Rh2AG401300

belongs to the uridine kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0003508
Physical Location & Seq
Forward (+)
59886477 .. 59889804
3328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG401300.1

Sequence Viewer

Length: 882 bp
ATGAACATGAAGATCTTTGTCGACACAGATGCTGATGTCAGACTTGCTCGTAGAATAAGACGAGACACTGTTGAGGGGGGCAGGGATATTGACTCTGTTCTTGAGCAGTATGCCAAGTTTGTCAAGCCTGCTTTTGATGATTTTGTTCTCCCCTCAAAGAAGTACGCTGATGTGATCATTCCCCGGGGAGGCGATAACCATGTTGCTATGGATTTAATTGTACAACATATTCAGACAAAGCTTGGTCAGCATGATCTTTGCAAAATATATCCTAATGTATACGTTATACAGTCCACATTTCAGATTAGAGGCATGCATACACTAATTCGAGACCGAGAAATATCAAAGCATGATTTTGTATTTTATTCGGATTGCCTAATTCGTCTGGTTGTGGAGCATGGCCTTGGTCATTTGCCATTCACAGAGAAACAAGTAATAACTCCACCAGGATCTGTGTATACTGGGGTTGATTTCTGCAAGAAATTATGTGGAGTTTCAATTGTTCGAAGTGGTGAGAGCATGGAAAATGCATTACGTGCATGTTGCAAGGGAATAAAAATTGGGAAGATCTTGATTCATCGTGAGCGAGACAATGGCAAACAGGATATTTCAGAGCGTCATGTCCTGCTTCTAGACCCTGTACTTGCTACAGGTAACCCTGCTAACCAGGCTATTGAACTACTCATACAGAAAGGGGTTCCTGAATCGCATATAATATTCTTAAACCTTATATCTGCTCCTGAAGGAATTCATTGTGTTTACAAACGATTTCCATCCTTGAAGATCGTCACTTCGGAGATTGATGTTGCCCTCAATGAAGAATTTCGTGTCATACCAGGGTTGGGTGAATTTGGTGATCGTTACTTTGGCACGGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004845 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006109 GO:0006139 GO:0006206 GO:0006207 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010138 GO:0010556 GO:0010675 GO:0010962 GO:0016301 GO:0016310 GO:0016740 GO:0016757 GO:0016763 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019222 GO:0019438 GO:0019637 GO:0019693 GO:0019856 GO:0031323 GO:0031326 GO:0032262 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043173 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0044206 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046112 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0050789 GO:0050794 GO:0055086 GO:0060255 GO:0065007 GO:0071704 GO:0072527 GO:0072528 GO:0080090 GO:0090407 GO:1900376 GO:1901135 GO:1901137 GO:1901141 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:2000112 GO:2000762 GO:2000904 GO:2001006
KEGG Pathways
Metabolic & Signaling
ko00030 ko00040 ko00240 ko00710 ko00983 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00240 map00710 map00983 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PRK UPRTase

Protein Analysis

293

Amino Acids

33.03

Weight (kDa)

6.6

Isoelectric Point (pI)

36.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRK PF00485 1 - 68 1.8e-20 Phosphoribulokinase / Uridine kinase family
UPRTase PF14681 98 - 291 7e-66 Uracil phosphoribosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 21, 279, 458
AclWI GGATC 1 cut(s) 457
AcsI RAATTY 3 cut(s) 747, 821, 848
AcuI CTGAAG 1 cut(s) 762
AfaI GTAC 3 cut(s) 164, 222, 642
AfiI CCNNNNNNNGG 2 cut(s) 188, 842
AgsI TTSAA 3 cut(s) 498, 677, 781
AjnI CCWGG 3 cut(s) 445, 666, 835
AluBI AGCT 1 cut(s) 241
AluI AGCT 1 cut(s) 241
Alw26I GTCTC 3 cut(s) 57, 324, 582
AlwI GGATC 1 cut(s) 457
AlwNI CAGNNNCTG 2 cut(s) 32, 452
Ama87I CYCGRG 1 cut(s) 183
AoxI GGCC 1 cut(s) 400
ApoI RAATTY 3 cut(s) 747, 821, 848
Asp700I GAANNNNTTC 2 cut(s) 747, 822
AsuC2I CCSGG 2 cut(s) 184, 185
AsuHPI GGTGA 3 cut(s) 524, 857, 866
AsuII TTCGAA 1 cut(s) 505
AvaI CYCGRG 1 cut(s) 183
BccI CCATC 1 cut(s) 781
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BciT130I CCWGG 3 cut(s) 447, 668, 837
BclI TGATCA 1 cut(s) 174
BcnI CCSGG 2 cut(s) 184, 185
BcoDI GTCTC 3 cut(s) 57, 324, 582
BfaI CTAG 1 cut(s) 632
BfmI CTRYAG 1 cut(s) 648
BglII AGATCT 2 cut(s) 12, 567
Bme1390I CCNGG 5 cut(s) 184, 185, 447, 668, 837
BmeT110I CYCGRG 1 cut(s) 183
BmiI GGNNCC 1 cut(s) 699
BmrFI CCNGG 5 cut(s) 184, 185, 447, 668, 837
BmrI ACTGGG 1 cut(s) 471
BmsI GCATC 1 cut(s) 19
BmuI ACTGGG 1 cut(s) 471
Bpu14I TTCGAA 1 cut(s) 505
BpuEI CTTGAG 1 cut(s) 122
BpuMI CCSGG 2 cut(s) 184, 185
BsaAI YACGTR 1 cut(s) 536
BsaBI GATNNNNATC 1 cut(s) 772
BsaI GGTCTC 1 cut(s) 324
BsaJI CCNNGG 5 cut(s) 182, 183, 184, 403, 836
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 842
Bse1I ACTGG 1 cut(s) 466
Bse8I GATNNNNATC 1 cut(s) 772
BseBI CCWGG 3 cut(s) 447, 668, 837
BseDI CCNNGG 5 cut(s) 182, 183, 184, 403, 836
BseGI GGATG 2 cut(s) 773, 880
BseJI GATNNNNATC 1 cut(s) 772
BseLI CCNNNNNNNGG 2 cut(s) 188, 842
BseNI ACTGG 1 cut(s) 466
BshFI GGCC 1 cut(s) 402
BsiHKCI CYCGRG 1 cut(s) 183
BsiSI CCGG 1 cut(s) 184
BslI CCNNNNNNNGG 2 cut(s) 188, 842
BsmAI GTCTC 3 cut(s) 57, 324, 582
BsnI GGCC 1 cut(s) 402
Bso31I GGTCTC 1 cut(s) 324
BsoBI CYCGRG 1 cut(s) 183
Bsp119I TTCGAA 1 cut(s) 505
Bsp1407I TGTACA 1 cut(s) 220
Bsp143I GATC 7 cut(s) 12, 174, 253, 449, 567, 783, 856
BspANI GGCC 1 cut(s) 402
BspLI GGNNCC 1 cut(s) 699
BspPI GGATC 1 cut(s) 457
BspT104I TTCGAA 1 cut(s) 505
BspTNI GGTCTC 1 cut(s) 324
BsrGI TGTACA 1 cut(s) 220
BsrI ACTGG 1 cut(s) 466
BssECI CCNNGG 5 cut(s) 182, 183, 184, 403, 836
BssMI GATC 7 cut(s) 12, 174, 253, 449, 567, 783, 856
BssNAI GTATAC 2 cut(s) 280, 459
BssT1I CCWWGG 1 cut(s) 403
Bst1107I GTATAC 2 cut(s) 280, 459
Bst2UI CCWGG 3 cut(s) 447, 668, 837
Bst4CI ACNGT 2 cut(s) 70, 291
BstAPI GCANNNNNTGC 1 cut(s) 536
BstAUI TGTACA 1 cut(s) 220
BstBAI YACGTR 1 cut(s) 536
BstBI TTCGAA 1 cut(s) 505
BstC8I GCNNGC 2 cut(s) 129, 314
BstEII GGTNACC 1 cut(s) 653
BstF5I GGATG 2 cut(s) 773, 880
BstKTI GATC 7 cut(s) 15, 177, 256, 452, 570, 786, 859
BstMAI GTCTC 3 cut(s) 57, 324, 582
BstMBI GATC 7 cut(s) 12, 174, 253, 449, 567, 783, 856
BstMWI GCNNNNNNNGC 3 cut(s) 247, 536, 668
BstNI CCWGG 3 cut(s) 447, 668, 837
BstNSI RCATGY 2 cut(s) 316, 543
BstPI GGTNACC 1 cut(s) 653
BstSCI CCNGG 5 cut(s) 182, 183, 445, 666, 835
BstSFI CTRYAG 1 cut(s) 648
BstX2I RGATCY 3 cut(s) 12, 449, 567
BstYI RGATCY 3 cut(s) 12, 449, 567
BstZ17I GTATAC 2 cut(s) 280, 459
BsuRI GGCC 1 cut(s) 402
BtsCI GGATG 2 cut(s) 773, 880
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 2 cut(s) 129, 314
CaiI CAGNNNCTG 2 cut(s) 32, 452
Cfr9I CCCGGG 1 cut(s) 183
CseI GACGC 1 cut(s) 605
Csp6I GTAC 3 cut(s) 163, 221, 641
CviAII CATG 9 cut(s) 7, 200, 251, 313, 350, 398, 520, 540, 620
CviJI RGCY 4 cut(s) 127, 241, 402, 671
CviKI_1 RGCY 4 cut(s) 127, 241, 402, 671
CviQI GTAC 3 cut(s) 163, 221, 641
DpnI GATC 7 cut(s) 14, 176, 255, 451, 569, 785, 858
DpnII GATC 7 cut(s) 12, 174, 253, 449, 567, 783, 856
Eco130I CCWWGG 1 cut(s) 403
Eco31I GGTCTC 1 cut(s) 324
Eco57I CTGAAG 1 cut(s) 762
Eco88I CYCGRG 1 cut(s) 183
Eco91I GGTNACC 1 cut(s) 653
EcoO65I GGTNACC 1 cut(s) 653
EcoRI GAATTC 1 cut(s) 747
EcoRII CCWGG 3 cut(s) 445, 666, 835
EcoT14I CCWWGG 1 cut(s) 403
EcoT22I ATGCAT 2 cut(s) 318, 532
ErhI CCWWGG 1 cut(s) 403
FaeI CATG 9 cut(s) 10, 203, 254, 316, 353, 401, 523, 543, 623
FatI CATG 9 cut(s) 6, 199, 250, 312, 349, 397, 519, 539, 619
FbaI TGATCA 1 cut(s) 174
FblI GTMKAC 3 cut(s) 21, 279, 458
FokI GGATG 1 cut(s) 760
FspBI CTAG 1 cut(s) 632
HaeIII GGCC 1 cut(s) 402
HapII CCGG 1 cut(s) 184
HgaI GACGC 1 cut(s) 605
Hin1II CATG 9 cut(s) 10, 203, 254, 316, 353, 401, 523, 543, 623
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HindIII AAGCTT 1 cut(s) 239
HinfI GANTC 3 cut(s) 92, 574, 704
HpaII CCGG 1 cut(s) 184
HphI GGTGA 3 cut(s) 524, 857, 866
Hpy166II GTNNAC 5 cut(s) 22, 280, 294, 459, 760
Hpy188I TCNGA 6 cut(s) 41, 234, 303, 370, 613, 796
Hpy188III TCNNGA 7 cut(s) 101, 329, 571, 581, 632, 701, 740
Hpy8I GTNNAC 5 cut(s) 22, 280, 294, 459, 760
HpyAV CCTTC 1 cut(s) 737
HpyCH4III ACNGT 2 cut(s) 70, 291
HpyCH4IV ACGT 2 cut(s) 282, 535
HpyCH4V TGCA 6 cut(s) 261, 316, 477, 530, 539, 546
HpyF10VI GCNNNNNNNGC 3 cut(s) 247, 536, 668
HpySE526I ACGT 2 cut(s) 282, 535
Hsp92II CATG 9 cut(s) 10, 203, 254, 316, 353, 401, 523, 543, 623
Ksp22I TGATCA 1 cut(s) 174
Kzo9I GATC 7 cut(s) 12, 174, 253, 449, 567, 783, 856
LmnI GCTCC 2 cut(s) 394, 742
LweI GCATC 1 cut(s) 19
MaeI CTAG 1 cut(s) 632
MaeII ACGT 2 cut(s) 282, 535
MaeIII GTNAC 3 cut(s) 653, 787, 860
MalI GATC 7 cut(s) 14, 176, 255, 451, 569, 785, 858
MboI GATC 7 cut(s) 12, 174, 253, 449, 567, 783, 856
MboII GAAGA 4 cut(s) 22, 577, 793, 830
MfeI CAATTG 1 cut(s) 498
MflI RGATCY 3 cut(s) 12, 449, 567
MluCI AATT 9 cut(s) 216, 324, 378, 482, 498, 558, 747, 821, 848
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 5 cut(s) 67, 163, 182, 302, 821
Mph1103I ATGCAT 2 cut(s) 318, 532
MroXI GAANNNNTTC 2 cut(s) 747, 822
MseI TTAA 2 cut(s) 215, 722
MspI CCGG 1 cut(s) 184
MspR9I CCNGG 5 cut(s) 184, 185, 447, 668, 837
MunI CAATTG 1 cut(s) 498
MvaI CCWGG 3 cut(s) 447, 668, 837
MwoI GCNNNNNNNGC 3 cut(s) 247, 536, 668
NciI CCSGG 2 cut(s) 184, 185
NdeII GATC 7 cut(s) 12, 174, 253, 449, 567, 783, 856
NlaIII CATG 9 cut(s) 10, 203, 254, 316, 353, 401, 523, 543, 623
NlaIV GGNNCC 1 cut(s) 699
NmuCI GTSAC 1 cut(s) 787
NsiI ATGCAT 2 cut(s) 318, 532
NspI RCATGY 2 cut(s) 316, 543
NspV TTCGAA 1 cut(s) 505
PaeI GCATGC 1 cut(s) 316
PdmI GAANNNNTTC 2 cut(s) 747, 822
PfeI GAWTC 2 cut(s) 574, 704
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
Ppu21I YACGTR 1 cut(s) 536
Psp6I CCWGG 3 cut(s) 445, 666, 835
PspEI GGTNACC 1 cut(s) 653
PspGI CCWGG 3 cut(s) 445, 666, 835
PspN4I GGNNCC 1 cut(s) 699
PsrI GAACNNNNNNTAC 2 cut(s) 669, 701
PstNI CAGNNNCTG 2 cut(s) 32, 452
PsuI RGATCY 3 cut(s) 12, 449, 567
RsaI GTAC 3 cut(s) 164, 222, 642
RsaNI GTAC 3 cut(s) 163, 221, 641
SalI GTCGAC 1 cut(s) 20
SaqAI TTAA 2 cut(s) 215, 722
Sau3AI GATC 7 cut(s) 12, 174, 253, 449, 567, 783, 856
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 5 cut(s) 184, 185, 447, 668, 837
SetI ASST 5 cut(s) 243, 285, 538, 655, 729
SfaNI GCATC 1 cut(s) 19
SfcI CTRYAG 1 cut(s) 648
SfuI TTCGAA 1 cut(s) 505
SmaI CCCGGG 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
SphI GCATGC 1 cut(s) 316
Sse9I AATT 9 cut(s) 216, 324, 378, 482, 498, 558, 747, 821, 848
SspI AATATT 1 cut(s) 717
SspMI CTAG 1 cut(s) 632
StyD4I CCNGG 5 cut(s) 182, 183, 445, 666, 835
StyI CCWWGG 1 cut(s) 403
TaaI ACNGT 2 cut(s) 70, 291
TaiI ACGT 2 cut(s) 285, 538
TaqI TCGA 3 cut(s) 21, 328, 505
TaqII GACCGA 1 cut(s) 348
TasI AATT 9 cut(s) 216, 324, 378, 482, 498, 558, 747, 821, 848
TatI WGTACW 2 cut(s) 220, 640
TfiI GAWTC 2 cut(s) 574, 704
Tru1I TTAA 2 cut(s) 215, 722
Tru9I TTAA 2 cut(s) 215, 722
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 1 cut(s) 787
Tsp45I GTSAC 1 cut(s) 787
TspDTI ATGAA 5 cut(s) 17, 23, 566, 740, 831
TspMI CCCGGG 1 cut(s) 183
TspRI CASTG 1 cut(s) 73
XapI RAATTY 3 cut(s) 747, 821, 848
XbaI TCTAGA 1 cut(s) 631
XceI RCATGY 2 cut(s) 316, 543
XmaI CCCGGG 1 cut(s) 183
XmiI GTMKAC 3 cut(s) 21, 279, 458
XmnI GAANNNNTTC 2 cut(s) 747, 822
XspI CTAG 1 cut(s) 632
Zsp2I ATGCAT 2 cut(s) 318, 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.