Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004267

Physical Location & Seq

Genomic Coordinates Reverse (-)

79677434 .. 79679390

Gene Structure 1957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021976

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGCAGGAAGGTCTTGTTACAGAGATGTGCTTCCATTTACAGCCATGGTGGCTATGGAGTCCACCAACGTGGGCTTGAACACACTGTTCAAAGCTGCAACCATGAGAGGGATGAGCTACCATGTCTTTATTGTCTACTCTTATTCCATAGCTGCTATTGCTCTTCTTCCAGCTCCCTTCCTTTCCCACAGATCAAGGAGGCTTCCTCCTCTCAACTTTTCCATCATGAGCAAAATTCTTCTTCTTGGGCTAATTGGTTGGGGGCCCGGACGGTTACTTCTGAATTGTGACAACAGGGGAAGGAATTATTGGAGTACAAGACCTTCCCTACTTTTTTCGATGCTGAAGACTGAAGAGATGGAAAGTGTAGCTTTGAAAAGTAGAAGCAGTCAAGCTAAAATCTTGGGTACTATAGTTTCACTTGCAGGTGCATTTGTGGTGACTTTCTATAAGGGCCCCCGAATTTCCCTCACTAGTCAAACACAATCTCTGATGCTAAACTCAACAGCTTCAAACTCAGACTGGATCATTGGAGGCCTCCTAATAACATCTGAGTATATATTGGTGACACTTTGGTACATTGTTCAGGCACGAATTATGAAAGAGTATCCAAATGAATTAACTGTGATCTTCTTCTACAATGTTATCGTCAGCATCGTAGCTGCAGTTGTTGGTTTGATTACAGAAAAAAATCCAAATGCTTGGAGGTTGAGACCAGATATGGCATTGGTCTCCATCCTGTGCTCAGGATTACTAAGCTCATTATTGAACAATTCTGTTCACACATGGACCTTGCGCGTGAAGGGGCCTGTGTATGTGACAATGTTCAAGCCATTGTCAATTGCCATTGCTGTTGTCATGGGCGTTACGTTCCTTGGTGATACACTTTGCCTGGGAAGCCTACTTGGAGCATCGATAATATCGATTGGGTTTTATACGGTACTATGGGGAAAAGCTAAAGAAGACGCTGGTGAAGACTCCGGAGCTAATAGCCTGGAGTCACTATCTAGCAACAAGGCCCCTTTATTGCAAACCTATAAAACCGAGAATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

352

Amino Acids

38.46

Weight (kDa)

9.53

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28050 AT3G28060
fragaria_vesca	FvH4_6g50360 FvH4_6g50360 FvH4_6g50360 FvH4_6g50360 FvH4_6g50360
malus_domestica	MD09G1036900.v1.1 MD17G1038300.v1.1
prunus_persica	Prupe.3G280700_v2.0.a1 Prupe.3G280700_v2.0.a1 Prupe.3G280700_v2.0.a1
pyrus_communis	pycom111g02970 pycom17g03450
rosa_chinensis	RchiOBHm_Chr2g0170681 RchiOBHm_Chr2g0170701
rosa_laevigata	RLG00000021975 RLG00000021976
rosa_multiflora	Rmu_sc0003787.1_g000008 Rmu_sc0003787.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081110 Rroxscaffold_2G00081120
rosa_rugosa	Rorug02G0550400 Rorug02G0550500
rosa_samantha	Rh2AG623400 Rh2AG623500 Rh2BG633900 Rh2BG634000 Rh2CG603100 Rh2CG603200
rosa_wichuraiana	Rw2G051630 Rw2G051640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	416
Acc36I	ACCTGC	1 cut(s)	416
AccI	GTMKAC	1 cut(s)	135
AccII	CGCG	1 cut(s)	798
AccIII	TCCGGA	1 cut(s)	980
AclWI	GGATC	1 cut(s)	533
AcsI	RAATTY	2 cut(s)	234, 462
AcuI	CTGAAG	2 cut(s)	365, 372
AfaI	GTAC	4 cut(s)	316, 409, 578, 942
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	6 cut(s)	79, 91, 376, 513, 769, 829
AhlI	ACTAGT	1 cut(s)	473
AjnI	CCWGG	2 cut(s)	891, 993
AjuI	GAANNNNNNNTTGG	2 cut(s)	292, 324
AleI	CACNNNNGTG	1 cut(s)	68
Alw21I	GWGCWC	1 cut(s)	746
Alw26I	GTCTC	2 cut(s)	706, 736
AlwI	GGATC	1 cut(s)	533
Aor13HI	TCCGGA	1 cut(s)	980
AoxI	GGCC	5 cut(s)	263, 454, 535, 806, 1017
ApaI	GGGCCC	2 cut(s)	267, 458
ApeKI	GCWGC	3 cut(s)	95, 152, 662
ApoI	RAATTY	2 cut(s)	234, 462
AspLEI	GCGC	1 cut(s)	798
AspS9I	GGNCC	7 cut(s)	263, 264, 454, 455, 789, 806, 1018
AsuC2I	CCSGG	1 cut(s)	267
AsuHPI	GGTGA	4 cut(s)	451, 577, 890, 983
AvaII	GGWCC	1 cut(s)	789
BaeGI	GKGCMC	2 cut(s)	267, 458
BaeI	ACNNNNGTAYC	2 cut(s)	399, 432
BanII	GRGCYC	2 cut(s)	267, 458
BarI	GAAGNNNNNNTAC	2 cut(s)	307, 339
BbsI	GAAGAC	3 cut(s)	353, 969, 981
Bbv12I	GWGCWC	1 cut(s)	746
BbvI	GCAGC	3 cut(s)	82, 139, 649
BccI	CCATC	3 cut(s)	230, 352, 743
BciT130I	CCWGG	2 cut(s)	893, 995
BciVI	GTATCC	1 cut(s)	618
BcnI	CCSGG	1 cut(s)	267
BcoDI	GTCTC	2 cut(s)	706, 736
BcuI	ACTAGT	1 cut(s)	473
BfaI	CTAG	3 cut(s)	474, 1008, 1054
BfmI	CTRYAG	2 cut(s)	411, 663
BfuAI	ACCTGC	1 cut(s)	416
BfuI	GTATCC	1 cut(s)	618
BglI	GCCNNNNNGGC	1 cut(s)	50
BisI	GCNGC	3 cut(s)	96, 153, 663
BlsI	GCNGC	3 cut(s)	97, 154, 664
Bme1390I	CCNGG	3 cut(s)	267, 893, 995
Bme18I	GGWCC	1 cut(s)	789
BmgT120I	GGNCC	7 cut(s)	263, 264, 454, 455, 789, 806, 1018
BmiI	GGNNCC	6 cut(s)	264, 265, 456, 457, 807, 1020
BmrFI	CCNGG	3 cut(s)	267, 893, 995
BmsI	GCATC	4 cut(s)	330, 483, 663, 920
BpiI	GAAGAC	3 cut(s)	353, 969, 981
BplI	GAGNNNNNCTC	2 cut(s)	190, 222
BpmI	CTGGAG	1 cut(s)	1016
Bpu10I	CCTNAGC	1 cut(s)	745
BpuMI	CCSGG	1 cut(s)	267
Bsa29I	ATCGAT	2 cut(s)	914, 923
BsaI	GGTCTC	2 cut(s)	706, 736
BsaJI	CCNNGG	3 cut(s)	45, 874, 892
BsaWI	WCCGGW	1 cut(s)	980
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	527
Bse3DI	GCAATG	1 cut(s)	846
BseAI	TCCGGA	1 cut(s)	980
BseBI	CCWGG	2 cut(s)	893, 995
BseCI	ATCGAT	2 cut(s)	914, 923
BseDI	CCNNGG	3 cut(s)	45, 874, 892
BseGI	GGATG	2 cut(s)	117, 735
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	846
BseMII	CTCAG	3 cut(s)	531, 543, 759
BseNI	ACTGG	1 cut(s)	527
BseRI	GAGGAG	1 cut(s)	198
BseSI	GKGCMC	2 cut(s)	267, 458
BseXI	GCAGC	3 cut(s)	82, 139, 649
Bsh1236I	CGCG	1 cut(s)	798
BshFI	GGCC	5 cut(s)	265, 456, 537, 808, 1019
BshVI	ATCGAT	2 cut(s)	914, 923
BsiHKAI	GWGCWC	1 cut(s)	746
BsiSI	CCGG	2 cut(s)	267, 981
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	2 cut(s)	706, 736
BsnI	GGCC	5 cut(s)	265, 456, 537, 808, 1019
Bso31I	GGTCTC	2 cut(s)	706, 736
Bsp120I	GGGCCC	2 cut(s)	263, 454
Bsp1286I	GDGCHC	3 cut(s)	267, 458, 746
Bsp13I	TCCGGA	1 cut(s)	980
Bsp143I	GATC	3 cut(s)	191, 525, 627
Bsp19I	CCATGG	1 cut(s)	45
BspANI	GGCC	5 cut(s)	265, 456, 537, 808, 1019
BspCNI	CTCAG	3 cut(s)	530, 544, 758
BspDI	ATCGAT	2 cut(s)	914, 923
BspEI	TCCGGA	1 cut(s)	980
BspFNI	CGCG	1 cut(s)	798
BspHI	TCATGA	1 cut(s)	225
BspLI	GGNNCC	6 cut(s)	264, 265, 456, 457, 807, 1020
BspMAI	CTGCAG	1 cut(s)	667
BspMI	ACCTGC	1 cut(s)	416
BspPI	GGATC	1 cut(s)	533
BspQI	GCTCTTC	1 cut(s)	168
BspTNI	GGTCTC	2 cut(s)	706, 736
BsrDI	GCAATG	1 cut(s)	846
BsrI	ACTGG	1 cut(s)	527
BssECI	CCNNGG	3 cut(s)	45, 874, 892
BssMI	GATC	3 cut(s)	191, 525, 627
BssT1I	CCWWGG	2 cut(s)	45, 874
Bst2UI	CCWGG	2 cut(s)	893, 995
Bst4CI	ACNGT	4 cut(s)	87, 273, 625, 940
Bst6I	CTCTTC	2 cut(s)	168, 348
BstDEI	CTNAG	4 cut(s)	517, 552, 745, 755
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	117, 735
BstFNI	CGCG	1 cut(s)	798
BstHHI	GCGC	1 cut(s)	798
BstKTI	GATC	3 cut(s)	194, 528, 630
BstMAI	GTCTC	2 cut(s)	706, 736
BstMBI	GATC	3 cut(s)	191, 525, 627
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 158, 897
BstNI	CCWGG	2 cut(s)	893, 995
BstSCI	CCNGG	3 cut(s)	265, 891, 993
BstSFI	CTRYAG	2 cut(s)	411, 663
BstSLI	GKGCMC	2 cut(s)	267, 458
BstUI	CGCG	1 cut(s)	798
BstV1I	GCAGC	3 cut(s)	82, 139, 649
BstV2I	GAAGAC	3 cut(s)	353, 969, 981
BstXI	CCANNNNNNTGG	2 cut(s)	70, 702
Bsu15I	ATCGAT	2 cut(s)	914, 923
BsuI	GTATCC	1 cut(s)	618
BsuRI	GGCC	5 cut(s)	265, 456, 537, 808, 1019
BsuTUI	ATCGAT	2 cut(s)	914, 923
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	117, 735
BtsIMutI	CAGTG	1 cut(s)	83
BveI	ACCTGC	1 cut(s)	416
CciI	TCATGA	1 cut(s)	225
CfoI	GCGC	1 cut(s)	798
Cfr13I	GGNCC	7 cut(s)	263, 264, 454, 455, 789, 806, 1018
ClaI	ATCGAT	2 cut(s)	914, 923
CseI	GACGC	1 cut(s)	974
Csp6I	GTAC	4 cut(s)	315, 408, 577, 941
CviAII	CATG	6 cut(s)	46, 103, 122, 226, 786, 859
CviQI	GTAC	4 cut(s)	315, 408, 577, 941
DdeI	CTNAG	4 cut(s)	517, 552, 745, 755
DpnI	GATC	3 cut(s)	193, 527, 629
DpnII	GATC	3 cut(s)	191, 525, 627
Eam1104I	CTCTTC	2 cut(s)	168, 348
EarI	CTCTTC	2 cut(s)	168, 348
Eco130I	CCWWGG	2 cut(s)	45, 874
Eco147I	AGGCCT	1 cut(s)	537
Eco24I	GRGCYC	2 cut(s)	267, 458
Eco31I	GGTCTC	2 cut(s)	706, 736
Eco47I	GGWCC	1 cut(s)	789
Eco57I	CTGAAG	2 cut(s)	365, 372
EcoO109I	RGGNCCY	5 cut(s)	263, 454, 455, 806, 1018
EcoRII	CCWGG	2 cut(s)	891, 993
EcoT14I	CCWWGG	2 cut(s)	45, 874
EcoT38I	GRGCYC	2 cut(s)	267, 458
ErhI	CCWWGG	2 cut(s)	45, 874
FaeI	CATG	6 cut(s)	49, 106, 125, 229, 789, 862
FalI	AAGNNNNNCTT	2 cut(s)	355, 387
FatI	CATG	6 cut(s)	45, 102, 121, 225, 785, 858
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	96, 153, 663
FokI	GGATG	2 cut(s)	124, 722
FriOI	GRGCYC	2 cut(s)	267, 458
Fsp4HI	GCNGC	3 cut(s)	96, 153, 663
FspBI	CTAG	3 cut(s)	474, 1008, 1054
GlaI	GCGC	1 cut(s)	797
GluI	GCNGC	3 cut(s)	96, 153, 663
GsuI	CTGGAG	1 cut(s)	1016
HaeIII	GGCC	5 cut(s)	265, 456, 537, 808, 1019
HapII	CCGG	2 cut(s)	267, 981
HgaI	GACGC	1 cut(s)	974
HhaI	GCGC	1 cut(s)	798
Hin1II	CATG	6 cut(s)	49, 106, 125, 229, 789, 862
Hin6I	GCGC	1 cut(s)	796
HinP1I	GCGC	1 cut(s)	796
HinfI	GANTC	3 cut(s)	59, 977, 998
HpaII	CCGG	2 cut(s)	267, 981
HphI	GGTGA	4 cut(s)	451, 577, 890, 983
Hpy166II	GTNNAC	3 cut(s)	63, 136, 781
Hpy188I	TCNGA	4 cut(s)	282, 492, 520, 553
Hpy188III	TCNNGA	3 cut(s)	226, 747, 981
Hpy8I	GTNNAC	3 cut(s)	63, 136, 781
HpyAV	CCTTC	5 cut(s)	3, 187, 294, 333, 796
HpyCH4III	ACNGT	4 cut(s)	87, 273, 625, 940
HpyCH4IV	ACGT	2 cut(s)	69, 869
HpyCH4V	TGCA	5 cut(s)	98, 425, 431, 665, 1030
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 158, 897
HpyF3I	CTNAG	4 cut(s)	517, 552, 745, 755
HpySE526I	ACGT	2 cut(s)	69, 869
Hsp92II	CATG	6 cut(s)	49, 106, 125, 229, 789, 862
HspAI	GCGC	1 cut(s)	796
Kpn2I	TCCGGA	1 cut(s)	980
Kzo9I	GATC	3 cut(s)	191, 525, 627
LguI	GCTCTTC	1 cut(s)	168
LmnI	GCTCC	3 cut(s)	178, 908, 983
Lsp1109I	GCAGC	3 cut(s)	82, 139, 649
LweI	GCATC	4 cut(s)	330, 483, 663, 920
MaeI	CTAG	3 cut(s)	474, 1008, 1054
MaeII	ACGT	2 cut(s)	69, 869
MaeIII	GTNAC	8 cut(s)	17, 273, 287, 439, 565, 817, 865, 999
MalI	GATC	3 cut(s)	193, 527, 629
MboI	GATC	3 cut(s)	191, 525, 627
MfeI	CAATTG	1 cut(s)	840
MhlI	GDGCHC	3 cut(s)	267, 458, 746
MluCI	AATT	9 cut(s)	234, 252, 283, 304, 462, 594, 617, 772, 840
MlyI	GAGTC	3 cut(s)	68, 971, 1007
MnlI	CCTC	8 cut(s)	101, 192, 216, 219, 479, 527, 548, 699
MroI	TCCGGA	1 cut(s)	980
MseI	TTAA	1 cut(s)	620
MslI	CAYNNNNRTG	1 cut(s)	68
MspI	CCGG	2 cut(s)	267, 981
MspR9I	CCNGG	3 cut(s)	267, 893, 995
MunI	CAATTG	1 cut(s)	840
MvaI	CCWGG	2 cut(s)	893, 995
MvnI	CGCG	1 cut(s)	798
MwoI	GCNNNNNNNGC	3 cut(s)	50, 158, 897
NciI	CCSGG	1 cut(s)	267
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	3 cut(s)	191, 525, 627
NlaIII	CATG	6 cut(s)	49, 106, 125, 229, 789, 862
NlaIV	GGNNCC	6 cut(s)	264, 265, 456, 457, 807, 1020
NmuCI	GTSAC	5 cut(s)	287, 439, 565, 817, 999
OliI	CACNNNNGTG	1 cut(s)	68
PagI	TCATGA	1 cut(s)	225
PaqCI	CACCTGC	1 cut(s)	416
PceI	AGGCCT	1 cut(s)	537
PciSI	GCTCTTC	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	2 cut(s)	654, 920
PkrI	GCNGC	3 cut(s)	97, 154, 664
PleI	GAGTC	3 cut(s)	67, 971, 1006
PpsI	GAGTC	3 cut(s)	67, 971, 1006
Psp6I	CCWGG	2 cut(s)	891, 993
PspGI	CCWGG	2 cut(s)	891, 993
PspN4I	GGNNCC	6 cut(s)	264, 265, 456, 457, 807, 1020
PspOMI	GGGCCC	2 cut(s)	263, 454
PspPI	GGNCC	7 cut(s)	263, 264, 454, 455, 789, 806, 1018
PstI	CTGCAG	1 cut(s)	667
RsaI	GTAC	4 cut(s)	316, 409, 578, 942
RsaNI	GTAC	4 cut(s)	315, 408, 577, 941
RseI	CAYNNNNRTG	1 cut(s)	68
SapI	GCTCTTC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	620
SatI	GCNGC	3 cut(s)	96, 153, 663
Sau3AI	GATC	3 cut(s)	191, 525, 627
Sau96I	GGNCC	7 cut(s)	263, 264, 454, 455, 789, 806, 1018
SchI	GAGTC	3 cut(s)	68, 971, 1007
ScrFI	CCNGG	3 cut(s)	267, 893, 995
SduI	GDGCHC	3 cut(s)	267, 458, 746
SfaNI	GCATC	4 cut(s)	330, 483, 663, 920
SfcI	CTRYAG	2 cut(s)	411, 663
SinI	GGWCC	1 cut(s)	789
SmiMI	CAYNNNNRTG	1 cut(s)	68
SpeI	ACTAGT	1 cut(s)	473
Sse9I	AATT	9 cut(s)	234, 252, 283, 304, 462, 594, 617, 772, 840
SseBI	AGGCCT	1 cut(s)	537
SspMI	CTAG	3 cut(s)	474, 1008, 1054
StuI	AGGCCT	1 cut(s)	537
StyD4I	CCNGG	3 cut(s)	265, 891, 993
StyI	CCWWGG	2 cut(s)	45, 874
TaaI	ACNGT	4 cut(s)	87, 273, 625, 940
TaiI	ACGT	2 cut(s)	72, 872
TaqI	TCGA	3 cut(s)	338, 914, 923
TasI	AATT	9 cut(s)	234, 252, 283, 304, 462, 594, 617, 772, 840
TatI	WGTACW	1 cut(s)	314
Tru1I	TTAA	1 cut(s)	620
Tru9I	TTAA	1 cut(s)	620
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	5 cut(s)	287, 439, 565, 817, 999
TseI	GCWGC	3 cut(s)	95, 152, 662
Tsp45I	GTSAC	5 cut(s)	287, 439, 565, 817, 999
TspDTI	ATGAA	2 cut(s)	614, 630
TspRI	CASTG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	789
XapI	RAATTY	2 cut(s)	234, 462
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	3 cut(s)	474, 1008, 1054

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.