Rorug02G0550500

WAT1-related protein At3g28050-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
67777395 .. 67783031
5637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0550500.1

Sequence Viewer

Length: 1221 bp
ATGAAGGGTTGCAATGTTACTGTCATCGCAGTTCTCCTTGTTCTTCTTTTAGTTCCAGCTGCCATGTCTGCTAGGCACATAGCTCGCCCTCACTCACGTCATGTACGTAATCTGCGTTCTTCATCTGCGGTACCAACAAGTACTACTATGACCGCAACAAAAGATCATCGGAGTACTCATGTGGCTGCAGGAAAATTCCTCAGAAAGGGGCCGGACACACTCCAAGTGGCAGGCTCTTCGCTACCGGATTGTTCACACGCCTGCGGATCTTGCACGCCCTGTAGACTGGTGATGGTGAGCTTCGTTTGCGCGTCGATAGAGGAAGCTGAGACTTGCCCCATGGCTTACAAGTGCATGTGTAATAACAAGTCTTACCCCGTTCCGGTGTTCTTCATGCTTTTAGCTTCCAAATGTGTGATTGCAAAACTTGAGTGGAAACCTTTATATTGCTACCTCGTGGACGTTATGCGGCAGTTTATAAATACCGAAAGGCAAGTTCAAATATCAAATGTAGTTAATGCTATGGTTGGACCACGATCATGGACAGGACTGTTTAGCCGCTCAAGCAACAAACGTAATGGGAAGTATGTTGACTACCCTTTGAGTCCTATGCAGGAGCAGAGACTTTTGGGGCTTCAAGAACGACTACAAGTACCTTTTGACGAGACTCGCCCTGATCATCAAGAAGCCTTGAAAGCACTCTGGTATGCTGCCTTTCCAGATGTTGCTATCAGTGGTTTGATCTCTGAGCAATGGAAAGAGATGGGGTGGCAAGGTCCTAACCCATCTACTGACTTTAGGAGTTGCGGTGTTATTGCCCTTGAGAACTTGCTTTTCTTCGCCAGAACTTATCCTGCATCTTTCCGGAGATTATTGTTCAAGCAAGGTGGGAGACGAGCAACTTGGGAATACCCATTTGCTGTTGCTGGCATAAACATATCATTTATGTTGATTCAATTGCTGGATCTTTGGTCAGCAAGACCAAGGTGTCTTCCCGGGATAAATTTCGTGAAGTTATTAGGAGAAGATGAAGCTGCTTTTGATGTTCTGTTCTGTATAGCTTTTGAAATGGTGGATGCTCAATGGCTTGCTATGAATGCATCCTACATGCAGTTTAATGATGTTCTGCAAGCAACGCGGACGCAGTTGGAAAGAGAACTATCTTTAGAAGATACTCAGAGAATACAAGATTTACCAGCTTATAATCTGTTGTACCAGTAG

Protein Analysis

406

Amino Acids

45.79

Weight (kDa)

8.71

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 77 - 126 2.3e-14 Epidermal patterning factor proteins
ELMO_CED12 PF04727 212 - 376 5.3e-51 ELMO/CED-12 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 479, 1203
AasI GACNNNNNNGTC 1 cut(s) 987
Acc65I GGTACC 1 cut(s) 130
AccB1I GGYRCC 1 cut(s) 130
AccBSI CCGCTC 1 cut(s) 561
AccI GTMKAC 1 cut(s) 283
AccII CGCG 2 cut(s) 311, 1138
AccIII TCCGGA 1 cut(s) 864
AciI CCGC 7 cut(s) 128, 153, 264, 469, 559, 807, 1138
AclWI GGATC 2 cut(s) 274, 972
AcsI RAATTY 2 cut(s) 194, 1003
AfaI GTAC 6 cut(s) 105, 132, 142, 175, 654, 1214
AfiI CCNNNNNNNGG 2 cut(s) 205, 382
AgsI TTSAA 6 cut(s) 500, 638, 694, 880, 956, 1067
AjiI CACGTC 1 cut(s) 98
AluBI AGCT 8 cut(s) 59, 83, 300, 326, 404, 1034, 1061, 1199
AluI AGCT 8 cut(s) 59, 83, 300, 326, 404, 1034, 1061, 1199
Alw26I GTCTC 4 cut(s) 323, 616, 659, 886
AlwI GGATC 2 cut(s) 274, 972
Ama87I CYCGRG 1 cut(s) 995
Aor13HI TCCGGA 1 cut(s) 864
AoxI GGCC 1 cut(s) 209
ApeKI GCWGC 4 cut(s) 59, 185, 710, 1034
ApoI RAATTY 2 cut(s) 194, 1003
Asp718I GGTACC 1 cut(s) 130
AspLEI GCGC 1 cut(s) 311
AspS9I GGNCC 3 cut(s) 209, 530, 776
AsuC2I CCSGG 2 cut(s) 996, 997
AsuHPI GGTGA 2 cut(s) 301, 307
AvaI CYCGRG 1 cut(s) 995
AvaII GGWCC 2 cut(s) 530, 776
BanI GGYRCC 1 cut(s) 130
BauI CACGAG 1 cut(s) 455
BbsI GAAGAC 1 cut(s) 983
BbvI GCAGC 4 cut(s) 46, 172, 697, 1021
BccI CCATC 3 cut(s) 286, 757, 793
BcgI CGANNNNNNTGC 4 cut(s) 65, 99, 219, 253
BclI TGATCA 1 cut(s) 676
BcnI CCSGG 2 cut(s) 996, 997
BcoDI GTCTC 4 cut(s) 323, 616, 659, 886
BfaI CTAG 1 cut(s) 72
BfmI CTRYAG 2 cut(s) 186, 280
BisI GCNGC 6 cut(s) 60, 186, 470, 559, 711, 1035
BlsI GCNGC 6 cut(s) 61, 187, 471, 560, 712, 1036
BmcAI AGTACT 2 cut(s) 142, 175
Bme1390I CCNGG 2 cut(s) 996, 997
Bme18I GGWCC 2 cut(s) 530, 776
BmeT110I CYCGRG 1 cut(s) 995
BmgBI CACGTC 1 cut(s) 98
BmgT120I GGNCC 3 cut(s) 209, 530, 776
BmiI GGNNCC 2 cut(s) 132, 210
BmrFI CCNGG 2 cut(s) 996, 997
BmsI GCATC 3 cut(s) 866, 1066, 1109
BpiI GAAGAC 1 cut(s) 983
BpuEI CTTGAG 3 cut(s) 449, 547, 842
BpuMI CCSGG 2 cut(s) 996, 997
BsaAI YACGTR 1 cut(s) 107
BsaJI CCNNGG 3 cut(s) 339, 983, 995
BsaWI WCCGGW 3 cut(s) 244, 382, 864
BsaXI ACNNNNNCTCC 2 cut(s) 793, 823
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 382
Bse1I ACTGG 2 cut(s) 291, 1216
Bse3DI GCAATG 2 cut(s) 19, 758
BseAI TCCGGA 1 cut(s) 864
BseDI CCNNGG 3 cut(s) 339, 983, 995
BseGI GGATG 2 cut(s) 1081, 1100
BseLI CCNNNNNNNGG 2 cut(s) 205, 382
BseMI GCAATG 2 cut(s) 19, 758
BseMII CTCAG 4 cut(s) 214, 318, 738, 1190
BseNI ACTGG 2 cut(s) 291, 1216
BseXI GCAGC 4 cut(s) 46, 172, 697, 1021
Bsh1236I CGCG 2 cut(s) 311, 1138
BshFI GGCC 1 cut(s) 211
BshNI GGYRCC 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 995
BsiSI CCGG 5 cut(s) 212, 245, 383, 865, 996
BslI CCNNNNNNNGG 2 cut(s) 205, 382
BsmAI GTCTC 4 cut(s) 323, 616, 659, 886
BsmBI CGTCTC 1 cut(s) 886
BsmI GAATGC 1 cut(s) 1102
BsnI GGCC 1 cut(s) 211
BsoBI CYCGRG 1 cut(s) 995
Bsp13I TCCGGA 1 cut(s) 864
Bsp143I GATC 6 cut(s) 163, 266, 536, 676, 741, 964
Bsp19I CCATGG 1 cut(s) 339
BspACI CCGC 7 cut(s) 128, 153, 264, 469, 559, 807, 1138
BspANI GGCC 1 cut(s) 211
BspCNI CTCAG 4 cut(s) 213, 319, 739, 1189
BspEI TCCGGA 1 cut(s) 864
BspFNI CGCG 2 cut(s) 311, 1138
BspLI GGNNCC 2 cut(s) 132, 210
BspMAI CTGCAG 1 cut(s) 190
BspPI GGATC 2 cut(s) 274, 972
BspQI GCTCTTC 1 cut(s) 241
BspT107I GGYRCC 1 cut(s) 130
BsrBI CCGCTC 1 cut(s) 561
BsrDI GCAATG 2 cut(s) 19, 758
BsrI ACTGG 2 cut(s) 291, 1216
BssECI CCNNGG 3 cut(s) 339, 983, 995
BssMI GATC 6 cut(s) 163, 266, 536, 676, 741, 964
BssSI CACGAG 1 cut(s) 455
BssT1I CCWWGG 2 cut(s) 339, 983
Bst2BI CACGAG 1 cut(s) 455
Bst4CI ACNGT 2 cut(s) 22, 552
Bst6I CTCTTC 1 cut(s) 241
BstBAI YACGTR 1 cut(s) 107
BstC8I GCNNGC 7 cut(s) 85, 232, 262, 275, 928, 1089, 1131
BstDEI CTNAG 4 cut(s) 200, 327, 747, 1176
BstDSI CCRYGG 1 cut(s) 339
BstENI CCTNNNNNAGG 1 cut(s) 203
BstF5I GGATG 2 cut(s) 1081, 1100
BstFNI CGCG 2 cut(s) 311, 1138
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 6 cut(s) 166, 269, 539, 679, 744, 967
BstMAI GTCTC 4 cut(s) 323, 616, 659, 886
BstMBI GATC 6 cut(s) 163, 266, 536, 676, 741, 964
BstMWI GCNNNNNNNGC 7 cut(s) 68, 270, 306, 564, 695, 1097, 1135
BstNSI RCATGY 2 cut(s) 358, 1111
BstSCI CCNGG 2 cut(s) 994, 995
BstSFI CTRYAG 2 cut(s) 186, 280
BstSNI TACGTA 1 cut(s) 107
BstUI CGCG 2 cut(s) 311, 1138
BstV1I GCAGC 4 cut(s) 46, 172, 697, 1021
BstV2I GAAGAC 1 cut(s) 983
BstX2I RGATCY 2 cut(s) 266, 964
BstXI CCANNNNNNTGG 1 cut(s) 540
BstYI RGATCY 2 cut(s) 266, 964
BsuRI GGCC 1 cut(s) 211
BtgI CCRYGG 1 cut(s) 339
BtgZI GCGATG 1 cut(s) 10
BtrI CACGTC 1 cut(s) 98
BtsCI GGATG 2 cut(s) 1081, 1100
BtsIMutI CAGTG 1 cut(s) 739
Cac8I GCNNGC 7 cut(s) 85, 232, 262, 275, 928, 1089, 1131
CfoI GCGC 1 cut(s) 311
Cfr13I GGNCC 3 cut(s) 209, 530, 776
Cfr9I CCCGGG 1 cut(s) 995
CseI GACGC 2 cut(s) 300, 1150
Csp6I GTAC 6 cut(s) 104, 131, 141, 174, 653, 1213
CspCI CAANNNNNGTGG 2 cut(s) 868, 903
CviAII CATG 8 cut(s) 64, 101, 179, 340, 355, 394, 540, 1108
CviQI GTAC 6 cut(s) 104, 131, 141, 174, 653, 1213
DdeI CTNAG 4 cut(s) 200, 327, 747, 1176
DpnI GATC 6 cut(s) 165, 268, 538, 678, 743, 966
DpnII GATC 6 cut(s) 163, 266, 536, 676, 741, 964
DrdI GACNNNNNNGTC 1 cut(s) 987
DseDI GACNNNNNNGTC 1 cut(s) 987
Eam1104I CTCTTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 241
Eco105I TACGTA 1 cut(s) 107
Eco130I CCWWGG 2 cut(s) 339, 983
Eco47I GGWCC 2 cut(s) 530, 776
Eco88I CYCGRG 1 cut(s) 995
EcoNI CCTNNNNNAGG 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 776
EcoT14I CCWWGG 2 cut(s) 339, 983
EcoT22I ATGCAT 1 cut(s) 1102
ErhI CCWWGG 2 cut(s) 339, 983
Esp3I CGTCTC 1 cut(s) 886
FaeI CATG 8 cut(s) 67, 104, 182, 343, 358, 397, 543, 1111
FatI CATG 8 cut(s) 63, 100, 178, 339, 354, 393, 539, 1107
FbaI TGATCA 1 cut(s) 676
FblI GTMKAC 1 cut(s) 283
Fnu4HI GCNGC 6 cut(s) 60, 186, 470, 559, 711, 1035
FokI GGATG 2 cut(s) 1087, 1088
Fsp4HI GCNGC 6 cut(s) 60, 186, 470, 559, 711, 1035
FspBI CTAG 1 cut(s) 72
GlaI GCGC 1 cut(s) 310
GluI GCNGC 6 cut(s) 60, 186, 470, 559, 711, 1035
HaeIII GGCC 1 cut(s) 211
HapII CCGG 5 cut(s) 212, 245, 383, 865, 996
HgaI GACGC 2 cut(s) 300, 1150
HhaI GCGC 1 cut(s) 311
Hin1II CATG 8 cut(s) 67, 104, 182, 343, 358, 397, 543, 1111
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HincII GTYRAC 1 cut(s) 592
HindII GTYRAC 1 cut(s) 592
HinfI GANTC 3 cut(s) 604, 667, 952
HpaII CCGG 5 cut(s) 212, 245, 383, 865, 996
HphI GGTGA 2 cut(s) 301, 307
Hpy166II GTNNAC 4 cut(s) 254, 284, 460, 592
Hpy188I TCNGA 4 cut(s) 171, 203, 748, 1179
Hpy188III TCNNGA 5 cut(s) 638, 683, 719, 865, 1009
Hpy8I GTNNAC 4 cut(s) 254, 284, 460, 592
Hpy99I CGWCG 1 cut(s) 316
HpyCH4III ACNGT 2 cut(s) 22, 552
HpyCH4IV ACGT 4 cut(s) 97, 106, 462, 574
HpyF10VI GCNNNNNNNGC 7 cut(s) 68, 270, 306, 564, 695, 1097, 1135
HpyF3I CTNAG 4 cut(s) 200, 327, 747, 1176
HpySE526I ACGT 4 cut(s) 97, 106, 462, 574
Hsp92II CATG 8 cut(s) 67, 104, 182, 343, 358, 397, 543, 1111
HspAI GCGC 1 cut(s) 309
Kpn2I TCCGGA 1 cut(s) 864
KpnI GGTACC 1 cut(s) 134
Ksp22I TGATCA 1 cut(s) 676
Kzo9I GATC 6 cut(s) 163, 266, 536, 676, 741, 964
LguI GCTCTTC 1 cut(s) 241
LmnI GCTCC 1 cut(s) 616
Lsp1109I GCAGC 4 cut(s) 46, 172, 697, 1021
LweI GCATC 3 cut(s) 866, 1066, 1109
MaeI CTAG 1 cut(s) 72
MaeII ACGT 4 cut(s) 97, 106, 462, 574
MaeIII GTNAC 1 cut(s) 16
MalI GATC 6 cut(s) 165, 268, 538, 678, 743, 966
MbiI CCGCTC 1 cut(s) 561
MboI GATC 6 cut(s) 163, 266, 536, 676, 741, 964
MboII GAAGA 8 cut(s) 35, 111, 228, 382, 829, 983, 1037, 1181
MfeI CAATTG 1 cut(s) 956
MflI RGATCY 2 cut(s) 266, 964
MluCI AATT 3 cut(s) 194, 956, 1003
MlyI GAGTC 2 cut(s) 613, 661
MmeI TCCRAC 2 cut(s) 508, 1128
MnlI CCTC 4 cut(s) 99, 209, 313, 464
Mph1103I ATGCAT 1 cut(s) 1102
MroI TCCGGA 1 cut(s) 864
MseI TTAA 2 cut(s) 516, 1116
MslI CAYNNNNRTG 1 cut(s) 538
MspA1I CMGCKG 1 cut(s) 59
MspI CCGG 5 cut(s) 212, 245, 383, 865, 996
MspR9I CCNGG 2 cut(s) 996, 997
MunI CAATTG 1 cut(s) 956
Mva1269I GAATGC 1 cut(s) 1102
MvnI CGCG 2 cut(s) 311, 1138
MwoI GCNNNNNNNGC 7 cut(s) 68, 270, 306, 564, 695, 1097, 1135
NciI CCSGG 2 cut(s) 996, 997
NcoI CCATGG 1 cut(s) 339
NdeII GATC 6 cut(s) 163, 266, 536, 676, 741, 964
NlaIII CATG 8 cut(s) 67, 104, 182, 343, 358, 397, 543, 1111
NlaIV GGNNCC 2 cut(s) 132, 210
NsiI ATGCAT 1 cut(s) 1102
NspI RCATGY 2 cut(s) 358, 1111
PciSI GCTCTTC 1 cut(s) 241
PcsI WCGNNNNNNNCGW 2 cut(s) 103, 112
PctI GAATGC 1 cut(s) 1102
PfeI GAWTC 1 cut(s) 952
PkrI GCNGC 6 cut(s) 61, 187, 471, 560, 712, 1036
PleI GAGTC 2 cut(s) 612, 661
PpsI GAGTC 2 cut(s) 612, 661
Ppu21I YACGTR 1 cut(s) 107
PpuMI RGGWCCY 1 cut(s) 776
PsiI TTATAA 2 cut(s) 479, 1203
Psp5II RGGWCCY 1 cut(s) 776
PspN4I GGNNCC 2 cut(s) 132, 210
PspPI GGNCC 3 cut(s) 209, 530, 776
PspPPI RGGWCCY 1 cut(s) 776
PsrI GAACNNNNNNTAC 2 cut(s) 100, 132
PstI CTGCAG 1 cut(s) 190
PsuI RGATCY 2 cut(s) 266, 964
PvuII CAGCTG 1 cut(s) 59
RsaI GTAC 6 cut(s) 105, 132, 142, 175, 654, 1214
RsaNI GTAC 6 cut(s) 104, 131, 141, 174, 653, 1213
RseI CAYNNNNRTG 1 cut(s) 538
SapI GCTCTTC 1 cut(s) 241
SaqAI TTAA 2 cut(s) 516, 1116
SatI GCNGC 6 cut(s) 60, 186, 470, 559, 711, 1035
Sau3AI GATC 6 cut(s) 163, 266, 536, 676, 741, 964
Sau96I GGNCC 3 cut(s) 209, 530, 776
ScaI AGTACT 2 cut(s) 142, 175
SchI GAGTC 2 cut(s) 613, 661
ScrFI CCNGG 2 cut(s) 996, 997
SfaNI GCATC 3 cut(s) 866, 1066, 1109
SfcI CTRYAG 2 cut(s) 186, 280
SinI GGWCC 2 cut(s) 530, 776
SmaI CCCGGG 1 cut(s) 997
SmiMI CAYNNNNRTG 1 cut(s) 538
SmlI CTYRAG 3 cut(s) 428, 562, 821
SmoI CTYRAG 3 cut(s) 428, 562, 821
SnaBI TACGTA 1 cut(s) 107
Sse9I AATT 3 cut(s) 194, 956, 1003
SsiI CCGC 7 cut(s) 128, 153, 264, 469, 559, 807, 1138
SspMI CTAG 1 cut(s) 72
StyD4I CCNGG 2 cut(s) 994, 995
StyI CCWWGG 2 cut(s) 339, 983
TaaI ACNGT 2 cut(s) 22, 552
TaiI ACGT 4 cut(s) 100, 109, 465, 577
TaqI TCGA 1 cut(s) 314
TasI AATT 3 cut(s) 194, 956, 1003
TatI WGTACW 2 cut(s) 140, 173
TauI GCSGC 2 cut(s) 472, 561
TfiI GAWTC 1 cut(s) 952
Tru1I TTAA 2 cut(s) 516, 1116
Tru9I TTAA 2 cut(s) 516, 1116
TscAI CASTG 1 cut(s) 739
TseI GCWGC 4 cut(s) 59, 185, 710, 1034
TspDTI ATGAA 5 cut(s) 17, 111, 382, 1044, 1109
TspMI CCCGGG 1 cut(s) 995
TspRI CASTG 1 cut(s) 739
VpaK11BI GGWCC 2 cut(s) 530, 776
XagI CCTNNNNNAGG 1 cut(s) 203
XapI RAATTY 2 cut(s) 194, 1003
XceI RCATGY 2 cut(s) 358, 1111
XmaI CCCGGG 1 cut(s) 995
XmiI GTMKAC 1 cut(s) 283
XspI CTAG 1 cut(s) 72
ZrmI AGTACT 2 cut(s) 142, 175
Zsp2I ATGCAT 1 cut(s) 1102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.