Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004267

Physical Location & Seq

Genomic Coordinates Forward (+)

4107801 .. 4110135

Gene Structure 2335 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00081120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCAGGAAGGTCTTGTTACAGAGATGTCCTGCCATTTACAGCCATGGTGACTATGGAGTCCATGGACGTGGGCTTGAACACACTGTTTAAAGCTGCAACAATGACAGGAATGAGCTACCATGTCTTTATTGCCCACACTTACTCCATAGCTGCTCTTGCTCTTGTTCCAGCTCCTTTCATCTCCCACAGATCAAGGAGGCTTCCTCCCCTCAACTTTTCCATTATGAGCAAAATTCTTCTTCTTGGGCTAATTGGGAGCTCATCTCAGATAATGGGGTATGCAGGAATCAATTACAGCTGTCCAATGCTTTATTCTGCTATCAGCAACCTTCTGCCAGCTTTCACTTTCATTCTTGCCATCATTTTCAGGTTGGAAACTGTAGCATTGAAAACCAGAAGCACTCAAGCTAAAATTGTTGGTACTATAGTTTCACTCGCAGGTGCATTTGTGGTGACTCTATATATAAGGGCCCCGAATTTCCCTCACTGGCCGAACCCAATCGCTTTTGCTAAACTCAACACCTTCAAACTCAAACTGGGTCATTGGAGGCCTTCTGATAACAGCCGAGTATATATTGGTGACACTTTGGCACAAATTATGAAAGAGTACCCAAATGAATTAACTGTGATCTTCTTCTACAATGTTGTGGTCAGCATCGTAGCTGTAGTTGTTGGTTTGATTACAGAAAAAAATCCAAATGCTTGGAGATTGAGACCTGATATGGCATTGGTATCCATCCTGTGCTCAGGACTACTAAACTCATTATTGAACAATACCGTTCACACATGGACCTTGCGCTTGAAGGGACCTGTGTATGTGACAATGTTCAAGCCATTGTCGATTGCCATTGCTGTTGTCATGGGCGTAACGTTCCTTGGTGATACACTTCATCTGGGAAGCCTACTTGGAGCAACAATTATATCAGTTGGGTTTTGCACGGTACTGTGGGGAAAAGCTAAAGAAGAGACCCGTGAAGACTCTGGAGCTGATAGCCTGGAATCACCATCTAGCAATAAGGCCCCTTTATTGCAAACCTATAAAACCGAGAATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

352

Amino Acids

38.57

Weight (kDa)

9.53

Isoelectric Point (pI)

34.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	197 - 315	7.7e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28050 AT3G28060
fragaria_vesca	FvH4_6g50360 FvH4_6g50360 FvH4_6g50360 FvH4_6g50360 FvH4_6g50360
malus_domestica	MD09G1036900.v1.1 MD17G1038300.v1.1
prunus_persica	Prupe.3G280700_v2.0.a1 Prupe.3G280700_v2.0.a1 Prupe.3G280700_v2.0.a1
pyrus_communis	pycom111g02970 pycom17g03450
rosa_chinensis	RchiOBHm_Chr2g0170681 RchiOBHm_Chr2g0170701
rosa_laevigata	RLG00000021975 RLG00000021976
rosa_multiflora	Rmu_sc0003787.1_g000008 Rmu_sc0003787.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081110 Rroxscaffold_2G00081120
rosa_rugosa	Rorug02G0550400 Rorug02G0550500
rosa_samantha	Rh2AG623400 Rh2AG623500 Rh2BG633900 Rh2BG634000 Rh2CG603100 Rh2CG603200
rosa_wichuraiana	Rw2G051630 Rw2G051640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	431
AasI	GACNNNNNNGTC	1 cut(s)	58
Acc36I	ACCTGC	1 cut(s)	431
AclI	AACGTT	1 cut(s)	872
AcoI	YGGCCR	1 cut(s)	491
AcsI	RAATTY	2 cut(s)	234, 478
AfaI	GTAC	3 cut(s)	424, 611, 945
AgsI	TTSAA	6 cut(s)	79, 391, 529, 772, 805, 832
AjiI	CACGTC	1 cut(s)	70
AjnI	CCWGG	1 cut(s)	996
AjuI	GAANNNNNNNTTGG	2 cut(s)	298, 330
Alw21I	GWGCWC	2 cut(s)	263, 749
Alw26I	GTCTC	2 cut(s)	709, 962
AoxI	GGCC	4 cut(s)	471, 491, 551, 1020
ApaI	GGGCCC	1 cut(s)	475
ApeKI	GCWGC	2 cut(s)	95, 152
ApoI	RAATTY	2 cut(s)	234, 478
AspLEI	GCGC	1 cut(s)	801
AspS9I	GGNCC	5 cut(s)	471, 472, 792, 809, 1021
AsuHPI	GGTGA	5 cut(s)	61, 466, 593, 893, 996
AvaII	GGWCC	2 cut(s)	792, 809
BaeGI	GKGCMC	1 cut(s)	475
BaeI	ACNNNNGTAYC	2 cut(s)	414, 447
BanII	GRGCYC	2 cut(s)	263, 475
BbsI	GAAGAC	1 cut(s)	984
Bbv12I	GWGCWC	2 cut(s)	263, 749
BbvI	GCAGC	2 cut(s)	82, 139
BccI	CCATC	3 cut(s)	368, 746, 1015
BciT130I	CCWGG	1 cut(s)	998
BciVI	GTATCC	1 cut(s)	745
BcoDI	GTCTC	2 cut(s)	709, 962
BfaI	CTAG	2 cut(s)	1011, 1057
BfmI	CTRYAG	3 cut(s)	381, 426, 666
BfuAI	ACCTGC	1 cut(s)	431
BfuI	GTATCC	1 cut(s)	745
BisI	GCNGC	2 cut(s)	96, 153
BlsI	GCNGC	2 cut(s)	97, 154
Bme1390I	CCNGG	1 cut(s)	998
Bme18I	GGWCC	2 cut(s)	792, 809
BmgBI	CACGTC	1 cut(s)	70
BmgT120I	GGNCC	5 cut(s)	471, 472, 792, 809, 1021
BmiI	GGNNCC	4 cut(s)	473, 474, 810, 1023
BmrFI	CCNGG	1 cut(s)	998
BmrI	ACTGGG	1 cut(s)	548
BmsI	GCATC	1 cut(s)	666
BmuI	ACTGGG	1 cut(s)	548
BpiI	GAAGAC	1 cut(s)	984
BplI	GAGNNNNNCTC	4 cut(s)	190, 222, 250, 282
BpmI	CTGGAG	1 cut(s)	1005
Bpu10I	CCTNAGC	1 cut(s)	748
BpuEI	CTTGAG	1 cut(s)	390
BsaI	GGTCTC	2 cut(s)	709, 962
BsaJI	CCNNGG	3 cut(s)	45, 63, 877
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bse1I	ACTGG	2 cut(s)	494, 543
Bse3DI	GCAATG	1 cut(s)	849
BseBI	CCWGG	1 cut(s)	998
BseDI	CCNNGG	3 cut(s)	45, 63, 877
BseGI	GGATG	1 cut(s)	738
BseMI	GCAATG	1 cut(s)	849
BseMII	CTCAG	2 cut(s)	281, 762
BseNI	ACTGG	2 cut(s)	494, 543
BseSI	GKGCMC	1 cut(s)	475
BseXI	GCAGC	2 cut(s)	82, 139
BshFI	GGCC	4 cut(s)	473, 493, 553, 1022
BsiHKAI	GWGCWC	2 cut(s)	263, 749
BslFI	GGGAC	1 cut(s)	822
BsmAI	GTCTC	2 cut(s)	709, 962
BsmFI	GGGAC	1 cut(s)	822
BsnI	GGCC	4 cut(s)	473, 493, 553, 1022
Bso31I	GGTCTC	2 cut(s)	709, 962
Bsp120I	GGGCCC	1 cut(s)	471
Bsp1286I	GDGCHC	3 cut(s)	263, 475, 749
Bsp143I	GATC	2 cut(s)	191, 630
Bsp19I	CCATGG	2 cut(s)	45, 63
BspANI	GGCC	4 cut(s)	473, 493, 553, 1022
BspCNI	CTCAG	2 cut(s)	280, 761
BspLI	GGNNCC	4 cut(s)	473, 474, 810, 1023
BspMI	ACCTGC	1 cut(s)	431
BspTNI	GGTCTC	2 cut(s)	709, 962
BsrDI	GCAATG	1 cut(s)	849
BsrI	ACTGG	2 cut(s)	494, 543
BssECI	CCNNGG	3 cut(s)	45, 63, 877
BssMI	GATC	2 cut(s)	191, 630
BssT1I	CCWWGG	3 cut(s)	45, 63, 877
Bst2UI	CCWGG	1 cut(s)	998
Bst4CI	ACNGT	6 cut(s)	87, 382, 628, 781, 943, 948
Bst6I	CTCTTC	1 cut(s)	960
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	2 cut(s)	267, 748
BstDSI	CCRYGG	2 cut(s)	45, 63
BstF5I	GGATG	1 cut(s)	738
BstHHI	GCGC	1 cut(s)	801
BstKTI	GATC	2 cut(s)	194, 633
BstMAI	GTCTC	2 cut(s)	709, 962
BstMBI	GATC	2 cut(s)	191, 630
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	1 cut(s)	998
BstSCI	CCNGG	1 cut(s)	996
BstSFI	CTRYAG	3 cut(s)	381, 426, 666
BstSLI	GKGCMC	1 cut(s)	475
BstV1I	GCAGC	2 cut(s)	82, 139
BstV2I	GAAGAC	1 cut(s)	984
BstXI	CCANNNNNNTGG	2 cut(s)	70, 705
BsuI	GTATCC	1 cut(s)	745
BsuRI	GGCC	4 cut(s)	473, 493, 553, 1022
BtgI	CCRYGG	2 cut(s)	45, 63
BtrI	CACGTC	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	738
BtsIMutI	CAGTG	2 cut(s)	83, 487
BveI	ACCTGC	1 cut(s)	431
Cac8I	GCNNGC	1 cut(s)	339
CfoI	GCGC	1 cut(s)	801
Cfr13I	GGNCC	5 cut(s)	471, 472, 792, 809, 1021
Csp6I	GTAC	3 cut(s)	423, 610, 944
CviAII	CATG	5 cut(s)	46, 64, 122, 789, 862
CviQI	GTAC	3 cut(s)	423, 610, 944
DdeI	CTNAG	2 cut(s)	267, 748
DpnI	GATC	2 cut(s)	193, 632
DpnII	GATC	2 cut(s)	191, 630
DraI	TTTAAA	1 cut(s)	91
DrdI	GACNNNNNNGTC	1 cut(s)	58
DseDI	GACNNNNNNGTC	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	491
Eam1104I	CTCTTC	1 cut(s)	960
EarI	CTCTTC	1 cut(s)	960
Ecl136II	GAGCTC	1 cut(s)	261
Eco130I	CCWWGG	3 cut(s)	45, 63, 877
Eco147I	AGGCCT	1 cut(s)	553
Eco24I	GRGCYC	2 cut(s)	263, 475
Eco31I	GGTCTC	2 cut(s)	709, 962
Eco47I	GGWCC	2 cut(s)	792, 809
Eco53kI	GAGCTC	1 cut(s)	261
EcoICRI	GAGCTC	1 cut(s)	261
EcoO109I	RGGNCCY	4 cut(s)	471, 472, 809, 1021
EcoRII	CCWGG	1 cut(s)	996
EcoT14I	CCWWGG	3 cut(s)	45, 63, 877
EcoT38I	GRGCYC	2 cut(s)	263, 475
ErhI	CCWWGG	3 cut(s)	45, 63, 877
FaeI	CATG	5 cut(s)	49, 67, 125, 792, 865
FaqI	GGGAC	1 cut(s)	822
FatI	CATG	5 cut(s)	45, 63, 121, 788, 861
Fnu4HI	GCNGC	2 cut(s)	96, 153
FokI	GGATG	1 cut(s)	725
FriOI	GRGCYC	2 cut(s)	263, 475
Fsp4HI	GCNGC	2 cut(s)	96, 153
FspBI	CTAG	2 cut(s)	1011, 1057
GlaI	GCGC	1 cut(s)	800
GluI	GCNGC	2 cut(s)	96, 153
GsuI	CTGGAG	1 cut(s)	1005
HaeIII	GGCC	4 cut(s)	473, 493, 553, 1022
HhaI	GCGC	1 cut(s)	801
Hin1II	CATG	5 cut(s)	49, 67, 125, 792, 865
Hin6I	GCGC	1 cut(s)	799
HinP1I	GCGC	1 cut(s)	799
HinfI	GANTC	5 cut(s)	59, 288, 457, 980, 1001
HphI	GGTGA	5 cut(s)	61, 466, 593, 893, 996
Hpy166II	GTNNAC	1 cut(s)	784
Hpy188I	TCNGA	2 cut(s)	270, 559
Hpy188III	TCNNGA	2 cut(s)	750, 984
Hpy8I	GTNNAC	1 cut(s)	784
HpyAV	CCTTC	5 cut(s)	3, 341, 535, 564, 799
HpyCH4III	ACNGT	6 cut(s)	87, 382, 628, 781, 943, 948
HpyCH4IV	ACGT	2 cut(s)	69, 872
HpyCH4V	TGCA	5 cut(s)	98, 284, 446, 939, 1033
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	2 cut(s)	267, 748
HpySE526I	ACGT	2 cut(s)	69, 872
Hsp92II	CATG	5 cut(s)	49, 67, 125, 792, 865
HspAI	GCGC	1 cut(s)	799
Kzo9I	GATC	2 cut(s)	191, 630
LmnI	GCTCC	4 cut(s)	178, 258, 911, 986
Lsp1109I	GCAGC	2 cut(s)	82, 139
LweI	GCATC	1 cut(s)	666
MaeI	CTAG	2 cut(s)	1011, 1057
MaeII	ACGT	2 cut(s)	69, 872
MaeIII	GTNAC	6 cut(s)	17, 49, 454, 581, 820, 868
MalI	GATC	2 cut(s)	193, 632
MboI	GATC	2 cut(s)	191, 630
MboII	GAAGA	6 cut(s)	230, 233, 625, 628, 977, 989
MhlI	GDGCHC	3 cut(s)	263, 475, 749
MluCI	AATT	8 cut(s)	234, 252, 292, 414, 478, 597, 620, 918
MlyI	GAGTC	3 cut(s)	68, 451, 974
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	5 cut(s)	192, 216, 221, 495, 543
MseI	TTAA	2 cut(s)	90, 623
MslI	CAYNNNNRTG	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	300
MspR9I	CCNGG	1 cut(s)	998
MvaI	CCWGG	1 cut(s)	998
MwoI	GCNNNNNNNGC	1 cut(s)	158
NcoI	CCATGG	2 cut(s)	45, 63
NdeII	GATC	2 cut(s)	191, 630
NlaIII	CATG	5 cut(s)	49, 67, 125, 792, 865
NlaIV	GGNNCC	4 cut(s)	473, 474, 810, 1023
NmeAIII	GCCGAG	1 cut(s)	593
NmuCI	GTSAC	4 cut(s)	49, 454, 581, 820
PaqCI	CACCTGC	1 cut(s)	431
PceI	AGGCCT	1 cut(s)	553
PfeI	GAWTC	2 cut(s)	288, 1001
PkrI	GCNGC	2 cut(s)	97, 154
PleI	GAGTC	3 cut(s)	67, 451, 974
PpsI	GAGTC	3 cut(s)	67, 451, 974
PpuMI	RGGWCCY	1 cut(s)	809
Psp124BI	GAGCTC	1 cut(s)	263
Psp1406I	AACGTT	1 cut(s)	872
Psp5II	RGGWCCY	1 cut(s)	809
Psp6I	CCWGG	1 cut(s)	996
PspGI	CCWGG	1 cut(s)	996
PspN4I	GGNNCC	4 cut(s)	473, 474, 810, 1023
PspOMI	GGGCCC	1 cut(s)	471
PspPI	GGNCC	5 cut(s)	471, 472, 792, 809, 1021
PspPPI	RGGWCCY	1 cut(s)	809
PvuII	CAGCTG	1 cut(s)	300
RsaI	GTAC	3 cut(s)	424, 611, 945
RsaNI	GTAC	3 cut(s)	423, 610, 944
RseI	CAYNNNNRTG	1 cut(s)	68
SacI	GAGCTC	1 cut(s)	263
SaqAI	TTAA	2 cut(s)	90, 623
SatI	GCNGC	2 cut(s)	96, 153
Sau3AI	GATC	2 cut(s)	191, 630
Sau96I	GGNCC	5 cut(s)	471, 472, 792, 809, 1021
SchI	GAGTC	3 cut(s)	68, 451, 974
ScrFI	CCNGG	1 cut(s)	998
SduI	GDGCHC	3 cut(s)	263, 475, 749
SfaNI	GCATC	1 cut(s)	666
SfcI	CTRYAG	3 cut(s)	381, 426, 666
SinI	GGWCC	2 cut(s)	792, 809
SmiMI	CAYNNNNRTG	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
Sse9I	AATT	8 cut(s)	234, 252, 292, 414, 478, 597, 620, 918
SseBI	AGGCCT	1 cut(s)	553
SspMI	CTAG	2 cut(s)	1011, 1057
SstI	GAGCTC	1 cut(s)	263
StuI	AGGCCT	1 cut(s)	553
StyD4I	CCNGG	1 cut(s)	996
StyI	CCWWGG	3 cut(s)	45, 63, 877
TaaI	ACNGT	6 cut(s)	87, 382, 628, 781, 943, 948
TaiI	ACGT	2 cut(s)	72, 875
TaqI	TCGA	1 cut(s)	842
TasI	AATT	8 cut(s)	234, 252, 292, 414, 478, 597, 620, 918
TfiI	GAWTC	2 cut(s)	288, 1001
Tru1I	TTAA	2 cut(s)	90, 623
Tru9I	TTAA	2 cut(s)	90, 623
TscAI	CASTG	2 cut(s)	90, 494
TseFI	GTSAC	4 cut(s)	49, 454, 581, 820
TseI	GCWGC	2 cut(s)	95, 152
Tsp45I	GTSAC	4 cut(s)	49, 454, 581, 820
TspDTI	ATGAA	5 cut(s)	169, 340, 617, 633, 881
TspRI	CASTG	2 cut(s)	90, 494
VpaK11BI	GGWCC	2 cut(s)	792, 809
XapI	RAATTY	2 cut(s)	234, 478
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XspI	CTAG	2 cut(s)	1011, 1057

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.