Rh2AG430800

belongs to the uridine kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0003508
Physical Location & Seq
Reverse (-)
63941641 .. 63946321
4681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG430800.1

Sequence Viewer

Length: 1074 bp
ATGTTAGAATGTGTTCAAAAGTTAAAGTGCGGGCAGTCTGTCCAAGTTCCAATTTATGATTTTAAGATACATCGACGCTGTTCTGATACTTTTCGCCAGGTGAATGCTTCCGATGTCATCATCTTGGAGGGAATTCTGGTTTTCCATGACCAGCGCGTACGTAATTTGATGAACATGAAGATCTTTGTCGACACAGATGCTGATGTCAGACTTGCTCGTAGAATAAGACGAGACACTGTTGAGAGGGGCAGGGACATTGACTCTGTTCTTGAGCAGTATGCCAAGTTTGTCAAGCCTGCTTTTGATGATTTTGTTCTCCCCTCAAAGAAGTACGCTGATGTGATCATTCCCCGGGGAGGCGATAACCATGTTGCTATTGATTTAATTGTACAACATATTCGGACAAAGCTTGGTCAGCATGATCTTTGCAAAATATATCCTAATGTGTACGTTATACAGTCCACATTTCAGATTAGAGGCATGCATACACTGATTCGAGACCGAGAAATATCAAAGCATGATTTTGTATTTTATTCAGATCGCCTAATTCGTCTGGTTGTGGAGCATGGCCTTGGTCATTTGCCATTCACAGAGAAACAAGTAATAACTCCACCAGGATCTGTTTATACTGGGGTTGATTTCTGCAAGAAATTATGTGGAGTTTCAATTGTTCGAAGTGGTGAGAGCATGGAAAATGCATTGCGTGCATGTTGCAAAGGTATAAAAATTGGGAAGATCTTGATTCATCGTGATGGAGACGATGGCAAACAGCTTATATATGAGAAGCTCCCCAAGGATATTTCAGAGCGTCATGTCCTGCTTTTAGACCCTGTACTTGCTACAGGTAACTCTGCTAACCAGGCTATTGAACTACTCATACAGAAGGGGGTTCCTGAATCGCATATAATATTCTTAAACCTTATATCTGCTCCTGAGGGAATTCATTGTGTTTACAAACGATTTCCATCCTTGAAGATCGTCACTTCAGAGATTGATATTGCCCTCAATGAAGAATTTCGTGTCATACCAGGGTTGGGTGAATTTGGTGATCGTTACTTTGGCACGGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004845 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006109 GO:0006139 GO:0006206 GO:0006207 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010138 GO:0010556 GO:0010675 GO:0010962 GO:0016301 GO:0016310 GO:0016740 GO:0016757 GO:0016763 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019222 GO:0019438 GO:0019637 GO:0019693 GO:0019856 GO:0031323 GO:0031326 GO:0032262 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043173 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0044206 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046112 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0050789 GO:0050794 GO:0055086 GO:0060255 GO:0065007 GO:0071704 GO:0072527 GO:0072528 GO:0080090 GO:0090407 GO:1900376 GO:1901135 GO:1901137 GO:1901141 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:2000112 GO:2000762 GO:2000904 GO:2001006
KEGG Pathways
Metabolic & Signaling
ko00030 ko00040 ko00240 ko00710 ko00983 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00240 map00710 map00983 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PRK UPRTase

Protein Analysis

357

Amino Acids

40.61

Weight (kDa)

8.02

Isoelectric Point (pI)

35.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRK PF00485 1 - 124 3.8e-38 Phosphoribulokinase / Uridine kinase family
UPRTase PF14681 154 - 355 1.3e-74 Uracil phosphoribosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 189
AccII CGCG 1 cut(s) 156
AciI CCGC 1 cut(s) 30
AclWI GGATC 1 cut(s) 625
AcsI RAATTY 4 cut(s) 132, 939, 1013, 1040
AcuI CTGAAG 1 cut(s) 969
AfaI GTAC 5 cut(s) 159, 332, 390, 449, 834
AfiI CCNNNNNNNGG 2 cut(s) 356, 1034
AgsI TTSAA 4 cut(s) 17, 666, 869, 973
AjnI CCWGG 4 cut(s) 96, 613, 858, 1027
AluBI AGCT 3 cut(s) 409, 772, 787
AluI AGCT 3 cut(s) 409, 772, 787
Alw26I GTCTC 3 cut(s) 225, 492, 750
AlwI GGATC 1 cut(s) 625
AlwNI CAGNNNCTG 2 cut(s) 200, 620
Ama87I CYCGRG 1 cut(s) 351
AoxI GGCC 1 cut(s) 568
ApoI RAATTY 4 cut(s) 132, 939, 1013, 1040
Asp700I GAANNNNTTC 2 cut(s) 12, 1014
AspLEI GCGC 1 cut(s) 156
AsuC2I CCSGG 2 cut(s) 352, 353
AsuHPI GGTGA 4 cut(s) 112, 692, 1049, 1058
AsuII TTCGAA 1 cut(s) 673
AvaI CYCGRG 1 cut(s) 351
AxyI CCTNAGG 1 cut(s) 933
BccI CCATC 3 cut(s) 746, 755, 973
BcgI CGANNNNNNTGC 2 cut(s) 179, 213
BciT130I CCWGG 4 cut(s) 98, 615, 860, 1029
BclI TGATCA 1 cut(s) 342
BcnI CCSGG 2 cut(s) 352, 353
BcoDI GTCTC 3 cut(s) 225, 492, 750
BfmI CTRYAG 1 cut(s) 840
BglII AGATCT 2 cut(s) 180, 735
Bme1390I CCNGG 6 cut(s) 98, 352, 353, 615, 860, 1029
BmeT110I CYCGRG 1 cut(s) 351
BmiI GGNNCC 1 cut(s) 891
BmrFI CCNGG 6 cut(s) 98, 352, 353, 615, 860, 1029
BmrI ACTGGG 1 cut(s) 639
BmsI GCATC 1 cut(s) 187
BmuI ACTGGG 1 cut(s) 639
Bpu14I TTCGAA 1 cut(s) 673
BpuEI CTTGAG 1 cut(s) 290
BpuMI CCSGG 2 cut(s) 352, 353
BsaAI YACGTR 1 cut(s) 161
BsaBI GATNNNNATC 1 cut(s) 964
BsaI GGTCTC 1 cut(s) 492
BsaJI CCNNGG 6 cut(s) 350, 351, 352, 571, 792, 1028
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 1034
Bse1I ACTGG 1 cut(s) 634
Bse21I CCTNAGG 1 cut(s) 933
Bse3DI GCAATG 1 cut(s) 698
Bse8I GATNNNNATC 1 cut(s) 964
BseBI CCWGG 4 cut(s) 98, 615, 860, 1029
BseDI CCNNGG 6 cut(s) 350, 351, 352, 571, 792, 1028
BseGI GGATG 2 cut(s) 965, 1072
BseJI GATNNNNATC 1 cut(s) 964
BseLI CCNNNNNNNGG 2 cut(s) 356, 1034
BseMI GCAATG 1 cut(s) 698
BseMII CTCAG 1 cut(s) 924
BseNI ACTGG 1 cut(s) 634
Bsh1236I CGCG 1 cut(s) 156
BshFI GGCC 1 cut(s) 570
BsiHKCI CYCGRG 1 cut(s) 351
BsiSI CCGG 1 cut(s) 352
BsiWI CGTACG 1 cut(s) 157
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 2 cut(s) 356, 1034
BsmAI GTCTC 3 cut(s) 225, 492, 750
BsmBI CGTCTC 1 cut(s) 750
BsmFI GGGAC 1 cut(s) 266
BsmI GAATGC 1 cut(s) 109
BsnI GGCC 1 cut(s) 570
Bso31I GGTCTC 1 cut(s) 492
BsoBI CYCGRG 1 cut(s) 351
Bsp119I TTCGAA 1 cut(s) 673
Bsp1407I TGTACA 1 cut(s) 388
Bsp143I GATC 8 cut(s) 180, 342, 421, 538, 617, 735, 975, 1048
BspACI CCGC 1 cut(s) 30
BspANI GGCC 1 cut(s) 570
BspCNI CTCAG 1 cut(s) 925
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 891
BspPI GGATC 1 cut(s) 625
BspT104I TTCGAA 1 cut(s) 673
BspTNI GGTCTC 1 cut(s) 492
BsrDI GCAATG 1 cut(s) 698
BsrGI TGTACA 1 cut(s) 388
BsrI ACTGG 1 cut(s) 634
BssECI CCNNGG 6 cut(s) 350, 351, 352, 571, 792, 1028
BssMI GATC 8 cut(s) 180, 342, 421, 538, 617, 735, 975, 1048
BssT1I CCWWGG 2 cut(s) 571, 792
Bst2UI CCWGG 4 cut(s) 98, 615, 860, 1029
Bst4CI ACNGT 2 cut(s) 238, 459
BstAPI GCANNNNNTGC 1 cut(s) 704
BstAUI TGTACA 1 cut(s) 388
BstBAI YACGTR 1 cut(s) 161
BstBI TTCGAA 1 cut(s) 673
BstC8I GCNNGC 4 cut(s) 32, 297, 482, 705
BstDEI CTNAG 1 cut(s) 933
BstF5I GGATG 2 cut(s) 965, 1072
BstFNI CGCG 1 cut(s) 156
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 8 cut(s) 183, 345, 424, 541, 620, 738, 978, 1051
BstMAI GTCTC 3 cut(s) 225, 492, 750
BstMBI GATC 8 cut(s) 180, 342, 421, 538, 617, 735, 975, 1048
BstMWI GCNNNNNNNGC 3 cut(s) 415, 704, 860
BstNI CCWGG 4 cut(s) 98, 615, 860, 1029
BstNSI RCATGY 2 cut(s) 484, 711
BstSCI CCNGG 6 cut(s) 96, 350, 351, 613, 858, 1027
BstSFI CTRYAG 1 cut(s) 840
BstSNI TACGTA 1 cut(s) 161
BstUI CGCG 1 cut(s) 156
BstX2I RGATCY 3 cut(s) 180, 617, 735
BstYI RGATCY 3 cut(s) 180, 617, 735
Bsu36I CCTNAGG 1 cut(s) 933
BsuRI GGCC 1 cut(s) 570
BtsCI GGATG 2 cut(s) 965, 1072
BtsIMutI CAGTG 2 cut(s) 234, 488
Cac8I GCNNGC 4 cut(s) 32, 297, 482, 705
CaiI CAGNNNCTG 2 cut(s) 200, 620
CfoI GCGC 1 cut(s) 156
Cfr9I CCCGGG 1 cut(s) 351
CseI GACGC 2 cut(s) 84, 797
Csp6I GTAC 5 cut(s) 158, 331, 389, 448, 833
CviJI RGCY 6 cut(s) 295, 409, 570, 772, 787, 863
CviKI_1 RGCY 6 cut(s) 295, 409, 570, 772, 787, 863
CviQI GTAC 5 cut(s) 158, 331, 389, 448, 833
DdeI CTNAG 1 cut(s) 933
DpnI GATC 8 cut(s) 182, 344, 423, 540, 619, 737, 977, 1050
DpnII GATC 8 cut(s) 180, 342, 421, 538, 617, 735, 975, 1048
Eco105I TACGTA 1 cut(s) 161
Eco130I CCWWGG 2 cut(s) 571, 792
Eco31I GGTCTC 1 cut(s) 492
Eco57I CTGAAG 1 cut(s) 969
Eco81I CCTNAGG 1 cut(s) 933
Eco88I CYCGRG 1 cut(s) 351
EcoRI GAATTC 2 cut(s) 132, 939
EcoRII CCWGG 4 cut(s) 96, 613, 858, 1027
EcoT14I CCWWGG 2 cut(s) 571, 792
EcoT22I ATGCAT 2 cut(s) 486, 700
ErhI CCWWGG 2 cut(s) 571, 792
Esp3I CGTCTC 1 cut(s) 750
FaqI GGGAC 1 cut(s) 266
FauI CCCGC 1 cut(s) 23
FbaI TGATCA 1 cut(s) 342
FblI GTMKAC 1 cut(s) 189
FokI GGATG 1 cut(s) 952
GlaI GCGC 1 cut(s) 155
HaeIII GGCC 1 cut(s) 570
HapII CCGG 1 cut(s) 352
HgaI GACGC 2 cut(s) 84, 797
HhaI GCGC 1 cut(s) 156
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HindIII AAGCTT 1 cut(s) 407
HinfI GANTC 4 cut(s) 260, 493, 742, 896
HpaII CCGG 1 cut(s) 352
HphI GGTGA 4 cut(s) 112, 692, 1049, 1058
Hpy166II GTNNAC 4 cut(s) 190, 448, 462, 952
Hpy188I TCNGA 8 cut(s) 85, 112, 209, 402, 471, 538, 805, 988
Hpy188III TCNNGA 6 cut(s) 269, 497, 739, 749, 893, 932
Hpy8I GTNNAC 4 cut(s) 190, 448, 462, 952
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 1 cut(s) 877
HpyCH4III ACNGT 2 cut(s) 238, 459
HpyCH4IV ACGT 2 cut(s) 160, 450
HpyCH4V TGCA 6 cut(s) 429, 484, 645, 698, 707, 714
HpyF10VI GCNNNNNNNGC 3 cut(s) 415, 704, 860
HpyF3I CTNAG 1 cut(s) 933
HpySE526I ACGT 2 cut(s) 160, 450
HspAI GCGC 1 cut(s) 154
Ksp22I TGATCA 1 cut(s) 342
Kzo9I GATC 8 cut(s) 180, 342, 421, 538, 617, 735, 975, 1048
LmnI GCTCC 3 cut(s) 562, 792, 934
LweI GCATC 1 cut(s) 187
MaeII ACGT 2 cut(s) 160, 450
MaeIII GTNAC 3 cut(s) 845, 979, 1052
MalI GATC 8 cut(s) 182, 344, 423, 540, 619, 737, 977, 1050
MboI GATC 8 cut(s) 180, 342, 421, 538, 617, 735, 975, 1048
MboII GAAGA 4 cut(s) 190, 745, 985, 1022
MfeI CAATTG 1 cut(s) 666
MflI RGATCY 3 cut(s) 180, 617, 735
MlyI GAGTC 1 cut(s) 254
MnlI CCTC 7 cut(s) 121, 237, 331, 350, 470, 928, 1013
Mph1103I ATGCAT 2 cut(s) 486, 700
MroXI GAANNNNTTC 2 cut(s) 12, 1014
MseI TTAA 4 cut(s) 23, 63, 383, 914
MslI CAYNNNNRTG 1 cut(s) 750
MspI CCGG 1 cut(s) 352
MspR9I CCNGG 6 cut(s) 98, 352, 353, 615, 860, 1029
MunI CAATTG 1 cut(s) 666
Mva1269I GAATGC 1 cut(s) 109
MvaI CCWGG 4 cut(s) 98, 615, 860, 1029
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 3 cut(s) 415, 704, 860
NciI CCSGG 2 cut(s) 352, 353
NdeII GATC 8 cut(s) 180, 342, 421, 538, 617, 735, 975, 1048
NlaIV GGNNCC 1 cut(s) 891
NmuCI GTSAC 1 cut(s) 979
NsiI ATGCAT 2 cut(s) 486, 700
NspI RCATGY 2 cut(s) 484, 711
NspV TTCGAA 1 cut(s) 673
PaeI GCATGC 1 cut(s) 484
PcsI WCGNNNNNNNCGW 1 cut(s) 547
PctI GAATGC 1 cut(s) 109
PdmI GAANNNNTTC 2 cut(s) 12, 1014
PfeI GAWTC 3 cut(s) 493, 742, 896
Pfl23II CGTACG 1 cut(s) 157
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
Ppu21I YACGTR 1 cut(s) 161
Psp6I CCWGG 4 cut(s) 96, 613, 858, 1027
PspGI CCWGG 4 cut(s) 96, 613, 858, 1027
PspLI CGTACG 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 891
PsrI GAACNNNNNNTAC 2 cut(s) 861, 893
PstNI CAGNNNCTG 2 cut(s) 200, 620
PsuI RGATCY 3 cut(s) 180, 617, 735
RsaI GTAC 5 cut(s) 159, 332, 390, 449, 834
RsaNI GTAC 5 cut(s) 158, 331, 389, 448, 833
RseI CAYNNNNRTG 1 cut(s) 750
SalI GTCGAC 1 cut(s) 188
SaqAI TTAA 4 cut(s) 23, 63, 383, 914
Sau3AI GATC 8 cut(s) 180, 342, 421, 538, 617, 735, 975, 1048
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 6 cut(s) 98, 352, 353, 615, 860, 1029
SetI ASST 9 cut(s) 102, 163, 411, 453, 721, 774, 789, 847, 921
SfaNI GCATC 1 cut(s) 187
SfcI CTRYAG 1 cut(s) 840
SfuI TTCGAA 1 cut(s) 673
SmaI CCCGGG 1 cut(s) 353
SmiMI CAYNNNNRTG 1 cut(s) 750
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
SnaBI TACGTA 1 cut(s) 161
SphI GCATGC 1 cut(s) 484
SsiI CCGC 1 cut(s) 30
SspI AATATT 1 cut(s) 909
StyD4I CCNGG 6 cut(s) 96, 350, 351, 613, 858, 1027
StyI CCWWGG 2 cut(s) 571, 792
TaaI ACNGT 2 cut(s) 238, 459
TaiI ACGT 2 cut(s) 163, 453
TaqI TCGA 4 cut(s) 73, 189, 496, 673
TaqII GACCGA 1 cut(s) 516
TatI WGTACW 2 cut(s) 388, 832
TfiI GAWTC 3 cut(s) 493, 742, 896
Tru1I TTAA 4 cut(s) 23, 63, 383, 914
Tru9I TTAA 4 cut(s) 23, 63, 383, 914
TscAI CASTG 2 cut(s) 241, 495
TseFI GTSAC 1 cut(s) 979
Tsp45I GTSAC 1 cut(s) 979
TspDTI ATGAA 5 cut(s) 185, 191, 734, 932, 1023
TspMI CCCGGG 1 cut(s) 351
TspRI CASTG 2 cut(s) 241, 495
XapI RAATTY 4 cut(s) 132, 939, 1013, 1040
XceI RCATGY 2 cut(s) 484, 711
XmaI CCCGGG 1 cut(s) 351
XmiI GTMKAC 1 cut(s) 189
XmnI GAANNNNTTC 2 cut(s) 12, 1014
Zsp2I ATGCAT 2 cut(s) 486, 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.