Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004267

Physical Location & Seq

Genomic Coordinates Reverse (-)

84704418 .. 84706377

Gene Structure 1960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG623400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCAGGAAGGTCTTGTTACAGAGATGTCCTGCCATTTACAGCCATGGTGACTATGGAGTCCATGGACGTGGGCTTGAACACACTGTTCAAAGCTGCAACAATGACAGGAATGAGCTACCATGTCTTTATTGCCTACATTTACTCCATAGCTGCTCTTGCTCTTGTTCCAGCTCCTTTCATCTCCCACAGATCAAGGAGGCTTCCTCCCCTCAACTTTTCCATTTTGAGCAAAATTCTTCTTCTTGGGCTAATTGGGAGCTCATCTCAGATAATGGGGTATGCAGGAATCAATTACAGCTCTCCAATGCTTTATTCTGCTATCAGCAACCTTCTGCCAGCTTTCACTTTCATTCTTGCCATCATTTTCAGGTTGGAAACTGTAGCATTGAAAACCAGAAGCACTCAAGCTAAAATTGTTGGTACTATAGTTTCACTCGCAGGTGCATTTGTGGTGACTCTATATAAGGGCCCCCGAATTTCCCTCACTGGCCGAACCCAATCTCTTTTGCTAAACTCAACACCTTCAAAATCAAACTGGGTCATTGGAGGCCTTCTGATAACAGCCGAGTATATATTGGTGACACTTTGGTACATTGTTCTGGCACAAATTATGAAAGAGTACCCAAATGAATTAACTGTGATCTTCTTCTACAATGTTGTGGTCAGCATCGTAGCTGTAGTTGTTGGTTTGATTACAGAAAAAAATCCAAATGCTTGGAGATTGAGACCTGATATGGCATTGGTATCCATCCTGTGCTCAGGACTACTAAACTCATTATTGAACAATACCGTTCACACATGGACCTTGCGCTTGAAGGGACCTGTGTATGTGACAATGTTCAAGCCGTTGTCAATTGCCATTGCTGTTGTCATGGGCGTAACGTTCCTTGGTGATACACTTCATCTGGGAAGCCTACTTGGAGCAACAATTATATCAGTTGGGTTTTACACGGTACTGTGGGGAAAAGCTAAAGAAGAGACTCGTGAAGACTCTGGAGCTGATAGCCTGGAATCACCGTCTAGCAATAAGGCCCCCTTATTGCAAACCTACAAAACGGAGAATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

356

Amino Acids

38.84

Weight (kDa)

9.54

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	25 - 153	9.7e-06	EamA-like transporter family
EamA	PF00892	198 - 320	3.3e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28050 AT3G28060
fragaria_vesca	FvH4_6g50360 FvH4_6g50360 FvH4_6g50360 FvH4_6g50360 FvH4_6g50360
malus_domestica	MD09G1036900.v1.1 MD17G1038300.v1.1
prunus_persica	Prupe.3G280700_v2.0.a1 Prupe.3G280700_v2.0.a1 Prupe.3G280700_v2.0.a1
pyrus_communis	pycom111g02970 pycom17g03450
rosa_chinensis	RchiOBHm_Chr2g0170681 RchiOBHm_Chr2g0170701
rosa_laevigata	RLG00000021975 RLG00000021976
rosa_multiflora	Rmu_sc0003787.1_g000008 Rmu_sc0003787.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081110 Rroxscaffold_2G00081120
rosa_rugosa	Rorug02G0550400 Rorug02G0550500
rosa_samantha	Rh2AG623400 Rh2AG623500 Rh2BG633900 Rh2BG634000 Rh2CG603100 Rh2CG603200
rosa_wichuraiana	Rw2G051630 Rw2G051640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	431
AasI	GACNNNNNNGTC	1 cut(s)	58
Acc36I	ACCTGC	1 cut(s)	431
AclI	AACGTT	1 cut(s)	884
AcoI	YGGCCR	1 cut(s)	490
AcsI	RAATTY	2 cut(s)	234, 477
AfaI	GTAC	4 cut(s)	424, 593, 623, 957
AgsI	TTSAA	7 cut(s)	79, 91, 391, 528, 784, 817, 844
AjiI	CACGTC	1 cut(s)	70
AjnI	CCWGG	1 cut(s)	1008
AjuI	GAANNNNNNNTTGG	2 cut(s)	298, 330
Alw21I	GWGCWC	2 cut(s)	263, 761
Alw26I	GTCTC	2 cut(s)	721, 974
AoxI	GGCC	4 cut(s)	469, 490, 550, 1032
ApaI	GGGCCC	1 cut(s)	473
ApeKI	GCWGC	2 cut(s)	95, 152
ApoI	RAATTY	2 cut(s)	234, 477
AspLEI	GCGC	1 cut(s)	813
AspS9I	GGNCC	5 cut(s)	469, 470, 804, 821, 1033
AsuHPI	GGTGA	5 cut(s)	61, 466, 592, 905, 1008
AvaII	GGWCC	2 cut(s)	804, 821
BaeGI	GKGCMC	1 cut(s)	473
BaeI	ACNNNNGTAYC	2 cut(s)	414, 447
BanII	GRGCYC	2 cut(s)	263, 473
BauI	CACGAG	1 cut(s)	984
BbsI	GAAGAC	1 cut(s)	996
Bbv12I	GWGCWC	2 cut(s)	263, 761
BbvI	GCAGC	2 cut(s)	82, 139
BccI	CCATC	2 cut(s)	368, 758
BceAI	ACGGC	1 cut(s)	832
BciT130I	CCWGG	1 cut(s)	1010
BciVI	GTATCC	1 cut(s)	757
BcoDI	GTCTC	2 cut(s)	721, 974
BfaI	CTAG	2 cut(s)	1023, 1069
BfmI	CTRYAG	3 cut(s)	381, 426, 678
BfuAI	ACCTGC	1 cut(s)	431
BfuI	GTATCC	1 cut(s)	757
BisI	GCNGC	2 cut(s)	96, 153
BlsI	GCNGC	2 cut(s)	97, 154
Bme1390I	CCNGG	1 cut(s)	1010
Bme18I	GGWCC	2 cut(s)	804, 821
BmgBI	CACGTC	1 cut(s)	70
BmgT120I	GGNCC	5 cut(s)	469, 470, 804, 821, 1033
BmiI	GGNNCC	4 cut(s)	471, 472, 822, 1035
BmrFI	CCNGG	1 cut(s)	1010
BmrI	ACTGGG	1 cut(s)	547
BmsI	GCATC	1 cut(s)	678
BmuI	ACTGGG	1 cut(s)	547
BpiI	GAAGAC	1 cut(s)	996
BplI	GAGNNNNNCTC	4 cut(s)	190, 222, 250, 282
BpmI	CTGGAG	1 cut(s)	1017
Bpu10I	CCTNAGC	1 cut(s)	760
BpuEI	CTTGAG	1 cut(s)	390
BsaI	GGTCTC	1 cut(s)	721
BsaJI	CCNNGG	3 cut(s)	45, 63, 889
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bse1I	ACTGG	2 cut(s)	493, 542
Bse3DI	GCAATG	1 cut(s)	861
BseBI	CCWGG	1 cut(s)	1010
BseDI	CCNNGG	3 cut(s)	45, 63, 889
BseGI	GGATG	1 cut(s)	750
BseMI	GCAATG	1 cut(s)	861
BseMII	CTCAG	2 cut(s)	281, 774
BseNI	ACTGG	2 cut(s)	493, 542
BseSI	GKGCMC	1 cut(s)	473
BseXI	GCAGC	2 cut(s)	82, 139
BshFI	GGCC	4 cut(s)	471, 492, 552, 1034
BsiHKAI	GWGCWC	2 cut(s)	263, 761
BslFI	GGGAC	1 cut(s)	834
BsmAI	GTCTC	2 cut(s)	721, 974
BsmFI	GGGAC	1 cut(s)	834
BsnI	GGCC	4 cut(s)	471, 492, 552, 1034
Bso31I	GGTCTC	1 cut(s)	721
Bsp120I	GGGCCC	1 cut(s)	469
Bsp1286I	GDGCHC	3 cut(s)	263, 473, 761
Bsp143I	GATC	2 cut(s)	191, 642
Bsp19I	CCATGG	2 cut(s)	45, 63
BspANI	GGCC	4 cut(s)	471, 492, 552, 1034
BspCNI	CTCAG	2 cut(s)	280, 773
BspLI	GGNNCC	4 cut(s)	471, 472, 822, 1035
BspMI	ACCTGC	1 cut(s)	431
BspTNI	GGTCTC	1 cut(s)	721
BsrDI	GCAATG	1 cut(s)	861
BsrI	ACTGG	2 cut(s)	493, 542
BssECI	CCNNGG	3 cut(s)	45, 63, 889
BssMI	GATC	2 cut(s)	191, 642
BssSI	CACGAG	1 cut(s)	984
BssT1I	CCWWGG	3 cut(s)	45, 63, 889
Bst2BI	CACGAG	1 cut(s)	984
Bst2UI	CCWGG	1 cut(s)	1010
Bst4CI	ACNGT	7 cut(s)	87, 382, 640, 793, 955, 960, 1020
Bst6I	CTCTTC	1 cut(s)	972
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	2 cut(s)	267, 760
BstDSI	CCRYGG	2 cut(s)	45, 63
BstF5I	GGATG	1 cut(s)	750
BstHHI	GCGC	1 cut(s)	813
BstKTI	GATC	2 cut(s)	194, 645
BstMAI	GTCTC	2 cut(s)	721, 974
BstMBI	GATC	2 cut(s)	191, 642
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	1 cut(s)	1010
BstSCI	CCNGG	1 cut(s)	1008
BstSFI	CTRYAG	3 cut(s)	381, 426, 678
BstSLI	GKGCMC	1 cut(s)	473
BstV1I	GCAGC	2 cut(s)	82, 139
BstV2I	GAAGAC	1 cut(s)	996
BstXI	CCANNNNNNTGG	2 cut(s)	70, 717
BsuI	GTATCC	1 cut(s)	757
BsuRI	GGCC	4 cut(s)	471, 492, 552, 1034
BtgI	CCRYGG	2 cut(s)	45, 63
BtrI	CACGTC	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	750
BtsIMutI	CAGTG	2 cut(s)	83, 486
BveI	ACCTGC	1 cut(s)	431
Cac8I	GCNNGC	1 cut(s)	339
CfoI	GCGC	1 cut(s)	813
Cfr13I	GGNCC	5 cut(s)	469, 470, 804, 821, 1033
Csp6I	GTAC	4 cut(s)	423, 592, 622, 956
CviAII	CATG	5 cut(s)	46, 64, 122, 801, 874
CviQI	GTAC	4 cut(s)	423, 592, 622, 956
DdeI	CTNAG	2 cut(s)	267, 760
DpnI	GATC	2 cut(s)	193, 644
DpnII	GATC	2 cut(s)	191, 642
DrdI	GACNNNNNNGTC	1 cut(s)	58
DseDI	GACNNNNNNGTC	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	490
Eam1104I	CTCTTC	1 cut(s)	972
EarI	CTCTTC	1 cut(s)	972
Ecl136II	GAGCTC	1 cut(s)	261
Eco130I	CCWWGG	3 cut(s)	45, 63, 889
Eco147I	AGGCCT	1 cut(s)	552
Eco24I	GRGCYC	2 cut(s)	263, 473
Eco31I	GGTCTC	1 cut(s)	721
Eco47I	GGWCC	2 cut(s)	804, 821
Eco53kI	GAGCTC	1 cut(s)	261
EcoICRI	GAGCTC	1 cut(s)	261
EcoO109I	RGGNCCY	4 cut(s)	469, 470, 821, 1033
EcoRII	CCWGG	1 cut(s)	1008
EcoT14I	CCWWGG	3 cut(s)	45, 63, 889
EcoT38I	GRGCYC	2 cut(s)	263, 473
ErhI	CCWWGG	3 cut(s)	45, 63, 889
FaeI	CATG	5 cut(s)	49, 67, 125, 804, 877
FalI	AAGNNNNNCTT	2 cut(s)	1022, 1054
FaqI	GGGAC	1 cut(s)	834
FatI	CATG	5 cut(s)	45, 63, 121, 800, 873
Fnu4HI	GCNGC	2 cut(s)	96, 153
FokI	GGATG	1 cut(s)	737
FriOI	GRGCYC	2 cut(s)	263, 473
Fsp4HI	GCNGC	2 cut(s)	96, 153
FspBI	CTAG	2 cut(s)	1023, 1069
GlaI	GCGC	1 cut(s)	812
GluI	GCNGC	2 cut(s)	96, 153
GsuI	CTGGAG	1 cut(s)	1017
HaeIII	GGCC	4 cut(s)	471, 492, 552, 1034
HhaI	GCGC	1 cut(s)	813
Hin1II	CATG	5 cut(s)	49, 67, 125, 804, 877
Hin6I	GCGC	1 cut(s)	811
HinP1I	GCGC	1 cut(s)	811
HinfI	GANTC	6 cut(s)	59, 288, 457, 982, 992, 1013
HphI	GGTGA	5 cut(s)	61, 466, 592, 905, 1008
Hpy166II	GTNNAC	1 cut(s)	796
Hpy188I	TCNGA	2 cut(s)	270, 558
Hpy188III	TCNNGA	3 cut(s)	762, 986, 996
Hpy8I	GTNNAC	1 cut(s)	796
HpyAV	CCTTC	5 cut(s)	3, 341, 534, 563, 811
HpyCH4III	ACNGT	7 cut(s)	87, 382, 640, 793, 955, 960, 1020
HpyCH4IV	ACGT	2 cut(s)	69, 884
HpyCH4V	TGCA	4 cut(s)	98, 284, 446, 1045
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	2 cut(s)	267, 760
HpySE526I	ACGT	2 cut(s)	69, 884
Hsp92II	CATG	5 cut(s)	49, 67, 125, 804, 877
HspAI	GCGC	1 cut(s)	811
Kzo9I	GATC	2 cut(s)	191, 642
LmnI	GCTCC	4 cut(s)	178, 258, 923, 998
Lsp1109I	GCAGC	2 cut(s)	82, 139
LweI	GCATC	1 cut(s)	678
MaeI	CTAG	2 cut(s)	1023, 1069
MaeII	ACGT	2 cut(s)	69, 884
MaeIII	GTNAC	6 cut(s)	17, 49, 454, 580, 832, 880
MalI	GATC	2 cut(s)	193, 644
MboI	GATC	2 cut(s)	191, 642
MboII	GAAGA	6 cut(s)	230, 233, 637, 640, 989, 1001
MfeI	CAATTG	1 cut(s)	855
MhlI	GDGCHC	3 cut(s)	263, 473, 761
MluCI	AATT	9 cut(s)	234, 252, 292, 414, 477, 609, 632, 855, 930
MlyI	GAGTC	4 cut(s)	68, 451, 976, 986
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	5 cut(s)	192, 216, 221, 494, 542
MseI	TTAA	1 cut(s)	635
MslI	CAYNNNNRTG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	1010
MunI	CAATTG	1 cut(s)	855
MvaI	CCWGG	1 cut(s)	1010
MwoI	GCNNNNNNNGC	1 cut(s)	158
NcoI	CCATGG	2 cut(s)	45, 63
NdeII	GATC	2 cut(s)	191, 642
NlaIII	CATG	5 cut(s)	49, 67, 125, 804, 877
NlaIV	GGNNCC	4 cut(s)	471, 472, 822, 1035
NmeAIII	GCCGAG	1 cut(s)	592
NmuCI	GTSAC	4 cut(s)	49, 454, 580, 832
PaqCI	CACCTGC	1 cut(s)	431
PceI	AGGCCT	1 cut(s)	552
PfeI	GAWTC	2 cut(s)	288, 1013
PkrI	GCNGC	2 cut(s)	97, 154
PleI	GAGTC	4 cut(s)	67, 451, 976, 986
PpsI	GAGTC	4 cut(s)	67, 451, 976, 986
PpuMI	RGGWCCY	1 cut(s)	821
Psp124BI	GAGCTC	1 cut(s)	263
Psp1406I	AACGTT	1 cut(s)	884
Psp5II	RGGWCCY	1 cut(s)	821
Psp6I	CCWGG	1 cut(s)	1008
PspGI	CCWGG	1 cut(s)	1008
PspN4I	GGNNCC	4 cut(s)	471, 472, 822, 1035
PspOMI	GGGCCC	1 cut(s)	469
PspPI	GGNCC	5 cut(s)	469, 470, 804, 821, 1033
PspPPI	RGGWCCY	1 cut(s)	821
RsaI	GTAC	4 cut(s)	424, 593, 623, 957
RsaNI	GTAC	4 cut(s)	423, 592, 622, 956
RseI	CAYNNNNRTG	1 cut(s)	68
SacI	GAGCTC	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	635
SatI	GCNGC	2 cut(s)	96, 153
Sau3AI	GATC	2 cut(s)	191, 642
Sau96I	GGNCC	5 cut(s)	469, 470, 804, 821, 1033
SchI	GAGTC	4 cut(s)	68, 451, 976, 986
ScrFI	CCNGG	1 cut(s)	1010
SduI	GDGCHC	3 cut(s)	263, 473, 761
SfaNI	GCATC	1 cut(s)	678
SfcI	CTRYAG	3 cut(s)	381, 426, 678
SinI	GGWCC	2 cut(s)	804, 821
SmiMI	CAYNNNNRTG	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
Sse9I	AATT	9 cut(s)	234, 252, 292, 414, 477, 609, 632, 855, 930
SseBI	AGGCCT	1 cut(s)	552
SspMI	CTAG	2 cut(s)	1023, 1069
SstI	GAGCTC	1 cut(s)	263
StuI	AGGCCT	1 cut(s)	552
StyD4I	CCNGG	1 cut(s)	1008
StyI	CCWWGG	3 cut(s)	45, 63, 889
TaaI	ACNGT	7 cut(s)	87, 382, 640, 793, 955, 960, 1020
TaiI	ACGT	2 cut(s)	72, 887
TasI	AATT	9 cut(s)	234, 252, 292, 414, 477, 609, 632, 855, 930
TfiI	GAWTC	2 cut(s)	288, 1013
Tru1I	TTAA	1 cut(s)	635
Tru9I	TTAA	1 cut(s)	635
TscAI	CASTG	2 cut(s)	90, 493
TseFI	GTSAC	4 cut(s)	49, 454, 580, 832
TseI	GCWGC	2 cut(s)	95, 152
Tsp45I	GTSAC	4 cut(s)	49, 454, 580, 832
TspDTI	ATGAA	5 cut(s)	169, 340, 629, 645, 893
TspRI	CASTG	2 cut(s)	90, 493
VpaK11BI	GGWCC	2 cut(s)	804, 821
XapI	RAATTY	2 cut(s)	234, 477
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XspI	CTAG	2 cut(s)	1023, 1069

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.