Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004267

Physical Location & Seq

Genomic Coordinates Forward (+)

10445841 .. 10446900

Gene Structure 1060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G28060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCCCCATCGTCTTCGCCGCATCTAAGCCGTCCTTTTATCTCCTTCAGCGTCTTTCGGCACCTCCCTCGCAACCGTCCAATTATAATTGGGTCATCGGGGGAGGTCTTCTGGGTTGAATACACTCTCATTGCCGTCGCTTACATTGTTCAGACACATATAATGAGGGAATATCCGTCGGAATTTGCCTTGGCACTTTCCCACAATGTCTGCGTTTCAATCTCTTGTGCATTTGTTAGTTTATTCGTGGAGGAGAACAATCCTAGCGCATGGATTATGAGATCGAAAATTATGTTGATATGCATCGTCGCAACGGGGGTGGTGAATTCGACGAGCTATGTTGTTGAATCATGGACAGTGCGATATAAGGGGGCTGTGTTCCTAGCAATGTTCAGGCCATTATCTATCGTAACCGCTGTCGTACTAGGGGCAATATTTCTAGGCGATTCTCTCTATCTCGGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

155

Amino Acids

17.24

Weight (kDa)

8.93

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	44 - 152	5.1e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28050 AT3G28060
fragaria_vesca	FvH4_6g50360 FvH4_6g50360 FvH4_6g50360 FvH4_6g50360 FvH4_6g50360
malus_domestica	MD09G1036900.v1.1 MD17G1038300.v1.1
prunus_persica	Prupe.3G280700_v2.0.a1 Prupe.3G280700_v2.0.a1 Prupe.3G280700_v2.0.a1
pyrus_communis	pycom111g02970 pycom17g03450
rosa_chinensis	RchiOBHm_Chr2g0170681 RchiOBHm_Chr2g0170701
rosa_laevigata	RLG00000021975 RLG00000021976
rosa_multiflora	Rmu_sc0003787.1_g000008 Rmu_sc0003787.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081110 Rroxscaffold_2G00081120
rosa_rugosa	Rorug02G0550400 Rorug02G0550500
rosa_samantha	Rh2AG623400 Rh2AG623500 Rh2BG633900 Rh2BG634000 Rh2CG603100 Rh2CG603200
rosa_wichuraiana	Rw2G051630 Rw2G051640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	86
AccB1I	GGYRCC	1 cut(s)	60
AciI	CCGC	2 cut(s)	20, 414
AcsI	RAATTY	2 cut(s)	182, 325
AcuI	CTGAAG	1 cut(s)	31
AfaI	GTAC	1 cut(s)	423
AgsI	TTSAA	3 cut(s)	119, 219, 347
AluBI	AGCT	1 cut(s)	336
AluI	AGCT	1 cut(s)	336
AoxI	GGCC	2 cut(s)	3, 395
ApoI	RAATTY	2 cut(s)	182, 325
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	334
BanI	GGYRCC	1 cut(s)	60
BbsI	GAAGAC	2 cut(s)	6, 100
BccI	CCATC	1 cut(s)	16
BceAI	ACGGC	2 cut(s)	15, 119
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BfaI	CTAG	4 cut(s)	264, 383, 425, 440
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	6, 62
BmsI	GCATC	2 cut(s)	31, 312
BpiI	GAAGAC	2 cut(s)	6, 100
BsaBI	GATNNNNATC	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	189
Bse3DI	GCAATG	2 cut(s)	129, 393
Bse8I	GATNNNNATC	1 cut(s)	302
BseDI	CCNNGG	1 cut(s)	189
BseJI	GATNNNNATC	1 cut(s)	302
BseMI	GCAATG	2 cut(s)	129, 393
BseRI	GAGGAG	1 cut(s)	266
BshFI	GGCC	2 cut(s)	5, 397
BshNI	GGYRCC	1 cut(s)	60
BsnI	GGCC	2 cut(s)	5, 397
Bsp143I	GATC	1 cut(s)	281
BspACI	CCGC	2 cut(s)	20, 414
BspANI	GGCC	2 cut(s)	5, 397
BspLI	GGNNCC	2 cut(s)	6, 62
BspT107I	GGYRCC	1 cut(s)	60
BsrDI	GCAATG	2 cut(s)	129, 393
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	1 cut(s)	281
BssT1I	CCWWGG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	77, 358
BstDEI	CTNAG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	281
BstV2I	GAAGAC	2 cut(s)	6, 100
BsuRI	GGCC	2 cut(s)	5, 397
BtsIMutI	CAGTG	1 cut(s)	363
CfoI	GCGC	1 cut(s)	269
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	422
CspCI	CAANNNNNGTGG	2 cut(s)	300, 335
CviAII	CATG	2 cut(s)	270, 351
CviJI	RGCY	5 cut(s)	5, 30, 336, 374, 397
CviKI_1	RGCY	5 cut(s)	5, 30, 336, 374, 397
CviQI	GTAC	1 cut(s)	422
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	1 cut(s)	283
DpnII	GATC	1 cut(s)	281
Eco130I	CCWWGG	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	31
EcoRI	GAATTC	1 cut(s)	325
EcoT14I	CCWWGG	1 cut(s)	189
EcoT22I	ATGCAT	1 cut(s)	305
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	2 cut(s)	273, 354
FalI	AAGNNNNNCTT	2 cut(s)	19, 51
FatI	CATG	2 cut(s)	269, 350
Fnu4HI	GCNGC	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	20
FspBI	CTAG	4 cut(s)	264, 383, 425, 440
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	1 cut(s)	20
HaeIII	GGCC	2 cut(s)	5, 397
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	2 cut(s)	273, 354
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HinfI	GANTC	2 cut(s)	347, 446
HphI	GGTGA	1 cut(s)	334
Hpy188I	TCNGA	3 cut(s)	153, 181, 461
Hpy99I	CGWCG	4 cut(s)	140, 181, 311, 334
HpyAV	CCTTC	2 cut(s)	55, 456
HpyCH4III	ACNGT	2 cut(s)	77, 358
HpyCH4V	TGCA	2 cut(s)	230, 303
HpyF3I	CTNAG	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	273, 354
HspAI	GCGC	1 cut(s)	267
Kzo9I	GATC	1 cut(s)	281
LpnPI	CCDG	2 cut(s)	97, 379
LweI	GCATC	2 cut(s)	31, 312
MaeI	CTAG	4 cut(s)	264, 383, 425, 440
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	1 cut(s)	283
MboI	GATC	1 cut(s)	281
MboII	GAAGA	2 cut(s)	6, 100
MluCI	AATT	5 cut(s)	81, 87, 182, 288, 325
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	5 cut(s)	74, 78, 97, 159, 244
Mph1103I	ATGCAT	1 cut(s)	305
MspA1I	CMGCKG	1 cut(s)	416
NdeII	GATC	1 cut(s)	281
NlaIII	CATG	2 cut(s)	273, 354
NlaIV	GGNNCC	2 cut(s)	6, 62
NsiI	ATGCAT	1 cut(s)	305
PfeI	GAWTC	2 cut(s)	347, 446
PkrI	GCNGC	1 cut(s)	21
PsiI	TTATAA	1 cut(s)	86
PspN4I	GGNNCC	2 cut(s)	6, 62
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	1 cut(s)	281
Sau96I	GGNCC	1 cut(s)	4
SetI	ASST	4 cut(s)	66, 108, 338, 467
SfaNI	GCATC	2 cut(s)	31, 312
Sse9I	AATT	5 cut(s)	81, 87, 182, 288, 325
SsiI	CCGC	2 cut(s)	20, 414
SspI	AATATT	1 cut(s)	435
SspMI	CTAG	4 cut(s)	264, 383, 425, 440
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	77, 358
TaqI	TCGA	2 cut(s)	284, 329
TasI	AATT	5 cut(s)	81, 87, 182, 288, 325
TauI	GCSGC	1 cut(s)	22
TfiI	GAWTC	2 cut(s)	347, 446
TscAI	CASTG	1 cut(s)	363
TspGWI	ACGGA	1 cut(s)	165
TspRI	CASTG	1 cut(s)	363
XapI	RAATTY	2 cut(s)	182, 325
XspI	CTAG	4 cut(s)	264, 383, 425, 440
Zsp2I	ATGCAT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.