Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003508

Physical Location & Seq

Genomic Coordinates Reverse (-)

60740322 .. 60745385

Gene Structure 5064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51313

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAATTCTATTTCTCTACTCTCAAGTGGAAACGCATTTGACACCGAACAGATGTTAGAATGTGTTCAAAAGTTAAAGTGCGGGCAGTCTGTCCAAGTTCCAATTTATGATTTTAAGATACATCGACGCTGTTCTGATACTTTTCGCCAGGTGAATGCTTCCGATGTCATCATCTTGGAGGGAATTCTGGTTTTCCATGACCAGCGCGTACGTAATTTGATGAACATGAAGATCTTTGTCGACACAGATGCTGATGTCAGACTTGCTCGTAGAATAGGACGAGACACTGTTGAGAGGGGCAGGGACATTGACTCTGTTCTTGAGCAGTATGCCAAGTTTGTCAAGCCTGCTTTTGATGATTTTGTTCTCCCCTCAAAGAAGTACGCTGATGTGATTATTCCCCGGGGAGGCGATAACCATGTTGCTATTGATTTAATTGTACAACATATTCGGACAAAGCTTGGTCAGCATGATCTTTGCAAAATATATCCTAATGTGTACGTTATACAGTCCACATTTCAGATTAGAGGCATGCATACACTGATTCGAGACCGAGAAATATCAAAGCATGATTTTGTATTTTATTCAGATCGCCTAATTCGTCTGGTTGTGGAGCATGGCCTTGGTCATTTGCCATTCATAGAGAAACAACTAATAACTCCACCAGGATCTGTTTATACTGGGGTTGATTTCTGCAAGAAATTATGTGGAGTTTCAATTGTTCGAAGTGGTGAGAGCATGGAAAATGCATTGCGTGCATTTTGCAAAGGTATAAAAATTGGGAACATCTTGATTCATCGTGATGCAGACGATGGCAAACAGCTTATATATGAGAAGCTCCCCAAGGATATTTCAGAGCGTCATGTCCTGCTTTTAGACCCTGTACTTGCTAAAGATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

300

Amino Acids

34.25

Weight (kDa)

8.59

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRK	PF00485	9 - 141	2.7e-40	Phosphoribulokinase / Uridine kinase family
UPRTase	PF14681	171 - 297	2.5e-39	Uracil phosphoribosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27190 AT5G40870
fragaria_vesca	FvH4_6g53220
malus_domestica	MD09G1012900.v1.1 MD17G1013500.v1.1
prunus_persica	Prupe.3G304300_v2.0.a1
pyrus_communis	pycom111g01070 pycom17g01080
rosa_chinensis	RchiOBHm_Chr2g0143031 RchiOBHm_Chr2g0143071 RchiOBHm_Chr2g0175311
rosa_laevigata	RLG00000020006 RLG00000022319
rosa_multiflora	Rmu_sc0003512.1_g000003
rosa_roxburghii	Rroxscaffold_2G00077440 Rroxscaffold_2G00102120 Rroxscaffold_2G00102150
rosa_rugosa	Rorug02G0377700 Rorug02G0582700
rosa_samantha	Rh2AG401300 Rh2AG430800 Rh2AG663000 Rh2AG663400 Rh2BG197300 Rh2BG439700 Rh2BG674200 Rh2BG674300 Rh2CG387500 Rh2CG416500 Rh2CG637300 Rh2DG450000 Rh5AG496000
rosa_wichuraiana	Rw2G035190 Rw2G035210 Rw2G054360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	240
AccII	CGCG	1 cut(s)	207
AciI	CCGC	1 cut(s)	81
AclWI	GGATC	1 cut(s)	676
AcsI	RAATTY	2 cut(s)	4, 183
AfaI	GTAC	5 cut(s)	210, 383, 441, 500, 885
AfiI	CCNNNNNNNGG	1 cut(s)	407
AgsI	TTSAA	2 cut(s)	68, 717
AjnI	CCWGG	2 cut(s)	147, 664
AluBI	AGCT	3 cut(s)	460, 823, 838
AluI	AGCT	3 cut(s)	460, 823, 838
Alw26I	GTCTC	2 cut(s)	276, 543
AlwI	GGATC	1 cut(s)	676
AlwNI	CAGNNNCTG	2 cut(s)	251, 671
Ama87I	CYCGRG	1 cut(s)	402
AoxI	GGCC	1 cut(s)	619
ApoI	RAATTY	2 cut(s)	4, 183
Asp700I	GAANNNNTTC	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	207
AsuC2I	CCSGG	2 cut(s)	403, 404
AsuHPI	GGTGA	2 cut(s)	163, 743
AsuII	TTCGAA	1 cut(s)	724
AvaI	CYCGRG	1 cut(s)	402
BccI	CCATC	1 cut(s)	806
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BciT130I	CCWGG	2 cut(s)	149, 666
BcnI	CCSGG	2 cut(s)	403, 404
BcoDI	GTCTC	2 cut(s)	276, 543
BglII	AGATCT	1 cut(s)	231
Bme1390I	CCNGG	4 cut(s)	149, 403, 404, 666
BmeT110I	CYCGRG	1 cut(s)	402
BmrFI	CCNGG	4 cut(s)	149, 403, 404, 666
BmrI	ACTGGG	1 cut(s)	690
BmsI	GCATC	2 cut(s)	238, 793
BmuI	ACTGGG	1 cut(s)	690
Bpu14I	TTCGAA	1 cut(s)	724
BpuEI	CTTGAG	2 cut(s)	7, 341
BpuMI	CCSGG	2 cut(s)	403, 404
BsaAI	YACGTR	1 cut(s)	212
BsaI	GGTCTC	1 cut(s)	543
BsaJI	CCNNGG	5 cut(s)	401, 402, 403, 622, 843
Bsc4I	CCNNNNNNNGG	1 cut(s)	407
Bse1I	ACTGG	1 cut(s)	685
Bse3DI	GCAATG	1 cut(s)	749
BseBI	CCWGG	2 cut(s)	149, 666
BseDI	CCNNGG	5 cut(s)	401, 402, 403, 622, 843
BseLI	CCNNNNNNNGG	1 cut(s)	407
BseMI	GCAATG	1 cut(s)	749
BseNI	ACTGG	1 cut(s)	685
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	621
BsiHKCI	CYCGRG	1 cut(s)	402
BsiSI	CCGG	1 cut(s)	403
BsiWI	CGTACG	1 cut(s)	208
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	407
BsmAI	GTCTC	2 cut(s)	276, 543
BsmFI	GGGAC	1 cut(s)	317
BsmI	GAATGC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	621
Bso31I	GGTCTC	1 cut(s)	543
BsoBI	CYCGRG	1 cut(s)	402
Bsp119I	TTCGAA	1 cut(s)	724
Bsp1407I	TGTACA	1 cut(s)	439
Bsp143I	GATC	4 cut(s)	231, 472, 589, 668
BspACI	CCGC	1 cut(s)	81
BspANI	GGCC	1 cut(s)	621
BspFNI	CGCG	1 cut(s)	207
BspPI	GGATC	1 cut(s)	676
BspT104I	TTCGAA	1 cut(s)	724
BspTNI	GGTCTC	1 cut(s)	543
BsrDI	GCAATG	1 cut(s)	749
BsrGI	TGTACA	1 cut(s)	439
BsrI	ACTGG	1 cut(s)	685
BssECI	CCNNGG	5 cut(s)	401, 402, 403, 622, 843
BssMI	GATC	4 cut(s)	231, 472, 589, 668
BssT1I	CCWWGG	2 cut(s)	622, 843
Bst2UI	CCWGG	2 cut(s)	149, 666
Bst4CI	ACNGT	2 cut(s)	289, 510
BstAPI	GCANNNNNTGC	1 cut(s)	755
BstAUI	TGTACA	1 cut(s)	439
BstBAI	YACGTR	1 cut(s)	212
BstBI	TTCGAA	1 cut(s)	724
BstC8I	GCNNGC	4 cut(s)	83, 348, 533, 756
BstFNI	CGCG	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	207
BstKTI	GATC	4 cut(s)	234, 475, 592, 671
BstMAI	GTCTC	2 cut(s)	276, 543
BstMBI	GATC	4 cut(s)	231, 472, 589, 668
BstMWI	GCNNNNNNNGC	2 cut(s)	466, 755
BstNI	CCWGG	2 cut(s)	149, 666
BstNSI	RCATGY	1 cut(s)	535
BstSCI	CCNGG	4 cut(s)	147, 401, 402, 664
BstSNI	TACGTA	1 cut(s)	212
BstUI	CGCG	1 cut(s)	207
BstX2I	RGATCY	2 cut(s)	231, 668
BstYI	RGATCY	2 cut(s)	231, 668
BsuRI	GGCC	1 cut(s)	621
BtsIMutI	CAGTG	2 cut(s)	285, 539
Cac8I	GCNNGC	4 cut(s)	83, 348, 533, 756
CaiI	CAGNNNCTG	2 cut(s)	251, 671
CfoI	GCGC	1 cut(s)	207
Cfr9I	CCCGGG	1 cut(s)	402
CseI	GACGC	2 cut(s)	135, 848
Csp6I	GTAC	5 cut(s)	209, 382, 440, 499, 884
CviAII	CATG	9 cut(s)	197, 226, 419, 470, 532, 569, 617, 739, 863
CviJI	RGCY	5 cut(s)	346, 460, 621, 823, 838
CviKI_1	RGCY	5 cut(s)	346, 460, 621, 823, 838
CviQI	GTAC	5 cut(s)	209, 382, 440, 499, 884
DpnI	GATC	4 cut(s)	233, 474, 591, 670
DpnII	GATC	4 cut(s)	231, 472, 589, 668
Eco105I	TACGTA	1 cut(s)	212
Eco130I	CCWWGG	2 cut(s)	622, 843
Eco31I	GGTCTC	1 cut(s)	543
Eco88I	CYCGRG	1 cut(s)	402
EcoRI	GAATTC	2 cut(s)	4, 183
EcoRII	CCWGG	2 cut(s)	147, 664
EcoT14I	CCWWGG	2 cut(s)	622, 843
EcoT22I	ATGCAT	2 cut(s)	537, 751
ErhI	CCWWGG	2 cut(s)	622, 843
FaeI	CATG	9 cut(s)	200, 229, 422, 473, 535, 572, 620, 742, 866
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	9 cut(s)	196, 225, 418, 469, 531, 568, 616, 738, 862
FauI	CCCGC	1 cut(s)	74
FblI	GTMKAC	1 cut(s)	240
GlaI	GCGC	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	621
HapII	CCGG	1 cut(s)	403
HgaI	GACGC	2 cut(s)	135, 848
HhaI	GCGC	1 cut(s)	207
Hin1II	CATG	9 cut(s)	200, 229, 422, 473, 535, 572, 620, 742, 866
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	3 cut(s)	311, 544, 793
HpaII	CCGG	1 cut(s)	403
HphI	GGTGA	2 cut(s)	163, 743
Hpy166II	GTNNAC	3 cut(s)	241, 499, 513
Hpy188I	TCNGA	7 cut(s)	136, 163, 260, 453, 522, 589, 856
Hpy188III	TCNNGA	4 cut(s)	320, 548, 790, 800
Hpy8I	GTNNAC	3 cut(s)	241, 499, 513
Hpy99I	CGWCG	1 cut(s)	129
HpyCH4III	ACNGT	2 cut(s)	289, 510
HpyCH4IV	ACGT	2 cut(s)	211, 501
HpyCH4V	TGCA	7 cut(s)	480, 535, 696, 749, 758, 765, 806
HpyF10VI	GCNNNNNNNGC	2 cut(s)	466, 755
HpySE526I	ACGT	2 cut(s)	211, 501
Hsp92II	CATG	9 cut(s)	200, 229, 422, 473, 535, 572, 620, 742, 866
HspAI	GCGC	1 cut(s)	205
Kzo9I	GATC	4 cut(s)	231, 472, 589, 668
LmnI	GCTCC	2 cut(s)	613, 843
LweI	GCATC	2 cut(s)	238, 793
MaeII	ACGT	2 cut(s)	211, 501
MalI	GATC	4 cut(s)	233, 474, 591, 670
MboI	GATC	4 cut(s)	231, 472, 589, 668
MboII	GAAGA	1 cut(s)	241
MfeI	CAATTG	1 cut(s)	717
MflI	RGATCY	2 cut(s)	231, 668
MluCI	AATT	9 cut(s)	4, 102, 183, 214, 435, 597, 701, 717, 777
MlyI	GAGTC	1 cut(s)	305
MnlI	CCTC	5 cut(s)	172, 288, 382, 401, 521
Mph1103I	ATGCAT	2 cut(s)	537, 751
MroXI	GAANNNNTTC	1 cut(s)	63
MseI	TTAA	3 cut(s)	74, 114, 434
MslI	CAYNNNNRTG	1 cut(s)	801
MspI	CCGG	1 cut(s)	403
MspR9I	CCNGG	4 cut(s)	149, 403, 404, 666
MunI	CAATTG	1 cut(s)	717
Mva1269I	GAATGC	1 cut(s)	160
MvaI	CCWGG	2 cut(s)	149, 666
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	2 cut(s)	466, 755
NciI	CCSGG	2 cut(s)	403, 404
NdeII	GATC	4 cut(s)	231, 472, 589, 668
NlaIII	CATG	9 cut(s)	200, 229, 422, 473, 535, 572, 620, 742, 866
NsiI	ATGCAT	2 cut(s)	537, 751
NspI	RCATGY	1 cut(s)	535
NspV	TTCGAA	1 cut(s)	724
PaeI	GCATGC	1 cut(s)	535
PcsI	WCGNNNNNNNCGW	1 cut(s)	598
PctI	GAATGC	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	544, 793
Pfl23II	CGTACG	1 cut(s)	208
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
Ppu21I	YACGTR	1 cut(s)	212
Psp6I	CCWGG	2 cut(s)	147, 664
PspGI	CCWGG	2 cut(s)	147, 664
PspLI	CGTACG	1 cut(s)	208
PstNI	CAGNNNCTG	2 cut(s)	251, 671
PsuI	RGATCY	2 cut(s)	231, 668
RsaI	GTAC	5 cut(s)	210, 383, 441, 500, 885
RsaNI	GTAC	5 cut(s)	209, 382, 440, 499, 884
RseI	CAYNNNNRTG	1 cut(s)	801
SalI	GTCGAC	1 cut(s)	239
SaqAI	TTAA	3 cut(s)	74, 114, 434
Sau3AI	GATC	4 cut(s)	231, 472, 589, 668
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	4 cut(s)	149, 403, 404, 666
SetI	ASST	7 cut(s)	153, 214, 462, 504, 772, 825, 840
SfaNI	GCATC	2 cut(s)	238, 793
SfuI	TTCGAA	1 cut(s)	724
SmaI	CCCGGG	1 cut(s)	404
SmiMI	CAYNNNNRTG	1 cut(s)	801
SmlI	CTYRAG	2 cut(s)	22, 320
SmoI	CTYRAG	2 cut(s)	22, 320
SnaBI	TACGTA	1 cut(s)	212
SphI	GCATGC	1 cut(s)	535
Sse9I	AATT	9 cut(s)	4, 102, 183, 214, 435, 597, 701, 717, 777
SsiI	CCGC	1 cut(s)	81
StyD4I	CCNGG	4 cut(s)	147, 401, 402, 664
StyI	CCWWGG	2 cut(s)	622, 843
TaaI	ACNGT	2 cut(s)	289, 510
TaiI	ACGT	2 cut(s)	214, 504
TaqI	TCGA	4 cut(s)	124, 240, 547, 724
TaqII	GACCGA	1 cut(s)	567
TasI	AATT	9 cut(s)	4, 102, 183, 214, 435, 597, 701, 717, 777
TatI	WGTACW	2 cut(s)	439, 883
TfiI	GAWTC	2 cut(s)	544, 793
Tru1I	TTAA	3 cut(s)	74, 114, 434
Tru9I	TTAA	3 cut(s)	74, 114, 434
TscAI	CASTG	2 cut(s)	292, 546
TspDTI	ATGAA	5 cut(s)	17, 236, 242, 628, 785
TspMI	CCCGGG	1 cut(s)	402
TspRI	CASTG	2 cut(s)	292, 546
XapI	RAATTY	2 cut(s)	4, 183
XceI	RCATGY	1 cut(s)	535
XmaI	CCCGGG	1 cut(s)	402
XmiI	GTMKAC	1 cut(s)	240
XmnI	GAANNNNTTC	1 cut(s)	63
Zsp2I	ATGCAT	2 cut(s)	537, 751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.