNNCC 1 cut(s) 708
PsrI GAACNNNNNNTAC 2 cut(s) 678, 710
PstNI CAGNNNCTG 1 cut(s) 437
PsuI RGATCY 2 cut(s) 434, 552
RsaI GTAC 4 cut(s) 149, 207, 266, 651
RsaNI GTAC 4 cut(s) 148, 206, 265, 650
RseI CAYNNNNRTG 1 cut(s) 567
SaqAI TTAA 3 cut(s) 41, 200, 731
SatI GCNGC 1 cut(s) 638
Sau3AI GATC 6 cut(s) 159, 355, 434, 552, 792, 865
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 5 cut(s) 169, 170, 432, 677, 846
SetI ASST 8 cut(s) 228, 243, 270, 523, 591, 606, 664, 738
SfaNI GCATC 1 cut(s) 4
SfcI CTRYAG 1 cut(s) 657
SfuI TTCGAA 1 cut(s) 490
SmaI CCCGGG 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 567
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
SphI GCATGC 1 cut(s) 301
Sse9I AATT 8 cut(s) 201, 363, 467, 483, 664, 756, 830, 857
SspI AATATT 1 cut(s) 726
SspMI CTAG 1 cut(s) 641
StyD4I CCNGG 5 cut(s) 167, 168, 430, 675, 844
StyI CCWWGG 1 cut(s) 388
TaaI ACNGT 2 cut(s) 55, 276
TaiI ACGT 2 cut(s) 270, 523
TaqI TCGA 2 cut(s) 313, 490
TaqII GACCGA 1 cut(s) 333
TasI AATT 8 cut(s) 201, 363, 467, 483, 664, 756, 830, 857
TatI WGTACW 2 cut(s) 205, 649
TfiI GAWTC 3 cut(s) 310, 559, 713
Tru1I TTAA 3 cut(s) 41, 200, 731
Tru9I TTAA 3 cut(s) 41, 200, 731
TscAI CASTG 2 cut(s) 58, 312
TseFI GTSAC 1 cut(s) 796
TseI GCWGC 1 cut(s) 637
Tsp45I GTSAC 1 cut(s) 796
TspDTI ATGAA 3 cut(s) 551, 749, 840
TspMI CCCGGG 1 cut(s) 168
TspRI CASTG 2 cut(s) 58, 312
XapI RAATTY 3 cut(s) 756, 830, 857
XceI RCATGY 2 cut(s) 301, 528
XmaI CCCGGG 1 cut(s) 168
XmnI GAANNNNTTC 1 cut(s) 831
XspI CTAG 1 cut(s) 641
Zsp2I ATGCAT 2 cut(s) 303, 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.