Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004267

Physical Location & Seq

Genomic Coordinates Reverse (-)

77837399 .. 77839220

Gene Structure 1822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG603100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCAGGAAGGTCTTGTTACAGAGATGTCCTGCCATTTACAGCCATGGTGACTATGGAGTCCATGGACGTGGGCTTGAACACACTGTTCAAAGCTGCAACAATGACAGGAATGAGCTACCATGTCTTTATTGCCTACATTTACTCTATAGCTGCTCTTGCTCTTGTTCCAGCTCCTTTCATCTCCCACAGGATAGATCTTAGTCTTTCAATTCATTTAACAATTTCAAACTCAAAGGCTTCAACTTTGTTAACATGCATCTCTAATCTGCTTTGCAGATCAAGGAGGCTTCCTCCCCTCAACTTTTCCATTTTGAGCAAAATTCTTCTTCTTGGGCTAATTGGGAGCTCATCTCAGATAATGGGGTATGCAGGAATCAATTACAGCTCTCCAATGCTTTATTCTGCTATCAGCAACCTTCTGCCAGCTTTCACTTTCATTCTTGCCATCATTTTCAGGTTGGAAACTGTAGCATTGAAAACCAGAAGCACTCAAGCTAAAATTGTTGGTACTATAGTTTCACTTGCAGGTGCATTTGTGGTGACTCTATATAAGGGCCCCCGAATTTCCCTCACTGGCCGAACCCAATCTCTTTTGCTAAACTCAACACCTTCAAAATCAAACTGGATCATTGGAGGCCTTCTGATAACAGCCGAGTATATATTGGTGACACTTTGGTACATTGTTCTGGCACAAATTATGAAAGAGTACCCAAATGAATTAACTGTGATCTTCTTCTACAATGTTGTGGTCAGCATCGTAGCTGTAGTTGTTGGTTTGATTACAGAAAAAAATCCAAATGCTTGGAGATTGAGACCTGATATGGCATTGGTATCCATCCTGTGCTCAGGACTACTAAACTCATTATTGAACAATACCGTTCACACATGGACCTTGCGCTTGAAGGGACCTGTGTATGTGACAATGTTCAAGCCATTGTCGATTGCCATTGCTGTTGTCATGGGCGTAACGTTCCTTGGTGATACACTTCATCTGGGAAGGTTTGCTATAGCAACTAACCAATCCCATTTTTGGTTTAAAATCTGTACATTATTGAGATTTAAGATTCAATGTGCTCGTTGCATCTTTTTTCTGCATTTTGCAGCCTACTTGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

372

Amino Acids

41.11

Weight (kDa)

9.77

Isoelectric Point (pI)

27.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28050 AT3G28060
fragaria_vesca	FvH4_6g50360 FvH4_6g50360 FvH4_6g50360 FvH4_6g50360 FvH4_6g50360
malus_domestica	MD09G1036900.v1.1 MD17G1038300.v1.1
prunus_persica	Prupe.3G280700_v2.0.a1 Prupe.3G280700_v2.0.a1 Prupe.3G280700_v2.0.a1
pyrus_communis	pycom111g02970 pycom17g03450
rosa_chinensis	RchiOBHm_Chr2g0170681 RchiOBHm_Chr2g0170701
rosa_laevigata	RLG00000021975 RLG00000021976
rosa_multiflora	Rmu_sc0003787.1_g000008 Rmu_sc0003787.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081110 Rroxscaffold_2G00081120
rosa_rugosa	Rorug02G0550400 Rorug02G0550500
rosa_samantha	Rh2AG623400 Rh2AG623500 Rh2BG633900 Rh2BG634000 Rh2CG603100 Rh2CG603200
rosa_wichuraiana	Rw2G051630 Rw2G051640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	518
AasI	GACNNNNNNGTC	1 cut(s)	58
Acc36I	ACCTGC	1 cut(s)	518
AclI	AACGTT	1 cut(s)	971
AclWI	GGATC	1 cut(s)	635
AcoI	YGGCCR	1 cut(s)	577
AcsI	RAATTY	2 cut(s)	321, 564
AfaI	GTAC	4 cut(s)	511, 680, 710, 1048
AfiI	CCNNNNNNNGG	1 cut(s)	1032
AjiI	CACGTC	1 cut(s)	70
AjuI	GAANNNNNNNTTGG	2 cut(s)	385, 417
AluBI	AGCT	9 cut(s)	95, 117, 152, 173, 348, 387, 428, 497, 764
AluI	AGCT	9 cut(s)	95, 117, 152, 173, 348, 387, 428, 497, 764
Alw21I	GWGCWC	3 cut(s)	350, 848, 1078
Alw26I	GTCTC	1 cut(s)	808
AlwI	GGATC	1 cut(s)	635
AoxI	GGCC	3 cut(s)	556, 577, 637
ApaI	GGGCCC	1 cut(s)	560
ApeKI	GCWGC	3 cut(s)	95, 152, 1103
ApoI	RAATTY	2 cut(s)	321, 564
AspLEI	GCGC	1 cut(s)	900
AspS9I	GGNCC	4 cut(s)	556, 557, 891, 908
AsuHPI	GGTGA	4 cut(s)	61, 553, 679, 992
AvaII	GGWCC	2 cut(s)	891, 908
BaeGI	GKGCMC	1 cut(s)	560
BaeI	ACNNNNGTAYC	2 cut(s)	501, 534
BanII	GRGCYC	2 cut(s)	350, 560
Bbv12I	GWGCWC	3 cut(s)	350, 848, 1078
BbvI	GCAGC	3 cut(s)	82, 139, 1115
BccI	CCATC	2 cut(s)	455, 845
BciVI	GTATCC	1 cut(s)	844
BcoDI	GTCTC	1 cut(s)	808
BfmI	CTRYAG	5 cut(s)	147, 468, 513, 765, 1008
BfuAI	ACCTGC	1 cut(s)	518
BfuI	GTATCC	1 cut(s)	844
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	3 cut(s)	96, 153, 1104
BlsI	GCNGC	3 cut(s)	97, 154, 1105
Bme18I	GGWCC	2 cut(s)	891, 908
BmgBI	CACGTC	1 cut(s)	70
BmgT120I	GGNCC	4 cut(s)	556, 557, 891, 908
BmiI	GGNNCC	3 cut(s)	558, 559, 909
BmsI	GCATC	3 cut(s)	267, 765, 1092
BplI	GAGNNNNNCTC	4 cut(s)	277, 309, 337, 369
Bpu10I	CCTNAGC	1 cut(s)	847
BpuEI	CTTGAG	1 cut(s)	477
BsaI	GGTCTC	1 cut(s)	808
BsaJI	CCNNGG	3 cut(s)	45, 63, 976
Bsc4I	CCNNNNNNNGG	1 cut(s)	1032
Bse1I	ACTGG	2 cut(s)	580, 629
Bse3DI	GCAATG	1 cut(s)	948
BseDI	CCNNGG	3 cut(s)	45, 63, 976
BseGI	GGATG	1 cut(s)	837
BseLI	CCNNNNNNNGG	1 cut(s)	1032
BseMI	GCAATG	1 cut(s)	948
BseMII	CTCAG	2 cut(s)	368, 861
BseNI	ACTGG	2 cut(s)	580, 629
BseSI	GKGCMC	1 cut(s)	560
BseXI	GCAGC	3 cut(s)	82, 139, 1115
BshFI	GGCC	3 cut(s)	558, 579, 639
BsiHKAI	GWGCWC	3 cut(s)	350, 848, 1078
BslFI	GGGAC	1 cut(s)	921
BslI	CCNNNNNNNGG	1 cut(s)	1032
BsmAI	GTCTC	1 cut(s)	808
BsmFI	GGGAC	1 cut(s)	921
BsnI	GGCC	3 cut(s)	558, 579, 639
Bso31I	GGTCTC	1 cut(s)	808
Bsp120I	GGGCCC	1 cut(s)	556
Bsp1286I	GDGCHC	4 cut(s)	350, 560, 848, 1078
Bsp1407I	TGTACA	1 cut(s)	1046
Bsp143I	GATC	4 cut(s)	196, 278, 627, 729
Bsp19I	CCATGG	2 cut(s)	45, 63
BspANI	GGCC	3 cut(s)	558, 579, 639
BspCNI	CTCAG	2 cut(s)	367, 860
BspLI	GGNNCC	3 cut(s)	558, 559, 909
BspMI	ACCTGC	1 cut(s)	518
BspPI	GGATC	1 cut(s)	635
BspTNI	GGTCTC	1 cut(s)	808
BsrDI	GCAATG	1 cut(s)	948
BsrGI	TGTACA	1 cut(s)	1046
BsrI	ACTGG	2 cut(s)	580, 629
BssECI	CCNNGG	3 cut(s)	45, 63, 976
BssMI	GATC	4 cut(s)	196, 278, 627, 729
BssT1I	CCWWGG	3 cut(s)	45, 63, 976
Bst4CI	ACNGT	4 cut(s)	87, 469, 727, 880
BstAUI	TGTACA	1 cut(s)	1046
BstC8I	GCNNGC	1 cut(s)	426
BstDEI	CTNAG	3 cut(s)	200, 354, 847
BstDSI	CCRYGG	2 cut(s)	45, 63
BstF5I	GGATG	1 cut(s)	837
BstHHI	GCGC	1 cut(s)	900
BstKTI	GATC	4 cut(s)	199, 281, 630, 732
BstMAI	GTCTC	1 cut(s)	808
BstMBI	GATC	4 cut(s)	196, 278, 627, 729
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	258
BstSFI	CTRYAG	5 cut(s)	147, 468, 513, 765, 1008
BstSLI	GKGCMC	1 cut(s)	560
BstV1I	GCAGC	3 cut(s)	82, 139, 1115
BstX2I	RGATCY	1 cut(s)	196
BstXI	CCANNNNNNTGG	2 cut(s)	70, 804
BstYI	RGATCY	1 cut(s)	196
BsuI	GTATCC	1 cut(s)	844
BsuRI	GGCC	3 cut(s)	558, 579, 639
BtgI	CCRYGG	2 cut(s)	45, 63
BtrI	CACGTC	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	837
BtsIMutI	CAGTG	2 cut(s)	83, 573
BveI	ACCTGC	1 cut(s)	518
Cac8I	GCNNGC	1 cut(s)	426
CfoI	GCGC	1 cut(s)	900
Cfr13I	GGNCC	4 cut(s)	556, 557, 891, 908
Csp6I	GTAC	4 cut(s)	510, 679, 709, 1047
CviAII	CATG	6 cut(s)	46, 64, 122, 255, 888, 961
CviQI	GTAC	4 cut(s)	510, 679, 709, 1047
DdeI	CTNAG	3 cut(s)	200, 354, 847
DpnI	GATC	4 cut(s)	198, 280, 629, 731
DpnII	GATC	4 cut(s)	196, 278, 627, 729
DraI	TTTAAA	1 cut(s)	1039
DrdI	GACNNNNNNGTC	1 cut(s)	58
DseDI	GACNNNNNNGTC	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	577
Ecl136II	GAGCTC	1 cut(s)	348
Eco130I	CCWWGG	3 cut(s)	45, 63, 976
Eco147I	AGGCCT	1 cut(s)	639
Eco24I	GRGCYC	2 cut(s)	350, 560
Eco31I	GGTCTC	1 cut(s)	808
Eco47I	GGWCC	2 cut(s)	891, 908
Eco53kI	GAGCTC	1 cut(s)	348
EcoICRI	GAGCTC	1 cut(s)	348
EcoO109I	RGGNCCY	3 cut(s)	556, 557, 908
EcoT14I	CCWWGG	3 cut(s)	45, 63, 976
EcoT22I	ATGCAT	1 cut(s)	260
EcoT38I	GRGCYC	2 cut(s)	350, 560
ErhI	CCWWGG	3 cut(s)	45, 63, 976
FaeI	CATG	6 cut(s)	49, 67, 125, 258, 891, 964
FaqI	GGGAC	1 cut(s)	921
FatI	CATG	6 cut(s)	45, 63, 121, 254, 887, 960
Fnu4HI	GCNGC	3 cut(s)	96, 153, 1104
FokI	GGATG	1 cut(s)	824
FriOI	GRGCYC	2 cut(s)	350, 560
Fsp4HI	GCNGC	3 cut(s)	96, 153, 1104
GlaI	GCGC	1 cut(s)	899
GluI	GCNGC	3 cut(s)	96, 153, 1104
HaeIII	GGCC	3 cut(s)	558, 579, 639
HhaI	GCGC	1 cut(s)	900
Hin1II	CATG	6 cut(s)	49, 67, 125, 258, 891, 964
Hin6I	GCGC	1 cut(s)	898
HinP1I	GCGC	1 cut(s)	898
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HinfI	GANTC	4 cut(s)	59, 375, 544, 1066
HpaI	GTTAAC	1 cut(s)	252
HphI	GGTGA	4 cut(s)	61, 553, 679, 992
Hpy166II	GTNNAC	2 cut(s)	252, 883
Hpy188I	TCNGA	2 cut(s)	357, 645
Hpy188III	TCNNGA	1 cut(s)	849
Hpy8I	GTNNAC	2 cut(s)	252, 883
HpyAV	CCTTC	6 cut(s)	3, 428, 621, 650, 898, 993
HpyCH4III	ACNGT	4 cut(s)	87, 469, 727, 880
HpyCH4IV	ACGT	2 cut(s)	69, 971
HpyCH4V	TGCA	9 cut(s)	98, 258, 276, 371, 527, 533, 1083, 1096, 1103
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	3 cut(s)	200, 354, 847
HpySE526I	ACGT	2 cut(s)	69, 971
Hsp92II	CATG	6 cut(s)	49, 67, 125, 258, 891, 964
HspAI	GCGC	1 cut(s)	898
KspAI	GTTAAC	1 cut(s)	252
Kzo9I	GATC	4 cut(s)	196, 278, 627, 729
LmnI	GCTCC	2 cut(s)	178, 345
Lsp1109I	GCAGC	3 cut(s)	82, 139, 1115
LweI	GCATC	3 cut(s)	267, 765, 1092
MaeII	ACGT	2 cut(s)	69, 971
MaeIII	GTNAC	6 cut(s)	17, 49, 541, 667, 919, 967
MalI	GATC	4 cut(s)	198, 280, 629, 731
MboI	GATC	4 cut(s)	196, 278, 627, 729
MboII	GAAGA	4 cut(s)	317, 320, 724, 727
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	4 cut(s)	350, 560, 848, 1078
MluCI	AATT	9 cut(s)	210, 222, 321, 339, 379, 501, 564, 696, 719
MlyI	GAGTC	2 cut(s)	68, 538
MmeI	TCCRAC	1 cut(s)	441
MnlI	CCTC	5 cut(s)	279, 303, 308, 581, 629
Mph1103I	ATGCAT	1 cut(s)	260
MseI	TTAA	5 cut(s)	218, 251, 722, 1038, 1062
MslI	CAYNNNNRTG	1 cut(s)	68
MwoI	GCNNNNNNNGC	1 cut(s)	158
NcoI	CCATGG	2 cut(s)	45, 63
NdeII	GATC	4 cut(s)	196, 278, 627, 729
NlaIII	CATG	6 cut(s)	49, 67, 125, 258, 891, 964
NlaIV	GGNNCC	3 cut(s)	558, 559, 909
NmeAIII	GCCGAG	1 cut(s)	679
NmuCI	GTSAC	4 cut(s)	49, 541, 667, 919
NsiI	ATGCAT	1 cut(s)	260
NspI	RCATGY	1 cut(s)	258
PaqCI	CACCTGC	1 cut(s)	518
PceI	AGGCCT	1 cut(s)	639
PfeI	GAWTC	2 cut(s)	375, 1066
PkrI	GCNGC	3 cut(s)	97, 154, 1105
PleI	GAGTC	2 cut(s)	67, 538
PpsI	GAGTC	2 cut(s)	67, 538
PpuMI	RGGWCCY	1 cut(s)	908
Psp124BI	GAGCTC	1 cut(s)	350
Psp1406I	AACGTT	1 cut(s)	971
Psp5II	RGGWCCY	1 cut(s)	908
PspN4I	GGNNCC	3 cut(s)	558, 559, 909
PspOMI	GGGCCC	1 cut(s)	556
PspPI	GGNCC	4 cut(s)	556, 557, 891, 908
PspPPI	RGGWCCY	1 cut(s)	908
PsuI	RGATCY	1 cut(s)	196
RsaI	GTAC	4 cut(s)	511, 680, 710, 1048
RsaNI	GTAC	4 cut(s)	510, 679, 709, 1047
RseI	CAYNNNNRTG	1 cut(s)	68
SacI	GAGCTC	1 cut(s)	350
SaqAI	TTAA	5 cut(s)	218, 251, 722, 1038, 1062
SatI	GCNGC	3 cut(s)	96, 153, 1104
Sau3AI	GATC	4 cut(s)	196, 278, 627, 729
Sau96I	GGNCC	4 cut(s)	556, 557, 891, 908
SchI	GAGTC	2 cut(s)	68, 538
SduI	GDGCHC	4 cut(s)	350, 560, 848, 1078
SfaNI	GCATC	3 cut(s)	267, 765, 1092
SfcI	CTRYAG	5 cut(s)	147, 468, 513, 765, 1008
SinI	GGWCC	2 cut(s)	891, 908
SmiMI	CAYNNNNRTG	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	492
SmoI	CTYRAG	1 cut(s)	492
Sse9I	AATT	9 cut(s)	210, 222, 321, 339, 379, 501, 564, 696, 719
SseBI	AGGCCT	1 cut(s)	639
SstI	GAGCTC	1 cut(s)	350
StuI	AGGCCT	1 cut(s)	639
StyI	CCWWGG	3 cut(s)	45, 63, 976
TaaI	ACNGT	4 cut(s)	87, 469, 727, 880
TaiI	ACGT	2 cut(s)	72, 974
TaqI	TCGA	1 cut(s)	941
TasI	AATT	9 cut(s)	210, 222, 321, 339, 379, 501, 564, 696, 719
TatI	WGTACW	1 cut(s)	1046
TfiI	GAWTC	2 cut(s)	375, 1066
Tru1I	TTAA	5 cut(s)	218, 251, 722, 1038, 1062
Tru9I	TTAA	5 cut(s)	218, 251, 722, 1038, 1062
TscAI	CASTG	2 cut(s)	90, 580
TseFI	GTSAC	4 cut(s)	49, 541, 667, 919
TseI	GCWGC	3 cut(s)	95, 152, 1103
Tsp45I	GTSAC	4 cut(s)	49, 541, 667, 919
TspDTI	ATGAA	6 cut(s)	169, 203, 427, 716, 732, 980
TspRI	CASTG	2 cut(s)	90, 580
VpaK11BI	GGWCC	2 cut(s)	891, 908
XapI	RAATTY	2 cut(s)	321, 564
XceI	RCATGY	1 cut(s)	258
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
Zsp2I	ATGCAT	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.