pycom111g01070

Belongs to the uridine kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0003508
Physical Location & Seq
Reverse (-)
683953 .. 686985
3033 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g01070.4

Sequence Viewer

Length: 1041 bp
ATGTCGGAGAACGCGATGACGATTGACTACGTGATGGAGAAAGCTGCTGGTCCCCACTTTTCGGGGCTCCGGTTCGACAGCATCCTCTCCTCTCCGCCACCTTCTTCGTCTCCCGGCCCTTCTACCAACCTCGCAGCCGCCCCCCACGCCGCCAAACAGCCATTCGTCATCGGTGTTTCGGGAGGTACGGCTTCCGGTAAGACGACAGTGTGCGACATGATCATCCAGCAGCTTCACGATCATCGTGTCGTACTTGTCAATCAGGATTCATTTTATCGAGGTTTGACACCCGAGGAATCGGAACGAGTGCATGAGTATAATTTTGATCATCCTGACGCTTTTGACACCGAACAACTCTTGGATTGCATTCAAAAGCTAAAGAACGGGCAATCTGTCCAAGTTCCAATTTATGATTTTAAGACACATAGACGAAAATCTGATAGTTTCCGGCAGGTGAATGCTTCTGATGTAATAATCTTGGAAGGAATTCTGGTGTTCCATGACCAACATGTCCGCAATCTAATGAACATGAAGATTTTTGTCCATACTGATGCTGATGTGAGGCTTGCTCGTAGAATAAGACGAGACACGGTTGAGAGGGGCAGGGACATTAACTCTGTTCTTGAAATGTATGCCAAGTTCGTCAAACCTTCTTTTGATGATTTTATTCACCCATCAAAGAAGTATGCTGATGTGATCATTCCCCTGGGAGGTGAGAATCATGTTGCCATTGATTTGATTGTGCAACATATTCGCACAAAGCTTGGTCAGCATGACCTCTGCAAAATATATCCTAATGTGTACGTTATTCAGTCCACATTTCAGATAAGAGGTATGCATACACTGATTCGAGACCGAGAAATATCGAAACATGATTTTGTATTTTATTCAGATCGGCTAATACGTCTGGTTGTGGAGCATGGCCTTGGCCATTTGCCATTCACAGAGAAGCAAATAATAACTCCAACAGGATCAGTATATACTGGGGTGGATTTCTGCAAGAAACTGTGTGGGGTTTCAATGTTCGAAGGTGAACGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004845 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006109 GO:0006139 GO:0006206 GO:0006207 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010138 GO:0010556 GO:0010675 GO:0010962 GO:0016301 GO:0016310 GO:0016740 GO:0016757 GO:0016763 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019222 GO:0019438 GO:0019637 GO:0019693 GO:0019856 GO:0031323 GO:0031326 GO:0032262 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043173 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0044206 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046112 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0050789 GO:0050794 GO:0055086 GO:0060255 GO:0065007 GO:0071704 GO:0072527 GO:0072528 GO:0080090 GO:0090407 GO:1900376 GO:1901135 GO:1901137 GO:1901141 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:2000112 GO:2000762 GO:2000904 GO:2001006
KEGG Pathways
Metabolic & Signaling
ko00030 ko00040 ko00240 ko00710 ko00983 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00240 map00710 map00983 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PRK UPRTase

Protein Analysis

347

Amino Acids

39.22

Weight (kDa)

6.81

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 442
AasI GACNNNNNNGTC 1 cut(s) 509
Acc36I ACCTGC 1 cut(s) 442
AccII CGCG 1 cut(s) 14
AciI CCGC 4 cut(s) 95, 138, 150, 514
AclI AACGTT 1 cut(s) 1036
AclWI GGATC 1 cut(s) 979
AcoI YGGCCR 1 cut(s) 928
AcsI RAATTY 1 cut(s) 486
AfaI GTAC 3 cut(s) 187, 252, 803
AfiI CCNNNNNNNGG 2 cut(s) 61, 710
AflIII ACRYGT 1 cut(s) 508
AgsI TTSAA 3 cut(s) 371, 626, 1020
AjnI CCWGG 1 cut(s) 705
AjuI GAANNNNNNNTTGG 2 cut(s) 146, 178
AluBI AGCT 4 cut(s) 44, 232, 376, 763
AluI AGCT 4 cut(s) 44, 232, 376, 763
Alw26I GTCTC 3 cut(s) 114, 579, 846
AlwI GGATC 1 cut(s) 979
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 3 cut(s) 115, 922, 928
ApeKI GCWGC 3 cut(s) 44, 134, 229
ApoI RAATTY 1 cut(s) 486
Asp700I GAANNNNTTC 1 cut(s) 486
AspS9I GGNCC 2 cut(s) 50, 116
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 3 cut(s) 466, 662, 725
AsuII TTCGAA 1 cut(s) 1026
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 1 cut(s) 50
BalI TGGCCA 1 cut(s) 930
BanII GRGCYC 1 cut(s) 69
BbvI GCAGC 3 cut(s) 31, 146, 241
BccI CCATC 2 cut(s) 28, 682
BceAI ACGGC 1 cut(s) 204
BcgI CGANNNNNNTGC 2 cut(s) 734, 768
BciT130I CCWGG 1 cut(s) 707
BclI TGATCA 3 cut(s) 219, 325, 696
BcnI CCSGG 1 cut(s) 114
BcoDI GTCTC 3 cut(s) 114, 579, 846
BfuAI ACCTGC 1 cut(s) 442
BisI GCNGC 5 cut(s) 45, 135, 138, 150, 230
BlsI GCNGC 5 cut(s) 46, 136, 139, 151, 231
Bme1390I CCNGG 2 cut(s) 114, 707
Bme18I GGWCC 1 cut(s) 50
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 2 cut(s) 50, 116
BmiI GGNNCC 2 cut(s) 52, 68
BmrFI CCNGG 2 cut(s) 114, 707
BmrI ACTGGG 1 cut(s) 993
BmsI GCATC 2 cut(s) 90, 541
BmuI ACTGGG 1 cut(s) 993
BplI GAGNNNNNCTC 2 cut(s) 553, 585
Bpu14I TTCGAA 1 cut(s) 1026
BpuMI CCSGG 1 cut(s) 114
BsaAI YACGTR 1 cut(s) 31
BsaI GGTCTC 1 cut(s) 846
BsaJI CCNNGG 4 cut(s) 291, 705, 706, 925
BsaWI WCCGGW 2 cut(s) 69, 194
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 710
Bse1I ACTGG 1 cut(s) 988
BseBI CCWGG 1 cut(s) 707
BseDI CCNNGG 4 cut(s) 291, 705, 706, 925
BseGI GGATG 3 cut(s) 81, 222, 328
BseLI CCNNNNNNNGG 2 cut(s) 61, 710
BseNI ACTGG 1 cut(s) 988
BseRI GAGGAG 1 cut(s) 79
BseXI GCAGC 3 cut(s) 31, 146, 241
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 3 cut(s) 117, 924, 930
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 4 cut(s) 70, 114, 195, 448
BslFI GGGAC 2 cut(s) 36, 620
BslI CCNNNNNNNGG 2 cut(s) 61, 710
BsmAI GTCTC 3 cut(s) 114, 579, 846
BsmBI CGTCTC 1 cut(s) 114
BsmFI GGGAC 2 cut(s) 36, 620
BsmI GAATGC 2 cut(s) 366, 463
BsnI GGCC 3 cut(s) 117, 924, 930
Bso31I GGTCTC 1 cut(s) 846
BsoBI CYCGRG 1 cut(s) 290
Bsp119I TTCGAA 1 cut(s) 1026
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 6 cut(s) 219, 238, 325, 696, 892, 971
BspACI CCGC 4 cut(s) 95, 138, 150, 514
BspANI GGCC 3 cut(s) 117, 924, 930
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 2 cut(s) 52, 68
BspMI ACCTGC 1 cut(s) 442
BspPI GGATC 1 cut(s) 979
BspT104I TTCGAA 1 cut(s) 1026
BspTNI GGTCTC 1 cut(s) 846
BsrI ACTGG 1 cut(s) 988
BssECI CCNNGG 4 cut(s) 291, 705, 706, 925
BssMI GATC 6 cut(s) 219, 238, 325, 696, 892, 971
BssT1I CCWWGG 1 cut(s) 925
Bst2UI CCWGG 1 cut(s) 707
Bst4CI ACNGT 3 cut(s) 208, 592, 1008
BstBAI YACGTR 1 cut(s) 31
BstBI TTCGAA 1 cut(s) 1026
BstC8I GCNNGC 1 cut(s) 567
BstF5I GGATG 3 cut(s) 81, 222, 328
BstFNI CGCG 1 cut(s) 14
BstKTI GATC 6 cut(s) 222, 241, 328, 699, 895, 974
BstMAI GTCTC 3 cut(s) 114, 579, 846
BstMBI GATC 6 cut(s) 219, 238, 325, 696, 892, 971
BstMWI GCNNNNNNNGC 2 cut(s) 146, 769
BstNI CCWGG 1 cut(s) 707
BstNSI RCATGY 1 cut(s) 512
BstSCI CCNGG 2 cut(s) 112, 705
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 3 cut(s) 31, 146, 241
BsuRI GGCC 3 cut(s) 117, 924, 930
BtgZI GCGATG 1 cut(s) 29
BtsCI GGATG 3 cut(s) 81, 222, 328
BtsIMutI CAGTG 2 cut(s) 213, 842
BveI ACCTGC 1 cut(s) 442
Cac8I GCNNGC 1 cut(s) 567
Cfr13I GGNCC 2 cut(s) 50, 116
CseI GACGC 1 cut(s) 344
Csp6I GTAC 3 cut(s) 186, 251, 802
CviAII CATG 9 cut(s) 217, 311, 500, 509, 529, 722, 773, 872, 920
CviQI GTAC 3 cut(s) 186, 251, 802
DpnI GATC 6 cut(s) 221, 240, 327, 698, 894, 973
DpnII GATC 6 cut(s) 219, 238, 325, 696, 892, 971
DrdI GACNNNNNNGTC 1 cut(s) 509
DseDI GACNNNNNNGTC 1 cut(s) 509
EaeI YGGCCR 1 cut(s) 928
EciI GGCGGA 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 925
Eco24I GRGCYC 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 846
Eco47I GGWCC 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 290
EcoRI GAATTC 1 cut(s) 486
EcoRII CCWGG 1 cut(s) 705
EcoT14I CCWWGG 1 cut(s) 925
EcoT22I ATGCAT 1 cut(s) 840
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 925
Esp3I CGTCTC 1 cut(s) 114
FaeI CATG 9 cut(s) 220, 314, 503, 512, 532, 725, 776, 875, 923
FaqI GGGAC 2 cut(s) 36, 620
FatI CATG 9 cut(s) 216, 310, 499, 508, 528, 721, 772, 871, 919
FbaI TGATCA 3 cut(s) 219, 325, 696
Fnu4HI GCNGC 5 cut(s) 45, 135, 138, 150, 230
FokI GGATG 3 cut(s) 68, 209, 315
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 5 cut(s) 45, 135, 138, 150, 230
GluI GCNGC 5 cut(s) 45, 135, 138, 150, 230
HaeIII GGCC 3 cut(s) 117, 924, 930
HapII CCGG 4 cut(s) 70, 114, 195, 448
HgaI GACGC 1 cut(s) 344
Hin1II CATG 9 cut(s) 220, 314, 503, 512, 532, 725, 776, 875, 923
HindIII AAGCTT 1 cut(s) 761
HinfI GANTC 4 cut(s) 266, 296, 718, 847
HpaII CCGG 4 cut(s) 70, 114, 195, 448
HphI GGTGA 3 cut(s) 466, 662, 725
Hpy166II GTNNAC 3 cut(s) 802, 816, 1034
Hpy188I TCNGA 6 cut(s) 7, 301, 439, 466, 825, 892
Hpy188III TCNNGA 6 cut(s) 180, 236, 263, 332, 623, 851
Hpy8I GTNNAC 3 cut(s) 802, 816, 1034
HpyAV CCTTC 5 cut(s) 111, 129, 476, 660, 1022
HpyCH4III ACNGT 3 cut(s) 208, 592, 1008
HpyCH4IV ACGT 4 cut(s) 30, 804, 904, 1036
HpyCH4V TGCA 6 cut(s) 310, 366, 745, 783, 838, 999
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 769
HpySE526I ACGT 4 cut(s) 30, 804, 904, 1036
Hsp92II CATG 9 cut(s) 220, 314, 503, 512, 532, 725, 776, 875, 923
Ksp22I TGATCA 3 cut(s) 219, 325, 696
Kzo9I GATC 6 cut(s) 219, 238, 325, 696, 892, 971
LmnI GCTCC 2 cut(s) 72, 916
Lsp1109I GCAGC 3 cut(s) 31, 146, 241
LweI GCATC 2 cut(s) 90, 541
MaeII ACGT 4 cut(s) 30, 804, 904, 1036
MalI GATC 6 cut(s) 221, 240, 327, 698, 894, 973
MboI GATC 6 cut(s) 219, 238, 325, 696, 892, 971
MboII GAAGA 2 cut(s) 96, 544
MhlI GDGCHC 1 cut(s) 69
MlsI TGGCCA 1 cut(s) 930
MluCI AATT 3 cut(s) 319, 405, 486
MluNI TGGCCA 1 cut(s) 930
MmeI TCCRAC 1 cut(s) 989
Mox20I TGGCCA 1 cut(s) 930
Mph1103I ATGCAT 1 cut(s) 840
MroXI GAANNNNTTC 1 cut(s) 486
MscI TGGCCA 1 cut(s) 930
MseI TTAA 3 cut(s) 417, 612, 1039
MslI CAYNNNNRTG 1 cut(s) 549
Msp20I TGGCCA 1 cut(s) 930
MspI CCGG 4 cut(s) 70, 114, 195, 448
MspR9I CCNGG 2 cut(s) 114, 707
Mva1269I GAATGC 2 cut(s) 366, 463
MvaI CCWGG 1 cut(s) 707
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 146, 769
NciI CCSGG 1 cut(s) 114
NdeII GATC 6 cut(s) 219, 238, 325, 696, 892, 971
NlaIII CATG 9 cut(s) 220, 314, 503, 512, 532, 725, 776, 875, 923
NlaIV GGNNCC 2 cut(s) 52, 68
NsiI ATGCAT 1 cut(s) 840
NspI RCATGY 1 cut(s) 512
NspV TTCGAA 1 cut(s) 1026
PaqCI CACCTGC 1 cut(s) 442
PasI CCCWGGG 1 cut(s) 706
PciI ACATGT 1 cut(s) 508
PcsI WCGNNNNNNNCGW 2 cut(s) 11, 901
PctI GAATGC 2 cut(s) 366, 463
PdmI GAANNNNTTC 1 cut(s) 486
PfeI GAWTC 4 cut(s) 266, 296, 718, 847
PkrI GCNGC 5 cut(s) 46, 136, 139, 151, 231
Ppu21I YACGTR 1 cut(s) 31
PscI ACATGT 1 cut(s) 508
Psp1406I AACGTT 1 cut(s) 1036
Psp6I CCWGG 1 cut(s) 705
PspGI CCWGG 1 cut(s) 705
PspN4I GGNNCC 2 cut(s) 52, 68
PspPI GGNCC 2 cut(s) 50, 116
PsrI GAACNNNNNNTAC 2 cut(s) 623, 655
RsaI GTAC 3 cut(s) 187, 252, 803
RsaNI GTAC 3 cut(s) 186, 251, 802
RseI CAYNNNNRTG 1 cut(s) 549
SaqAI TTAA 3 cut(s) 417, 612, 1039
SatI GCNGC 5 cut(s) 45, 135, 138, 150, 230
Sau3AI GATC 6 cut(s) 219, 238, 325, 696, 892, 971
Sau96I GGNCC 2 cut(s) 50, 116
ScrFI CCNGG 2 cut(s) 114, 707
SduI GDGCHC 1 cut(s) 69
SfaNI GCATC 2 cut(s) 90, 541
SfuI TTCGAA 1 cut(s) 1026
SinI GGWCC 1 cut(s) 50
SmiMI CAYNNNNRTG 1 cut(s) 549
Sse9I AATT 3 cut(s) 319, 405, 486
SsiI CCGC 4 cut(s) 95, 138, 150, 514
StyD4I CCNGG 2 cut(s) 112, 705
StyI CCWWGG 1 cut(s) 925
TaaI ACNGT 3 cut(s) 208, 592, 1008
TaiI ACGT 4 cut(s) 33, 807, 907, 1039
TaqI TCGA 5 cut(s) 75, 277, 850, 866, 1026
TaqII GACCGA 1 cut(s) 870
TasI AATT 3 cut(s) 319, 405, 486
TauI GCSGC 2 cut(s) 140, 152
TfiI GAWTC 4 cut(s) 266, 296, 718, 847
Tru1I TTAA 3 cut(s) 417, 612, 1039
Tru9I TTAA 3 cut(s) 417, 612, 1039
TscAI CASTG 2 cut(s) 213, 849
TseI GCWGC 3 cut(s) 44, 134, 229
TspDTI ATGAA 3 cut(s) 258, 539, 545
TspRI CASTG 2 cut(s) 213, 849
VpaK11BI GGWCC 1 cut(s) 50
XapI RAATTY 1 cut(s) 486
XceI RCATGY 1 cut(s) 512
XmnI GAANNNNTTC 1 cut(s) 486
Zsp2I ATGCAT 1 cut(s) 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.