Rh5AG496000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003508
Physical Location & Seq
Reverse (-)
84290276 .. 84293642
3367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG496000.1

Sequence Viewer

Length: 195 bp
ATGGAGTTCTATAAATCTTTTCTTGAGACAAGAAGACCGCAATTACCGTGCGTTGTCAACACATGCAATAGTTCCTCCTCTAATAGACATCGCCTAAAAAGCGCGGGTCCCACCTCTGATTCAGTGCCACGCAGGACAGCTCAGTCTGACGTCCCACAAATATCAAAGAACAAGAGCGGTGGCCCCCGGACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.09

Weight (kDa)

10.52

Isoelectric Point (pI)

71.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 142
AatII GACGTC 1 cut(s) 153
AccBSI CCGCTC 1 cut(s) 177
AccII CGCG 1 cut(s) 104
AciI CCGC 3 cut(s) 38, 104, 177
AcyI GRCGYC 1 cut(s) 150
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
Alw26I GTCTC 1 cut(s) 20
AoxI GGCC 1 cut(s) 181
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 2 cut(s) 107, 182
AsuC2I CCSGG 1 cut(s) 187
AvaII GGWCC 1 cut(s) 107
BbsI GAAGAC 1 cut(s) 40
BcnI CCSGG 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 20
Bme1390I CCNGG 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 2 cut(s) 107, 182
BmiI GGNNCC 3 cut(s) 108, 109, 184
BmrFI CCNGG 1 cut(s) 187
BpiI GAAGAC 1 cut(s) 40
BpuEI CTTGAG 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 187
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 185
BseDI CCNNGG 1 cut(s) 185
BseMII CTCAG 1 cut(s) 155
BseRI GAGGAG 1 cut(s) 67
Bsh1236I CGCG 1 cut(s) 104
BshFI GGCC 1 cut(s) 183
BsiSI CCGG 1 cut(s) 187
BslFI GGGAC 2 cut(s) 93, 137
BsmAI GTCTC 1 cut(s) 20
BsmFI GGGAC 2 cut(s) 93, 137
BsnI GGCC 1 cut(s) 183
BspACI CCGC 3 cut(s) 38, 104, 177
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 1 cut(s) 154
BspFNI CGCG 1 cut(s) 104
BspLI GGNNCC 3 cut(s) 108, 109, 184
BsrBI CCGCTC 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 185
BssNI GRCGYC 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 48
BstACI GRCGYC 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 141
BstFNI CGCG 1 cut(s) 104
BstHHI GCGC 1 cut(s) 104
BstMAI GTCTC 1 cut(s) 20
BstMWI GCNNNNNNNGC 1 cut(s) 99
BstNSI RCATGY 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 185
BstUI CGCG 1 cut(s) 104
BstV2I GAAGAC 1 cut(s) 40
BsuRI GGCC 1 cut(s) 183
BtgZI GCGATG 1 cut(s) 74
BtsIMutI CAGTG 1 cut(s) 129
CfoI GCGC 1 cut(s) 104
Cfr13I GGNCC 2 cut(s) 107, 182
CspCI CAANNNNNGTGG 2 cut(s) 160, 195
CviAII CATG 1 cut(s) 63
CviJI RGCY 2 cut(s) 140, 183
CviKI_1 RGCY 2 cut(s) 140, 183
DdeI CTNAG 1 cut(s) 141
DrdI GACNNNNNNGTC 1 cut(s) 142
DseDI GACNNNNNNGTC 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 107
EcoO109I RGGNCCY 1 cut(s) 107
FaeI CATG 1 cut(s) 66
FaiI YATR 2 cut(s) 12, 64
FaqI GGGAC 2 cut(s) 93, 137
FatI CATG 1 cut(s) 62
FauI CCCGC 1 cut(s) 97
GlaI GCGC 1 cut(s) 103
HaeIII GGCC 1 cut(s) 183
HapII CCGG 1 cut(s) 187
HhaI GCGC 1 cut(s) 104
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 1 cut(s) 66
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HinfI GANTC 1 cut(s) 119
HpaII CCGG 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 2 cut(s) 118, 148
Hpy188III TCNNGA 1 cut(s) 23
Hpy8I GTNNAC 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 48
HpyCH4IV ACGT 2 cut(s) 150, 191
HpyCH4V TGCA 1 cut(s) 66
HpyF10VI GCNNNNNNNGC 1 cut(s) 99
HpyF3I CTNAG 1 cut(s) 141
HpySE526I ACGT 2 cut(s) 150, 191
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 1 cut(s) 66
HspAI GCGC 1 cut(s) 102
KflI GGGWCCC 1 cut(s) 107
LpnPI CCDG 1 cut(s) 118
MaeII ACGT 2 cut(s) 150, 191
MbiI CCGCTC 1 cut(s) 177
MboII GAAGA 1 cut(s) 45
MluCI AATT 1 cut(s) 41
MnlI CCTC 3 cut(s) 85, 88, 124
MspI CCGG 1 cut(s) 187
MspR9I CCNGG 1 cut(s) 187
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 99
NciI CCSGG 1 cut(s) 187
NlaIII CATG 1 cut(s) 66
NlaIV GGNNCC 3 cut(s) 108, 109, 184
NspI RCATGY 1 cut(s) 66
PfeI GAWTC 1 cut(s) 119
PpuMI RGGWCCY 1 cut(s) 107
Psp5II RGGWCCY 1 cut(s) 107
PspN4I GGNNCC 3 cut(s) 108, 109, 184
PspPI GGNCC 2 cut(s) 107, 182
PspPPI RGGWCCY 1 cut(s) 107
Sau96I GGNCC 2 cut(s) 107, 182
ScrFI CCNGG 1 cut(s) 187
SetI ASST 4 cut(s) 116, 142, 153, 194
SgeI CNNG 9 cut(s) 35, 42, 60, 75, 115, 117, 141, 145, 184
SinI GGWCC 1 cut(s) 107
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 1 cut(s) 41
SsiI CCGC 3 cut(s) 38, 104, 177
StyD4I CCNGG 1 cut(s) 185
TaaI ACNGT 1 cut(s) 48
TaiI ACGT 2 cut(s) 153, 194
TasI AATT 1 cut(s) 41
TfiI GAWTC 1 cut(s) 119
TscAI CASTG 1 cut(s) 129
TspRI CASTG 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 107
XceI RCATGY 1 cut(s) 66
ZraI GACGTC 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.