RchiOBHm_Chr2g0170701

WAT1-related protein At3g28050-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004267
Physical Location & Seq
Reverse (-)
84544839 .. 84547375
2537 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53819

Sequence Viewer

Length: 1071 bp
ATGGCAGCAGGAAGGTCTTGTTACAGAGATGTGCTTCCGTTTACAGCCATGGTGGCTATGGAGTCCACCAACGTGGGATTGAACACACTGTTCAAAGCTGCAACCATGAGAGGGATGAGCTACCATGTCTTTATTGTCTACTCTTATTCCATAGCTGCTCTTGCTCTTCTTCCAGCTCCCTTCATTTCCCACAGATCAAGGAGGCTTCCTCCTCTCAACTTTTCCATCATGAGCAAAATTCTTCTTCTTGGGCTAATTGGGAGTTCATCTCAGATAATGGGGTTTACAGGAATCAGTTACAGCTCTCCAACGCTTGCTTCTGCTATCAGCAACCTTGTGCCAGCTTTCACTTTCATTCTTGCCATTATTTTCAGGATGGAAAGTGTAGCTTTGAAAAGTAGAAGCAGTCAAGCTAAAATCTTGGGTACTATAGTTTCACTTGCAGGTGCATTTGTGGTGACTTTCTATAAGGGCCCCCGAATTTCCCTCACTAGTCAGACACAATCTCTGATGCTAAACTCAACAGCTTCAAACTCAGACTGGATCATTGGAGGCCTTCTAATAACAGCTGAGTATATATTGGTGACACTTTGGTACATTGTTCAGGCACGAATTATGAAAGAGTATCCAAATGAATTGACTGTGATCTTCTTCTACAATGTTATTGTCAGCATCGTAGCTGCAGTTGTTGGTTTGATTACAGAAAAAAATCCAAATGCTTGGAGGTTGAGACCAGATATGGCATTGGTCTCCATCCTGTGCTCAGGATTACTAAGCTCATTATTGAACAATTCTGTTCACACATGGACCTTGCGCGTGAAGGGGCCTGTGTATGTGACAATGTTCAAGCCATTGTCAATTGCCATTGCTGTTGTCATGGGCGTTACGTTCCTTGGTGATACACTTTGCCTGGGAAGCCTACTTGGAGCATCGATAATATCGATTGGGTTTTATACGGTACTATGGGGAAAAGCTAAAGAAGACGGTGAAGACTCCGGAGCTAATAGCCTGGAGTCACCATCTAGCAACAAGGCCCCTTTATTGCAAACCTATAAAACCGAGAATGTCTAG

Protein Analysis

356

Amino Acids

38.53

Weight (kDa)

9.54

Isoelectric Point (pI)

40.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 26 - 154 8.4e-09 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 434
Acc36I ACCTGC 1 cut(s) 434
AccI GTMKAC 1 cut(s) 138
AccII CGCG 1 cut(s) 816
AccIII TCCGGA 1 cut(s) 995
AclWI GGATC 1 cut(s) 551
AcsI RAATTY 2 cut(s) 237, 480
AfaI GTAC 3 cut(s) 427, 596, 960
AfiI CCNNNNNNNGG 1 cut(s) 111
AgsI TTSAA 6 cut(s) 82, 94, 394, 531, 787, 847
AhlI ACTAGT 1 cut(s) 491
AjnI CCWGG 2 cut(s) 909, 1008
AjuI GAANNNNNNNTTGG 2 cut(s) 301, 333
AleI CACNNNNGTG 1 cut(s) 71
Alw21I GWGCWC 1 cut(s) 764
Alw26I GTCTC 2 cut(s) 724, 754
AlwI GGATC 1 cut(s) 551
Aor13HI TCCGGA 1 cut(s) 995
AoxI GGCC 4 cut(s) 472, 553, 824, 1032
ApaI GGGCCC 1 cut(s) 476
ApeKI GCWGC 4 cut(s) 5, 98, 155, 680
ApoI RAATTY 2 cut(s) 237, 480
AspLEI GCGC 1 cut(s) 816
AspS9I GGNCC 5 cut(s) 472, 473, 807, 824, 1033
AsuHPI GGTGA 5 cut(s) 469, 595, 908, 998, 1008
AvaII GGWCC 1 cut(s) 807
BaeGI GKGCMC 1 cut(s) 476
BaeI ACNNNNGTAYC 2 cut(s) 417, 450
BanII GRGCYC 1 cut(s) 476
BbsI GAAGAC 2 cut(s) 987, 996
Bbv12I GWGCWC 1 cut(s) 764
BbvI GCAGC 4 cut(s) 17, 85, 142, 667
BccI CCATC 4 cut(s) 233, 370, 761, 1027
BciT130I CCWGG 2 cut(s) 911, 1010
BciVI GTATCC 1 cut(s) 636
BcoDI GTCTC 2 cut(s) 724, 754
BcuI ACTAGT 1 cut(s) 491
BfaI CTAG 3 cut(s) 492, 1023, 1069
BfmI CTRYAG 2 cut(s) 429, 681
BfuAI ACCTGC 1 cut(s) 434
BfuI GTATCC 1 cut(s) 636
BglI GCCNNNNNGGC 1 cut(s) 53
BisI GCNGC 4 cut(s) 6, 99, 156, 681
BlsI GCNGC 4 cut(s) 7, 100, 157, 682
Bme1390I CCNGG 2 cut(s) 911, 1010
Bme18I GGWCC 1 cut(s) 807
BmgT120I GGNCC 5 cut(s) 472, 473, 807, 824, 1033
BmiI GGNNCC 4 cut(s) 474, 475, 825, 1035
BmrFI CCNGG 2 cut(s) 911, 1010
BmsI GCATC 3 cut(s) 501, 681, 938
BpiI GAAGAC 2 cut(s) 987, 996
BplI GAGNNNNNCTC 4 cut(s) 193, 225, 253, 285
BpmI CTGGAG 1 cut(s) 1031
Bpu10I CCTNAGC 1 cut(s) 763
Bsa29I ATCGAT 2 cut(s) 932, 941
BsaI GGTCTC 2 cut(s) 724, 754
BsaJI CCNNGG 3 cut(s) 48, 892, 910
BsaWI WCCGGW 1 cut(s) 995
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse1I ACTGG 1 cut(s) 545
Bse3DI GCAATG 1 cut(s) 864
BseAI TCCGGA 1 cut(s) 995
BseBI CCWGG 2 cut(s) 911, 1010
BseCI ATCGAT 2 cut(s) 932, 941
BseDI CCNNGG 3 cut(s) 48, 892, 910
BseGI GGATG 3 cut(s) 120, 381, 753
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMI GCAATG 1 cut(s) 864
BseMII CTCAG 4 cut(s) 284, 549, 561, 777
BseNI ACTGG 1 cut(s) 545
BseRI GAGGAG 1 cut(s) 201
BseSI GKGCMC 1 cut(s) 476
BseXI GCAGC 4 cut(s) 17, 85, 142, 667
Bsh1236I CGCG 1 cut(s) 816
BshFI GGCC 4 cut(s) 474, 555, 826, 1034
BshVI ATCGAT 2 cut(s) 932, 941
BsiHKAI GWGCWC 1 cut(s) 764
BsiSI CCGG 1 cut(s) 996
BslI CCNNNNNNNGG 1 cut(s) 111
BsmAI GTCTC 2 cut(s) 724, 754
BsnI GGCC 4 cut(s) 474, 555, 826, 1034
Bso31I GGTCTC 2 cut(s) 724, 754
Bsp120I GGGCCC 1 cut(s) 472
Bsp1286I GDGCHC 2 cut(s) 476, 764
Bsp13I TCCGGA 1 cut(s) 995
Bsp143I GATC 3 cut(s) 194, 543, 645
Bsp19I CCATGG 1 cut(s) 48
BspANI GGCC 4 cut(s) 474, 555, 826, 1034
BspCNI CTCAG 4 cut(s) 283, 548, 562, 776
BspDI ATCGAT 2 cut(s) 932, 941
BspEI TCCGGA 1 cut(s) 995
BspFNI CGCG 1 cut(s) 816
BspHI TCATGA 1 cut(s) 228
BspLI GGNNCC 4 cut(s) 474, 475, 825, 1035
BspMAI CTGCAG 1 cut(s) 685
BspMI ACCTGC 1 cut(s) 434
BspPI GGATC 1 cut(s) 551
BspQI GCTCTTC 1 cut(s) 171
BspTNI GGTCTC 2 cut(s) 724, 754
BsrDI GCAATG 1 cut(s) 864
BsrI ACTGG 1 cut(s) 545
BssECI CCNNGG 3 cut(s) 48, 892, 910
BssMI GATC 3 cut(s) 194, 543, 645
BssT1I CCWWGG 2 cut(s) 48, 892
Bst2UI CCWGG 2 cut(s) 911, 1010
Bst4CI ACNGT 4 cut(s) 90, 643, 958, 986
Bst6I CTCTTC 1 cut(s) 171
BstC8I GCNNGC 2 cut(s) 315, 342
BstDEI CTNAG 5 cut(s) 270, 535, 570, 763, 773
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 3 cut(s) 120, 381, 753
BstFNI CGCG 1 cut(s) 816
BstHHI GCGC 1 cut(s) 816
BstKTI GATC 3 cut(s) 197, 546, 648
BstMAI GTCTC 2 cut(s) 724, 754
BstMBI GATC 3 cut(s) 194, 543, 645
BstMWI GCNNNNNNNGC 3 cut(s) 53, 161, 915
BstNI CCWGG 2 cut(s) 911, 1010
BstSCI CCNGG 2 cut(s) 909, 1008
BstSFI CTRYAG 2 cut(s) 429, 681
BstSLI GKGCMC 1 cut(s) 476
BstUI CGCG 1 cut(s) 816
BstV1I GCAGC 4 cut(s) 17, 85, 142, 667
BstV2I GAAGAC 2 cut(s) 987, 996
BstXI CCANNNNNNTGG 2 cut(s) 73, 720
Bsu15I ATCGAT 2 cut(s) 932, 941
BsuI GTATCC 1 cut(s) 636
BsuRI GGCC 4 cut(s) 474, 555, 826, 1034
BsuTUI ATCGAT 2 cut(s) 932, 941
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 3 cut(s) 120, 381, 753
BtsIMutI CAGTG 1 cut(s) 86
BveI ACCTGC 1 cut(s) 434
Cac8I GCNNGC 2 cut(s) 315, 342
CciI TCATGA 1 cut(s) 228
CfoI GCGC 1 cut(s) 816
Cfr13I GGNCC 5 cut(s) 472, 473, 807, 824, 1033
ClaI ATCGAT 2 cut(s) 932, 941
Csp6I GTAC 3 cut(s) 426, 595, 959
CviAII CATG 6 cut(s) 49, 106, 125, 229, 804, 877
CviQI GTAC 3 cut(s) 426, 595, 959
DdeI CTNAG 5 cut(s) 270, 535, 570, 763, 773
DpnI GATC 3 cut(s) 196, 545, 647
DpnII GATC 3 cut(s) 194, 543, 645
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco130I CCWWGG 2 cut(s) 48, 892
Eco147I AGGCCT 1 cut(s) 555
Eco24I GRGCYC 1 cut(s) 476
Eco31I GGTCTC 2 cut(s) 724, 754
Eco47I GGWCC 1 cut(s) 807
EcoO109I RGGNCCY 4 cut(s) 472, 473, 824, 1033
EcoRII CCWGG 2 cut(s) 909, 1008
EcoT14I CCWWGG 2 cut(s) 48, 892
EcoT38I GRGCYC 1 cut(s) 476
ErhI CCWWGG 2 cut(s) 48, 892
FaeI CATG 6 cut(s) 52, 109, 128, 232, 807, 880
FalI AAGNNNNNCTT 2 cut(s) 373, 405
FatI CATG 6 cut(s) 48, 105, 124, 228, 803, 876
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 4 cut(s) 6, 99, 156, 681
FokI GGATG 3 cut(s) 127, 388, 740
FriOI GRGCYC 1 cut(s) 476
Fsp4HI GCNGC 4 cut(s) 6, 99, 156, 681
FspBI CTAG 3 cut(s) 492, 1023, 1069
GlaI GCGC 1 cut(s) 815
GluI GCNGC 4 cut(s) 6, 99, 156, 681
GsuI CTGGAG 1 cut(s) 1031
HaeIII GGCC 4 cut(s) 474, 555, 826, 1034
HapII CCGG 1 cut(s) 996
HhaI GCGC 1 cut(s) 816
Hin1II CATG 6 cut(s) 52, 109, 128, 232, 807, 880
Hin6I GCGC 1 cut(s) 814
HinP1I GCGC 1 cut(s) 814
HinfI GANTC 4 cut(s) 62, 291, 992, 1013
HpaII CCGG 1 cut(s) 996
HphI GGTGA 5 cut(s) 469, 595, 908, 998, 1008
Hpy166II GTNNAC 5 cut(s) 42, 66, 139, 285, 799
Hpy188I TCNGA 4 cut(s) 273, 498, 510, 538
Hpy188III TCNNGA 4 cut(s) 229, 373, 765, 996
Hpy8I GTNNAC 5 cut(s) 42, 66, 139, 285, 799
HpyAV CCTTC 4 cut(s) 6, 190, 566, 814
HpyCH4III ACNGT 4 cut(s) 90, 643, 958, 986
HpyCH4IV ACGT 2 cut(s) 72, 887
HpyCH4V TGCA 5 cut(s) 101, 443, 449, 683, 1045
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 161, 915
HpyF3I CTNAG 5 cut(s) 270, 535, 570, 763, 773
HpySE526I ACGT 2 cut(s) 72, 887
Hsp92II CATG 6 cut(s) 52, 109, 128, 232, 807, 880
HspAI GCGC 1 cut(s) 814
Kpn2I TCCGGA 1 cut(s) 995
Kzo9I GATC 3 cut(s) 194, 543, 645
LguI GCTCTTC 1 cut(s) 171
LmnI GCTCC 3 cut(s) 181, 926, 998
Lsp1109I GCAGC 4 cut(s) 17, 85, 142, 667
LweI GCATC 3 cut(s) 501, 681, 938
MaeI CTAG 3 cut(s) 492, 1023, 1069
MaeII ACGT 2 cut(s) 72, 887
MaeIII GTNAC 7 cut(s) 20, 296, 457, 583, 835, 883, 1014
MalI GATC 3 cut(s) 196, 545, 647
MboI GATC 3 cut(s) 194, 543, 645
MboII GAAGA 8 cut(s) 158, 161, 233, 236, 640, 643, 992, 1001
MfeI CAATTG 1 cut(s) 858
MhlI GDGCHC 2 cut(s) 476, 764
MluCI AATT 7 cut(s) 237, 255, 480, 612, 635, 790, 858
MlyI GAGTC 3 cut(s) 71, 986, 1022
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 7 cut(s) 104, 195, 219, 222, 497, 545, 717
MroI TCCGGA 1 cut(s) 995
MslI CAYNNNNRTG 1 cut(s) 71
MspA1I CMGCKG 1 cut(s) 569
MspI CCGG 1 cut(s) 996
MspR9I CCNGG 2 cut(s) 911, 1010
MunI CAATTG 1 cut(s) 858
MvaI CCWGG 2 cut(s) 911, 1010
MvnI CGCG 1 cut(s) 816
MwoI GCNNNNNNNGC 3 cut(s) 53, 161, 915
NcoI CCATGG 1 cut(s) 48
NdeII GATC 3 cut(s) 194, 543, 645
NlaIII CATG 6 cut(s) 52, 109, 128, 232, 807, 880
NlaIV GGNNCC 4 cut(s) 474, 475, 825, 1035
NmuCI GTSAC 4 cut(s) 457, 583, 835, 1014
OliI CACNNNNGTG 1 cut(s) 71
PagI TCATGA 1 cut(s) 228
PaqCI CACCTGC 1 cut(s) 434
PceI AGGCCT 1 cut(s) 555
PciSI GCTCTTC 1 cut(s) 171
PcsI WCGNNNNNNNCGW 1 cut(s) 938
PfeI GAWTC 1 cut(s) 291
PkrI GCNGC 4 cut(s) 7, 100, 157, 682
PleI GAGTC 3 cut(s) 70, 986, 1021
PpsI GAGTC 3 cut(s) 70, 986, 1021
Psp6I CCWGG 2 cut(s) 909, 1008
PspGI CCWGG 2 cut(s) 909, 1008
PspN4I GGNNCC 4 cut(s) 474, 475, 825, 1035
PspOMI GGGCCC 1 cut(s) 472
PspPI GGNCC 5 cut(s) 472, 473, 807, 824, 1033
PstI CTGCAG 1 cut(s) 685
PvuII CAGCTG 1 cut(s) 569
RsaI GTAC 3 cut(s) 427, 596, 960
RsaNI GTAC 3 cut(s) 426, 595, 959
RseI CAYNNNNRTG 1 cut(s) 71
SapI GCTCTTC 1 cut(s) 171
SatI GCNGC 4 cut(s) 6, 99, 156, 681
Sau3AI GATC 3 cut(s) 194, 543, 645
Sau96I GGNCC 5 cut(s) 472, 473, 807, 824, 1033
SchI GAGTC 3 cut(s) 71, 986, 1022
ScrFI CCNGG 2 cut(s) 911, 1010
SduI GDGCHC 2 cut(s) 476, 764
SfaNI GCATC 3 cut(s) 501, 681, 938
SfcI CTRYAG 2 cut(s) 429, 681
SinI GGWCC 1 cut(s) 807
SmiMI CAYNNNNRTG 1 cut(s) 71
SpeI ACTAGT 1 cut(s) 491
Sse9I AATT 7 cut(s) 237, 255, 480, 612, 635, 790, 858
SseBI AGGCCT 1 cut(s) 555
SspMI CTAG 3 cut(s) 492, 1023, 1069
StuI AGGCCT 1 cut(s) 555
StyD4I CCNGG 2 cut(s) 909, 1008
StyI CCWWGG 2 cut(s) 48, 892
TaaI ACNGT 4 cut(s) 90, 643, 958, 986
TaiI ACGT 2 cut(s) 75, 890
TaqI TCGA 2 cut(s) 932, 941
TasI AATT 7 cut(s) 237, 255, 480, 612, 635, 790, 858
TfiI GAWTC 1 cut(s) 291
TscAI CASTG 1 cut(s) 93
TseFI GTSAC 4 cut(s) 457, 583, 835, 1014
TseI GCWGC 4 cut(s) 5, 98, 155, 680
Tsp45I GTSAC 4 cut(s) 457, 583, 835, 1014
TspDTI ATGAA 5 cut(s) 172, 255, 343, 632, 648
TspGWI ACGGA 1 cut(s) 27
TspRI CASTG 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 807
XapI RAATTY 2 cut(s) 237, 480
XcmI CCANNNNNNNNNTGG 1 cut(s) 55
XmiI GTMKAC 1 cut(s) 138
XspI CTAG 3 cut(s) 492, 1023, 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.