Rw2G035190

belongs to the uridine kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0003508
Physical Location & Seq
Reverse (-)
58006959 .. 58011224
4266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G035190.1

Sequence Viewer

Length: 1047 bp
ATGTTAGAATGTGTTCAAAAGTTAAAGTGCGGGCAGTCTGTCCAAGTTCCAATTTATGATTTTAAGATACATCGACGCTGTTCTGATACTTTTCGCCAGGTGAATGCTTCCGATGTCATCATCTTGGAGGGAATTCTGGTTTTCCATGACCAGCGCGTACGTAATTTGATGAACATGAAGATCTTTGTCGACACAGATGCTGATGTCAGACTTGCTCGTAGAATAAGACGAGACACTGTTGAGAGGGGCAGGGACATTGACTCTGTTCTTGAGCAGTATGCCAAGTTTGTCAAGCCTGCTTTTGATGATTTTGTTCTCCCCTCAAAGAAGTACGCTGATGTGATTATTCCCCGGGGAGGCGATAACCATGTTGCTATTGATTTAATTGTACAACATATTCGGACAAAGCTTGGTCAGCATGATCTTTGCAAAATATATCCTAATGTGTACGTTATACAGTCCACATTTCAGATTAGAGGCATGCATACACTGATTCGAGACCGAGAAATATCAAAGCATGATTTTGTATATCGCCTAATTCGTCTGGTTGTGGAGCATGGCCTTGGTCATTTGCCATTCATAGAGAAACAAGTAATAACTCCACCAGGATCTGTTTATACTGGGGTTGATTTCTGCAAGAAATTATGTGGAGTTTCAATTGTTCGAAGTGGTGAGAGCATGGAAAATGCATTGCGTGCATTTTGCAAAGGTATAAAAATTGGGAAGATCTTGATTCATCGTGATGCAGACGATGGCAAACAGAAGCTCCCCAAGGATATTTCAGAGCGTCATGTCCTGCTTTTAGACCCTGTACTTGCTACAGGTAACTCTGCTAACCAGGCTATTGAACTACTCATACAGAAGGGGGTTCCTGAATCGCATATAATATTCTTAAACCTTATAGCTGTGAGGAATTCATTGTGTTTACCACTATTTCCATCCTTGAAGATCGTCACTTCAGAGATTGATATTGCCCTCAATGAACAATTTCGTGTCATACCAGGGTTGGGTGAATTTGGTGATCGTTACTTTGGCACGGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004845 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006109 GO:0006139 GO:0006206 GO:0006207 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010138 GO:0010556 GO:0010675 GO:0010962 GO:0016301 GO:0016310 GO:0016740 GO:0016757 GO:0016763 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019222 GO:0019438 GO:0019637 GO:0019693 GO:0019856 GO:0031323 GO:0031326 GO:0032262 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043173 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0044206 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046112 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0050789 GO:0050794 GO:0055086 GO:0060255 GO:0065007 GO:0071704 GO:0072527 GO:0072528 GO:0080090 GO:0090407 GO:1900376 GO:1901135 GO:1901137 GO:1901141 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:2000112 GO:2000762 GO:2000904 GO:2001006
KEGG Pathways
Metabolic & Signaling
ko00030 ko00040 ko00240 ko00710 ko00983 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00240 map00710 map00983 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PRK UPRTase

Protein Analysis

348

Amino Acids

39.54

Weight (kDa)

8.69

Isoelectric Point (pI)

32.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRK PF00485 1 - 124 3.6e-38 Phosphoribulokinase / Uridine kinase family
UPRTase PF14681 154 - 346 6.8e-60 Uracil phosphoribosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 189
AccII CGCG 1 cut(s) 156
AciI CCGC 1 cut(s) 30
AclWI GGATC 1 cut(s) 616
AcsI RAATTY 3 cut(s) 132, 913, 1013
AcuI CTGAAG 1 cut(s) 942
AfaI GTAC 5 cut(s) 159, 332, 390, 449, 813
AfiI CCNNNNNNNGG 2 cut(s) 356, 1007
AgsI TTSAA 4 cut(s) 17, 657, 848, 946
AjnI CCWGG 4 cut(s) 96, 604, 837, 1000
AluBI AGCT 3 cut(s) 409, 766, 905
AluI AGCT 3 cut(s) 409, 766, 905
Alw26I GTCTC 2 cut(s) 225, 492
AlwI GGATC 1 cut(s) 616
AlwNI CAGNNNCTG 2 cut(s) 200, 611
Ama87I CYCGRG 1 cut(s) 351
AoxI GGCC 1 cut(s) 559
ApoI RAATTY 3 cut(s) 132, 913, 1013
Asp700I GAANNNNTTC 2 cut(s) 12, 987
AspLEI GCGC 1 cut(s) 156
AsuC2I CCSGG 2 cut(s) 352, 353
AsuHPI GGTGA 4 cut(s) 112, 683, 1022, 1031
AsuII TTCGAA 1 cut(s) 664
AvaI CYCGRG 1 cut(s) 351
BccI CCATC 2 cut(s) 746, 946
BcgI CGANNNNNNTGC 2 cut(s) 179, 213
BciT130I CCWGG 4 cut(s) 98, 606, 839, 1002
BcnI CCSGG 2 cut(s) 352, 353
BcoDI GTCTC 2 cut(s) 225, 492
BfmI CTRYAG 1 cut(s) 819
BglII AGATCT 2 cut(s) 180, 726
Bme1390I CCNGG 6 cut(s) 98, 352, 353, 606, 839, 1002
BmeT110I CYCGRG 1 cut(s) 351
BmiI GGNNCC 1 cut(s) 870
BmrFI CCNGG 6 cut(s) 98, 352, 353, 606, 839, 1002
BmrI ACTGGG 1 cut(s) 630
BmsI GCATC 2 cut(s) 187, 733
BmuI ACTGGG 1 cut(s) 630
Bpu14I TTCGAA 1 cut(s) 664
BpuEI CTTGAG 1 cut(s) 290
BpuMI CCSGG 2 cut(s) 352, 353
BsaAI YACGTR 1 cut(s) 161
BsaI GGTCTC 1 cut(s) 492
BsaJI CCNNGG 6 cut(s) 350, 351, 352, 562, 771, 1001
BsaXI ACNNNNNCTCC 2 cut(s) 750, 780
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 1007
Bse1I ACTGG 1 cut(s) 625
Bse3DI GCAATG 1 cut(s) 689
BseBI CCWGG 4 cut(s) 98, 606, 839, 1002
BseDI CCNNGG 6 cut(s) 350, 351, 352, 562, 771, 1001
BseGI GGATG 2 cut(s) 938, 1045
BseLI CCNNNNNNNGG 2 cut(s) 356, 1007
BseMI GCAATG 1 cut(s) 689
BseNI ACTGG 1 cut(s) 625
Bsh1236I CGCG 1 cut(s) 156
BshFI GGCC 1 cut(s) 561
BsiHKCI CYCGRG 1 cut(s) 351
BsiSI CCGG 1 cut(s) 352
BsiWI CGTACG 1 cut(s) 157
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 2 cut(s) 356, 1007
BsmAI GTCTC 2 cut(s) 225, 492
BsmFI GGGAC 1 cut(s) 266
BsmI GAATGC 1 cut(s) 109
BsnI GGCC 1 cut(s) 561
Bso31I GGTCTC 1 cut(s) 492
BsoBI CYCGRG 1 cut(s) 351
Bsp119I TTCGAA 1 cut(s) 664
Bsp1407I TGTACA 1 cut(s) 388
Bsp143I GATC 6 cut(s) 180, 421, 608, 726, 948, 1021
BspACI CCGC 1 cut(s) 30
BspANI GGCC 1 cut(s) 561
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 870
BspPI GGATC 1 cut(s) 616
BspT104I TTCGAA 1 cut(s) 664
BspTNI GGTCTC 1 cut(s) 492
BsrDI GCAATG 1 cut(s) 689
BsrGI TGTACA 1 cut(s) 388
BsrI ACTGG 1 cut(s) 625
BssECI CCNNGG 6 cut(s) 350, 351, 352, 562, 771, 1001
BssMI GATC 6 cut(s) 180, 421, 608, 726, 948, 1021
BssT1I CCWWGG 2 cut(s) 562, 771
Bst2UI CCWGG 4 cut(s) 98, 606, 839, 1002
Bst4CI ACNGT 2 cut(s) 238, 459
BstAPI GCANNNNNTGC 1 cut(s) 695
BstAUI TGTACA 1 cut(s) 388
BstBAI YACGTR 1 cut(s) 161
BstBI TTCGAA 1 cut(s) 664
BstC8I GCNNGC 4 cut(s) 32, 297, 482, 696
BstF5I GGATG 2 cut(s) 938, 1045
BstFNI CGCG 1 cut(s) 156
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 6 cut(s) 183, 424, 611, 729, 951, 1024
BstMAI GTCTC 2 cut(s) 225, 492
BstMBI GATC 6 cut(s) 180, 421, 608, 726, 948, 1021
BstMWI GCNNNNNNNGC 3 cut(s) 415, 695, 839
BstNI CCWGG 4 cut(s) 98, 606, 839, 1002
BstNSI RCATGY 1 cut(s) 484
BstSCI CCNGG 6 cut(s) 96, 350, 351, 604, 837, 1000
BstSFI CTRYAG 1 cut(s) 819
BstSNI TACGTA 1 cut(s) 161
BstUI CGCG 1 cut(s) 156
BstX2I RGATCY 3 cut(s) 180, 608, 726
BstYI RGATCY 3 cut(s) 180, 608, 726
BsuRI GGCC 1 cut(s) 561
BtsCI GGATG 2 cut(s) 938, 1045
BtsIMutI CAGTG 2 cut(s) 234, 488
Cac8I GCNNGC 4 cut(s) 32, 297, 482, 696
CaiI CAGNNNCTG 2 cut(s) 200, 611
CfoI GCGC 1 cut(s) 156
Cfr9I CCCGGG 1 cut(s) 351
CseI GACGC 2 cut(s) 84, 776
Csp6I GTAC 5 cut(s) 158, 331, 389, 448, 812
CviAII CATG 9 cut(s) 146, 175, 368, 419, 481, 518, 557, 679, 791
CviJI RGCY 6 cut(s) 295, 409, 561, 766, 842, 905
CviKI_1 RGCY 6 cut(s) 295, 409, 561, 766, 842, 905
CviQI GTAC 5 cut(s) 158, 331, 389, 448, 812
DpnI GATC 6 cut(s) 182, 423, 610, 728, 950, 1023
DpnII GATC 6 cut(s) 180, 421, 608, 726, 948, 1021
Eco105I TACGTA 1 cut(s) 161
Eco130I CCWWGG 2 cut(s) 562, 771
Eco31I GGTCTC 1 cut(s) 492
Eco57I CTGAAG 1 cut(s) 942
Eco88I CYCGRG 1 cut(s) 351
EcoRI GAATTC 2 cut(s) 132, 913
EcoRII CCWGG 4 cut(s) 96, 604, 837, 1000
EcoT14I CCWWGG 2 cut(s) 562, 771
EcoT22I ATGCAT 2 cut(s) 486, 691
ErhI CCWWGG 2 cut(s) 562, 771
FaeI CATG 9 cut(s) 149, 178, 371, 422, 484, 521, 560, 682, 794
FaqI GGGAC 1 cut(s) 266
FatI CATG 9 cut(s) 145, 174, 367, 418, 480, 517, 556, 678, 790
FauI CCCGC 1 cut(s) 23
FblI GTMKAC 1 cut(s) 189
FokI GGATG 1 cut(s) 925
GlaI GCGC 1 cut(s) 155
HaeIII GGCC 1 cut(s) 561
HapII CCGG 1 cut(s) 352
HgaI GACGC 2 cut(s) 84, 776
HhaI GCGC 1 cut(s) 156
Hin1II CATG 9 cut(s) 149, 178, 371, 422, 484, 521, 560, 682, 794
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HindIII AAGCTT 1 cut(s) 407
HinfI GANTC 4 cut(s) 260, 493, 733, 875
HpaII CCGG 1 cut(s) 352
HphI GGTGA 4 cut(s) 112, 683, 1022, 1031
Hpy166II GTNNAC 4 cut(s) 190, 448, 462, 926
Hpy188I TCNGA 7 cut(s) 85, 112, 209, 402, 471, 784, 961
Hpy188III TCNNGA 5 cut(s) 269, 497, 730, 740, 872
Hpy8I GTNNAC 4 cut(s) 190, 448, 462, 926
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 1 cut(s) 856
HpyCH4III ACNGT 2 cut(s) 238, 459
HpyCH4IV ACGT 2 cut(s) 160, 450
HpyCH4V TGCA 7 cut(s) 429, 484, 636, 689, 698, 705, 746
HpyF10VI GCNNNNNNNGC 3 cut(s) 415, 695, 839
HpySE526I ACGT 2 cut(s) 160, 450
Hsp92II CATG 9 cut(s) 149, 178, 371, 422, 484, 521, 560, 682, 794
HspAI GCGC 1 cut(s) 154
Kzo9I GATC 6 cut(s) 180, 421, 608, 726, 948, 1021
LmnI GCTCC 2 cut(s) 553, 771
LweI GCATC 2 cut(s) 187, 733
MaeII ACGT 2 cut(s) 160, 450
MaeIII GTNAC 3 cut(s) 824, 952, 1025
MalI GATC 6 cut(s) 182, 423, 610, 728, 950, 1023
MboI GATC 6 cut(s) 180, 421, 608, 726, 948, 1021
MboII GAAGA 3 cut(s) 190, 736, 958
MfeI CAATTG 1 cut(s) 657
MflI RGATCY 3 cut(s) 180, 608, 726
MlyI GAGTC 1 cut(s) 254
MnlI CCTC 7 cut(s) 121, 237, 331, 350, 470, 903, 986
Mph1103I ATGCAT 2 cut(s) 486, 691
MroXI GAANNNNTTC 2 cut(s) 12, 987
MseI TTAA 4 cut(s) 23, 63, 383, 893
MslI CAYNNNNRTG 1 cut(s) 741
MspI CCGG 1 cut(s) 352
MspR9I CCNGG 6 cut(s) 98, 352, 353, 606, 839, 1002
MunI CAATTG 1 cut(s) 657
Mva1269I GAATGC 1 cut(s) 109
MvaI CCWGG 4 cut(s) 98, 606, 839, 1002
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 3 cut(s) 415, 695, 839
NciI CCSGG 2 cut(s) 352, 353
NdeII GATC 6 cut(s) 180, 421, 608, 726, 948, 1021
NlaIII CATG 9 cut(s) 149, 178, 371, 422, 484, 521, 560, 682, 794
NlaIV GGNNCC 1 cut(s) 870
NmuCI GTSAC 1 cut(s) 952
NsiI ATGCAT 2 cut(s) 486, 691
NspI RCATGY 1 cut(s) 484
NspV TTCGAA 1 cut(s) 664
PaeI GCATGC 1 cut(s) 484
PcsI WCGNNNNNNNCGW 1 cut(s) 538
PctI GAATGC 1 cut(s) 109
PdmI GAANNNNTTC 2 cut(s) 12, 987
PfeI GAWTC 3 cut(s) 493, 733, 875
Pfl23II CGTACG 1 cut(s) 157
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
Ppu21I YACGTR 1 cut(s) 161
Psp6I CCWGG 4 cut(s) 96, 604, 837, 1000
PspGI CCWGG 4 cut(s) 96, 604, 837, 1000
PspLI CGTACG 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 870
PsrI GAACNNNNNNTAC 2 cut(s) 840, 872
PstNI CAGNNNCTG 2 cut(s) 200, 611
PsuI RGATCY 3 cut(s) 180, 608, 726
RsaI GTAC 5 cut(s) 159, 332, 390, 449, 813
RsaNI GTAC 5 cut(s) 158, 331, 389, 448, 812
RseI CAYNNNNRTG 1 cut(s) 741
SalI GTCGAC 1 cut(s) 188
SaqAI TTAA 4 cut(s) 23, 63, 383, 893
Sau3AI GATC 6 cut(s) 180, 421, 608, 726, 948, 1021
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 6 cut(s) 98, 352, 353, 606, 839, 1002
SetI ASST 9 cut(s) 102, 163, 411, 453, 712, 768, 826, 900, 907
SfaNI GCATC 2 cut(s) 187, 733
SfcI CTRYAG 1 cut(s) 819
SfuI TTCGAA 1 cut(s) 664
SmaI CCCGGG 1 cut(s) 353
SmiMI CAYNNNNRTG 1 cut(s) 741
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
SnaBI TACGTA 1 cut(s) 161
SphI GCATGC 1 cut(s) 484
SsiI CCGC 1 cut(s) 30
SspI AATATT 1 cut(s) 888
StyD4I CCNGG 6 cut(s) 96, 350, 351, 604, 837, 1000
StyI CCWWGG 2 cut(s) 562, 771
TaaI ACNGT 2 cut(s) 238, 459
TaiI ACGT 2 cut(s) 163, 453
TaqI TCGA 4 cut(s) 73, 189, 496, 664
TaqII GACCGA 1 cut(s) 516
TatI WGTACW 2 cut(s) 388, 811
TfiI GAWTC 3 cut(s) 493, 733, 875
Tru1I TTAA 4 cut(s) 23, 63, 383, 893
Tru9I TTAA 4 cut(s) 23, 63, 383, 893
TscAI CASTG 2 cut(s) 241, 495
TseFI GTSAC 1 cut(s) 952
Tsp45I GTSAC 1 cut(s) 952
TspDTI ATGAA 6 cut(s) 185, 191, 568, 725, 906, 996
TspMI CCCGGG 1 cut(s) 351
TspRI CASTG 2 cut(s) 241, 495
XapI RAATTY 3 cut(s) 132, 913, 1013
XceI RCATGY 1 cut(s) 484
XmaI CCCGGG 1 cut(s) 351
XmiI GTMKAC 1 cut(s) 189
XmnI GAANNNNTTC 2 cut(s) 12, 987
Zsp2I ATGCAT 2 cut(s) 486, 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.