Prupe.3G304300_v2.0.a1

Belongs to the uridine kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0003508
Physical Location & Seq
Forward (+)
26716658 .. 26722933
6276 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G304300.1

Sequence Viewer

Length: 1434 bp
ATGCCGGAGGAGACGACCACCATAGACTACGTGATGGAGGCAGCGTCCGGGCCCCACTTCTCGGGGCTCAGACTTGACGGCCTCCTCTCATCTCCACGTTCTGCATCGTCTTCCTCTCCTGCTTCCGCTGCTTCAAACCCAGCCGACCCCAACGCCACCAAGCAGCCCTTCGTCATTGGTGTTTCGGGAGGTACGGCTTCTGGTAAGACCACGGTTTGCGACATGATCATCCAACAGCTTCACGATCATCGGGTCGTCCTTGTCAATCAGGATTCATTTTACCGTGGTTTGACACCTGAGGAATCTGAACGGGTGCATGAGTATAATTTTGATCATCCTGATGCTTTTGACACTGAGCAACTTTTAGAGTGCGTTCAAAAGCTAAAATGTGGCCAATCTGTCCAAGTTCCGATTTATGATTTTAAGATCCATCGACGAAGTTCTGATACTTTCCGGCAGGTGAATGCTTCCGATGTAATAATTTTGGAGGGAATTCTGGTATTCCACGATCAACGTGTCCGAAATCTGATGAACATGAAGATTTTTGTCGATACAGATGCTGATGTAAGGCTTGCTCGTAGAATAAGACGAGACACAGTTGAGAGGGGGAGGGACATAAACTCTGTTCTTGAAATGTATGCCAAGTTTGTCAAGCCTGCTTTTGATGATTTTGTTCACCCATCAAAGAAGTATGCTGATGTGATCATTCCCCGTGGTGGTGATAATCATGTAGCCATTGATTTGATTGTGCAACATATTCAAACAAAGCTTGGTCAGCATGACCTCTGCAAAATTTATCCCAATATGTATGTTATTCAGTCAACATTTCAGATTAGAGGTATGCATACACTGATTCGAGACCGAGAAATATCAAAGCATGACTTTGTATTTTATTCAGATCGGCTAATTCGTCTGGTTGTGGAGCATGGCCTTGGCCATTTGCCATTCACAGAGAAGCAAGTAGTAACTCCAACAGCATCAGTATATACTGGGGTTGATTTCTGCAAGAAATTGTGTGGGGTTTCAATTGTTCGAAGTGGTGAGAGCATGGAAAATGCATTACGTGCATGCTGCAAAGGAATAAAAATTGGAAAGATTCTGATTCACCGTGATGGAGACAATGGGAAACAGCTTATATACGAGAAGCTTCCCAAGGATATTTCAGAACGACATGTCCTGCTTCTAGACCCCGTCCTTGCTACAGGTAACTCAGCTAACCAGGCTATTGAACTACTCATACAGAAAGGAGTTCCTGAAGCACATATAATATTCTTAAACCTTATCTCTGCCCCTGAAGGAATCCATTGTGTTTCCAAACGGTTTCCATCGTTGAAGATTGTCACTTCAGAGATTGATGTTGCACTGAATGAAGAATTCCGTGTGATACCAGGAATGGGTGAATTTGGTGATCGGTACTTTGGCACTGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004845 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006109 GO:0006139 GO:0006206 GO:0006207 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010138 GO:0010556 GO:0010675 GO:0010962 GO:0016301 GO:0016310 GO:0016740 GO:0016757 GO:0016763 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019222 GO:0019438 GO:0019637 GO:0019693 GO:0019856 GO:0031323 GO:0031326 GO:0032262 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043173 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0044206 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046112 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0050789 GO:0050794 GO:0055086 GO:0060255 GO:0065007 GO:0071704 GO:0072527 GO:0072528 GO:0080090 GO:0090407 GO:1900376 GO:1901135 GO:1901137 GO:1901141 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:2000112 GO:2000762 GO:2000904 GO:2001006
KEGG Pathways
Metabolic & Signaling
ko00030 ko00040 ko00240 ko00710 ko00983 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00240 map00710 map00983 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PRK UPRTase

Protein Analysis

478

Amino Acids

53.43

Weight (kDa)

6.26

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 448
Acc36I ACCTGC 1 cut(s) 448
AciI CCGC 1 cut(s) 126
AclWI GGATC 1 cut(s) 421
AcoI YGGCCR 2 cut(s) 391, 934
AcsI RAATTY 4 cut(s) 492, 792, 1373, 1400
AcuI CTGAAG 3 cut(s) 1275, 1314, 1329
AfaI GTAC 2 cut(s) 193, 1415
AfiI CCNNNNNNNGG 3 cut(s) 61, 716, 1394
AflIII ACRYGT 2 cut(s) 514, 1171
AgsI TTSAA 7 cut(s) 135, 377, 632, 761, 1026, 1229, 1333
AjnI CCWGG 2 cut(s) 1218, 1387
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AloI GAACNNNNNNTCC 2 cut(s) 1158, 1190
AluBI AGCT 6 cut(s) 238, 382, 769, 1132, 1147, 1214
AluI AGCT 6 cut(s) 238, 382, 769, 1132, 1147, 1214
Alw26I GTCTC 4 cut(s) 5, 585, 852, 1110
AlwI GGATC 1 cut(s) 421
AlwNI CAGNNNCTG 1 cut(s) 560
Ama87I CYCGRG 1 cut(s) 61
AoxI GGCC 5 cut(s) 50, 79, 391, 928, 934
ApaI GGGCCC 1 cut(s) 54
ApeKI GCWGC 4 cut(s) 41, 128, 163, 1071
ApoI RAATTY 4 cut(s) 492, 792, 1373, 1400
AspS9I GGNCC 2 cut(s) 50, 51
AsuC2I CCSGG 1 cut(s) 49
AsuHPI GGTGA 7 cut(s) 472, 668, 731, 1052, 1097, 1409, 1418
AsuII TTCGAA 1 cut(s) 1033
AvaI CYCGRG 1 cut(s) 61
AxyI CCTNAGG 1 cut(s) 297
BaeGI GKGCMC 1 cut(s) 54
BalI TGGCCA 2 cut(s) 393, 936
BanII GRGCYC 2 cut(s) 54, 69
BarI GAAGNNNNNNTAC 2 cut(s) 430, 462
BbsI GAAGAC 1 cut(s) 102
BbvI GCAGC 4 cut(s) 53, 115, 175, 1058
BccI CCATC 5 cut(s) 28, 438, 688, 1106, 1333
BceAI ACGGC 2 cut(s) 94, 210
BcgI CGANNNNNNTGC 2 cut(s) 539, 573
BciT130I CCWGG 2 cut(s) 1220, 1389
BclI TGATCA 3 cut(s) 225, 331, 702
BcnI CCSGG 1 cut(s) 49
BcoDI GTCTC 4 cut(s) 5, 585, 852, 1110
BfaI CTAG 1 cut(s) 1184
BfmI CTRYAG 1 cut(s) 1200
BfuAI ACCTGC 1 cut(s) 448
BisI GCNGC 4 cut(s) 42, 129, 164, 1072
BlsI GCNGC 4 cut(s) 43, 130, 165, 1073
Bme1390I CCNGG 3 cut(s) 49, 1220, 1389
BmeT110I CYCGRG 1 cut(s) 61
BmgT120I GGNCC 2 cut(s) 50, 51
BmiI GGNNCC 2 cut(s) 52, 53
BmrFI CCNGG 3 cut(s) 49, 1220, 1389
BmrI ACTGGG 1 cut(s) 999
BmsI GCATC 4 cut(s) 113, 331, 547, 986
BmuI ACTGGG 1 cut(s) 999
BpiI GAAGAC 1 cut(s) 102
Bpu14I TTCGAA 1 cut(s) 1033
BpuMI CCSGG 1 cut(s) 49
BsaAI YACGTR 2 cut(s) 31, 1064
BsaI GGTCTC 1 cut(s) 852
BsaJI CCNNGG 5 cut(s) 210, 283, 712, 931, 1152
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 716, 1394
Bse1I ACTGG 1 cut(s) 994
Bse21I CCTNAGG 1 cut(s) 297
BseBI CCWGG 2 cut(s) 1220, 1389
BseDI CCNNGG 5 cut(s) 210, 283, 712, 931, 1152
BseGI GGATG 2 cut(s) 228, 334
BseLI CCNNNNNNNGG 3 cut(s) 61, 716, 1394
BseMII CTCAG 4 cut(s) 82, 288, 345, 1224
BseNI ACTGG 1 cut(s) 994
BseRI GAGGAG 2 cut(s) 23, 74
BseSI GKGCMC 1 cut(s) 54
BseXI GCAGC 4 cut(s) 53, 115, 175, 1058
BseYI CCCAGC 1 cut(s) 139
BshFI GGCC 5 cut(s) 52, 81, 393, 930, 936
BsiHKCI CYCGRG 1 cut(s) 61
BsiSI CCGG 3 cut(s) 5, 48, 454
BslFI GGGAC 1 cut(s) 626
BslI CCNNNNNNNGG 3 cut(s) 61, 716, 1394
BsmAI GTCTC 4 cut(s) 5, 585, 852, 1110
BsmBI CGTCTC 1 cut(s) 5
BsmFI GGGAC 1 cut(s) 626
BsmI GAATGC 1 cut(s) 469
BsnI GGCC 5 cut(s) 52, 81, 393, 930, 936
Bso31I GGTCTC 1 cut(s) 852
BsoBI CYCGRG 1 cut(s) 61
Bsp119I TTCGAA 1 cut(s) 1033
Bsp120I GGGCCC 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 54, 69
Bsp143I GATC 8 cut(s) 225, 244, 331, 426, 508, 702, 898, 1408
BspACI CCGC 1 cut(s) 126
BspANI GGCC 5 cut(s) 52, 81, 393, 930, 936
BspCNI CTCAG 4 cut(s) 81, 289, 346, 1223
BspLI GGNNCC 2 cut(s) 52, 53
BspMI ACCTGC 1 cut(s) 448
BspPI GGATC 1 cut(s) 421
BspT104I TTCGAA 1 cut(s) 1033
BspTNI GGTCTC 1 cut(s) 852
BsrI ACTGG 1 cut(s) 994
BssECI CCNNGG 5 cut(s) 210, 283, 712, 931, 1152
BssMI GATC 8 cut(s) 225, 244, 331, 426, 508, 702, 898, 1408
BssT1I CCWWGG 2 cut(s) 931, 1152
Bst2UI CCWGG 2 cut(s) 1220, 1389
Bst4CI ACNGT 5 cut(s) 214, 284, 598, 1109, 1320
BstAPI GCANNNNNTGC 1 cut(s) 1064
BstBAI YACGTR 2 cut(s) 31, 1064
BstBI TTCGAA 1 cut(s) 1033
BstC8I GCNNGC 3 cut(s) 573, 657, 1069
BstDEI CTNAG 4 cut(s) 68, 297, 354, 1210
BstDSI CCRYGG 3 cut(s) 210, 283, 712
BstF5I GGATG 2 cut(s) 228, 334
BstKTI GATC 8 cut(s) 228, 247, 334, 429, 511, 705, 901, 1411
BstMAI GTCTC 4 cut(s) 5, 585, 852, 1110
BstMBI GATC 8 cut(s) 225, 244, 331, 426, 508, 702, 898, 1408
BstMWI GCNNNNNNNGC 4 cut(s) 128, 775, 1064, 1220
BstNI CCWGG 2 cut(s) 1220, 1389
BstNSI RCATGY 2 cut(s) 1071, 1175
BstSCI CCNGG 3 cut(s) 47, 1218, 1387
BstSFI CTRYAG 1 cut(s) 1200
BstSLI GKGCMC 1 cut(s) 54
BstV1I GCAGC 4 cut(s) 53, 115, 175, 1058
BstV2I GAAGAC 1 cut(s) 102
BstX2I RGATCY 1 cut(s) 426
BstYI RGATCY 1 cut(s) 426
Bsu36I CCTNAGG 1 cut(s) 297
BsuRI GGCC 5 cut(s) 52, 81, 393, 930, 936
BtgI CCRYGG 3 cut(s) 210, 283, 712
BtsCI GGATG 2 cut(s) 228, 334
BtsIMutI CAGTG 4 cut(s) 351, 848, 1361, 1422
BveI ACCTGC 1 cut(s) 448
Cac8I GCNNGC 3 cut(s) 573, 657, 1069
CaiI CAGNNNCTG 1 cut(s) 560
Cfr13I GGNCC 2 cut(s) 50, 51
CseI GACGC 1 cut(s) 33
Csp6I GTAC 2 cut(s) 192, 1414
CviQI GTAC 2 cut(s) 192, 1414
DdeI CTNAG 4 cut(s) 68, 297, 354, 1210
DpnI GATC 8 cut(s) 227, 246, 333, 428, 510, 704, 900, 1410
DpnII GATC 8 cut(s) 225, 244, 331, 426, 508, 702, 898, 1408
EaeI YGGCCR 2 cut(s) 391, 934
Eco130I CCWWGG 2 cut(s) 931, 1152
Eco24I GRGCYC 2 cut(s) 54, 69
Eco31I GGTCTC 1 cut(s) 852
Eco57I CTGAAG 3 cut(s) 1275, 1314, 1329
Eco81I CCTNAGG 1 cut(s) 297
Eco88I CYCGRG 1 cut(s) 61
EcoO109I RGGNCCY 1 cut(s) 51
EcoRI GAATTC 2 cut(s) 492, 1373
EcoRII CCWGG 2 cut(s) 1218, 1387
EcoT14I CCWWGG 2 cut(s) 931, 1152
EcoT22I ATGCAT 2 cut(s) 846, 1060
EcoT38I GRGCYC 2 cut(s) 54, 69
ErhI CCWWGG 2 cut(s) 931, 1152
Esp3I CGTCTC 1 cut(s) 5
FalI AAGNNNNNCTT 4 cut(s) 152, 184, 866, 898
FaqI GGGAC 1 cut(s) 626
FbaI TGATCA 3 cut(s) 225, 331, 702
Fnu4HI GCNGC 4 cut(s) 42, 129, 164, 1072
FokI GGATG 2 cut(s) 215, 321
FriOI GRGCYC 2 cut(s) 54, 69
Fsp4HI GCNGC 4 cut(s) 42, 129, 164, 1072
FspBI CTAG 1 cut(s) 1184
GluI GCNGC 4 cut(s) 42, 129, 164, 1072
GsaI CCCAGC 1 cut(s) 143
HaeIII GGCC 5 cut(s) 52, 81, 393, 930, 936
HapII CCGG 3 cut(s) 5, 48, 454
HgaI GACGC 1 cut(s) 33
HincII GTYRAC 1 cut(s) 822
HindII GTYRAC 1 cut(s) 822
HindIII AAGCTT 2 cut(s) 767, 1145
HinfI GANTC 6 cut(s) 272, 302, 853, 1096, 1102, 1299
HpaII CCGG 3 cut(s) 5, 48, 454
HphI GGTGA 7 cut(s) 472, 668, 731, 1052, 1097, 1409, 1418
Hpy166II GTNNAC 2 cut(s) 676, 822
Hpy188III TCNNGA 8 cut(s) 186, 242, 269, 338, 629, 857, 1184, 1253
Hpy8I GTNNAC 2 cut(s) 676, 822
Hpy99I CGWCG 1 cut(s) 438
HpyAV CCTTC 2 cut(s) 178, 1289
HpyCH4III ACNGT 5 cut(s) 214, 284, 598, 1109, 1320
HpyCH4IV ACGT 4 cut(s) 30, 97, 514, 1063
HpyF10VI GCNNNNNNNGC 4 cut(s) 128, 775, 1064, 1220
HpyF3I CTNAG 4 cut(s) 68, 297, 354, 1210
HpySE526I ACGT 4 cut(s) 30, 97, 514, 1063
Ksp22I TGATCA 3 cut(s) 225, 331, 702
Kzo9I GATC 8 cut(s) 225, 244, 331, 426, 508, 702, 898, 1408
LmnI GCTCC 1 cut(s) 922
Lsp1109I GCAGC 4 cut(s) 53, 115, 175, 1058
LweI GCATC 4 cut(s) 113, 331, 547, 986
MaeI CTAG 1 cut(s) 1184
MaeII ACGT 4 cut(s) 30, 97, 514, 1063
MaeIII GTNAC 3 cut(s) 964, 1205, 1339
MalI GATC 8 cut(s) 227, 246, 333, 428, 510, 704, 900, 1410
MboI GATC 8 cut(s) 225, 244, 331, 426, 508, 702, 898, 1408
MboII GAAGA 4 cut(s) 102, 550, 1345, 1382
MfeI CAATTG 1 cut(s) 1026
MflI RGATCY 1 cut(s) 426
MhlI GDGCHC 2 cut(s) 54, 69
MlsI TGGCCA 2 cut(s) 393, 936
MluNI TGGCCA 2 cut(s) 393, 936
MmeI TCCRAC 2 cut(s) 256, 995
Mox20I TGGCCA 2 cut(s) 393, 936
Mph1103I ATGCAT 2 cut(s) 846, 1060
MscI TGGCCA 2 cut(s) 393, 936
MseI TTAA 2 cut(s) 423, 1274
MslI CAYNNNNRTG 2 cut(s) 339, 1110
Msp20I TGGCCA 2 cut(s) 393, 936
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 3 cut(s) 5, 48, 454
MspR9I CCNGG 3 cut(s) 49, 1220, 1389
MunI CAATTG 1 cut(s) 1026
Mva1269I GAATGC 1 cut(s) 469
MvaI CCWGG 2 cut(s) 1220, 1389
MwoI GCNNNNNNNGC 4 cut(s) 128, 775, 1064, 1220
NciI CCSGG 1 cut(s) 49
NdeII GATC 8 cut(s) 225, 244, 331, 426, 508, 702, 898, 1408
NlaIV GGNNCC 2 cut(s) 52, 53
NmuCI GTSAC 1 cut(s) 1339
NsiI ATGCAT 2 cut(s) 846, 1060
NspI RCATGY 2 cut(s) 1071, 1175
NspV TTCGAA 1 cut(s) 1033
PaeI GCATGC 1 cut(s) 1071
PaqCI CACCTGC 1 cut(s) 448
PciI ACATGT 1 cut(s) 1171
PcsI WCGNNNNNNNCGW 1 cut(s) 907
PctI GAATGC 1 cut(s) 469
PfeI GAWTC 6 cut(s) 272, 302, 853, 1096, 1102, 1299
PflFI GACNNNGTC 1 cut(s) 1190
PkrI GCNGC 4 cut(s) 43, 130, 165, 1073
Ppu21I YACGTR 2 cut(s) 31, 1064
PscI ACATGT 1 cut(s) 1171
Psp6I CCWGG 2 cut(s) 1218, 1387
PspFI CCCAGC 1 cut(s) 139
PspGI CCWGG 2 cut(s) 1218, 1387
PspN4I GGNNCC 2 cut(s) 52, 53
PspOMI GGGCCC 1 cut(s) 50
PspPI GGNCC 2 cut(s) 50, 51
PsrI GAACNNNNNNTAC 2 cut(s) 1221, 1253
PstNI CAGNNNCTG 1 cut(s) 560
PsuI RGATCY 1 cut(s) 426
PsyI GACNNNGTC 1 cut(s) 1190
RsaI GTAC 2 cut(s) 193, 1415
RsaNI GTAC 2 cut(s) 192, 1414
RseI CAYNNNNRTG 2 cut(s) 339, 1110
SaqAI TTAA 2 cut(s) 423, 1274
SatI GCNGC 4 cut(s) 42, 129, 164, 1072
Sau3AI GATC 8 cut(s) 225, 244, 331, 426, 508, 702, 898, 1408
Sau96I GGNCC 2 cut(s) 50, 51
ScrFI CCNGG 3 cut(s) 49, 1220, 1389
SduI GDGCHC 2 cut(s) 54, 69
SfaNI GCATC 4 cut(s) 113, 331, 547, 986
SfcI CTRYAG 1 cut(s) 1200
SfuI TTCGAA 1 cut(s) 1033
SmiMI CAYNNNNRTG 2 cut(s) 339, 1110
SphI GCATGC 1 cut(s) 1071
SsiI CCGC 1 cut(s) 126
SspI AATATT 1 cut(s) 1269
SspMI CTAG 1 cut(s) 1184
StyD4I CCNGG 3 cut(s) 47, 1218, 1387
StyI CCWWGG 2 cut(s) 931, 1152
TaaI ACNGT 5 cut(s) 214, 284, 598, 1109, 1320
TaiI ACGT 4 cut(s) 33, 100, 517, 1066
TaqI TCGA 4 cut(s) 433, 549, 856, 1033
TaqII GACCGA 1 cut(s) 876
TfiI GAWTC 6 cut(s) 272, 302, 853, 1096, 1102, 1299
Tru1I TTAA 2 cut(s) 423, 1274
Tru9I TTAA 2 cut(s) 423, 1274
TscAI CASTG 4 cut(s) 358, 855, 1368, 1429
TseFI GTSAC 1 cut(s) 1339
TseI GCWGC 4 cut(s) 41, 128, 163, 1071
Tsp45I GTSAC 1 cut(s) 1339
TspDTI ATGAA 4 cut(s) 264, 545, 551, 1383
TspGWI ACGGA 1 cut(s) 1367
TspRI CASTG 4 cut(s) 358, 855, 1368, 1429
Tth111I GACNNNGTC 1 cut(s) 1190
XapI RAATTY 4 cut(s) 492, 792, 1373, 1400
XbaI TCTAGA 1 cut(s) 1183
XceI RCATGY 2 cut(s) 1071, 1175
XspI CTAG 1 cut(s) 1184
Zsp2I ATGCAT 2 cut(s) 846, 1060
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.