Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004267

Physical Location & Seq

Genomic Coordinates Reverse (-)

67770226 .. 67770489

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0550400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGAAGCAATTACAGAATTGGATGAAGCAAGTCTAAGAGGCCAAGCAGAAGTATGGAAGTACATGCTCGTCTTTGCAGATTTTATGGCTTTGAAATCTGCTGTGGAGCTCCGCGTACCAGATATCATACACTTTCATGGCCATGCATTGACTTTGTTTGAGATAGTCTCATCCATCGATTCTGCATCACCCTCTCCAGACATCACTTGCCTCTCTCGCATCATGCGGTTGCTGGTCTGCAGGAACATCTTCACCACATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

87

Amino Acids

9.77

Weight (kDa)

5.15

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	19 - 86	7e-13	O-methyltransferase dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28050 AT3G28060
fragaria_vesca	FvH4_6g50360 FvH4_6g50360 FvH4_6g50360 FvH4_6g50360 FvH4_6g50360
malus_domestica	MD09G1036900.v1.1 MD17G1038300.v1.1
prunus_persica	Prupe.3G280700_v2.0.a1 Prupe.3G280700_v2.0.a1 Prupe.3G280700_v2.0.a1
pyrus_communis	pycom111g02970 pycom17g03450
rosa_chinensis	RchiOBHm_Chr2g0170681 RchiOBHm_Chr2g0170701
rosa_laevigata	RLG00000021975 RLG00000021976
rosa_multiflora	Rmu_sc0003787.1_g000008 Rmu_sc0003787.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081110 Rroxscaffold_2G00081120
rosa_rugosa	Rorug02G0550400 Rorug02G0550500
rosa_samantha	Rh2AG623400 Rh2AG623500 Rh2BG633900 Rh2BG634000 Rh2CG603100 Rh2CG603200
rosa_wichuraiana	Rw2G051630 Rw2G051640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	114
AciI	CCGC	2 cut(s)	112, 226
AcoI	YGGCCR	1 cut(s)	139
AfaI	GTAC	2 cut(s)	62, 117
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	172
AoxI	GGCC	2 cut(s)	40, 139
Asp700I	GAANNNNTTC	1 cut(s)	248
AsuHPI	GGTGA	2 cut(s)	180, 244
BalI	TGGCCA	1 cut(s)	141
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	111
BccI	CCATC	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	172
BfmI	CTRYAG	1 cut(s)	238
BmsI	GCATC	2 cut(s)	194, 228
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BpmI	CTGGAG	1 cut(s)	180
Bsa29I	ATCGAT	1 cut(s)	177
BseCI	ATCGAT	1 cut(s)	177
BseGI	GGATG	2 cut(s)	28, 170
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	2 cut(s)	42, 141
BshVI	ATCGAT	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	111
BsmAI	GTCTC	1 cut(s)	172
BsnI	GGCC	2 cut(s)	42, 141
Bsp1286I	GDGCHC	1 cut(s)	111
BspACI	CCGC	2 cut(s)	112, 226
BspANI	GGCC	2 cut(s)	42, 141
BspDI	ATCGAT	1 cut(s)	177
BspFNI	CGCG	1 cut(s)	114
BspHI	TCATGA	1 cut(s)	260
BspMAI	CTGCAG	1 cut(s)	242
BstDEI	CTNAG	1 cut(s)	35
BstF5I	GGATG	2 cut(s)	28, 170
BstFNI	CGCG	1 cut(s)	114
BstMAI	GTCTC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	1 cut(s)	216
BstNSI	RCATGY	1 cut(s)	67
BstSFI	CTRYAG	1 cut(s)	238
BstUI	CGCG	1 cut(s)	114
Bsu15I	ATCGAT	1 cut(s)	177
BsuRI	GGCC	2 cut(s)	42, 141
BsuTUI	ATCGAT	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	28, 170
CciI	TCATGA	1 cut(s)	260
ClaI	ATCGAT	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	61, 116
CviAII	CATG	5 cut(s)	64, 137, 143, 223, 261
CviJI	RGCY	4 cut(s)	42, 89, 109, 141
CviKI_1	RGCY	4 cut(s)	42, 89, 109, 141
CviQI	GTAC	2 cut(s)	61, 116
DdeI	CTNAG	1 cut(s)	35
EaeI	YGGCCR	1 cut(s)	139
Ecl136II	GAGCTC	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	111
Eco32I	GATATC	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	109
EcoICRI	GAGCTC	1 cut(s)	109
EcoRV	GATATC	1 cut(s)	124
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	111
FaeI	CATG	5 cut(s)	67, 140, 146, 226, 264
FaiI	YATR	8 cut(s)	55, 65, 86, 128, 138, 144, 224, 262
FatI	CATG	5 cut(s)	63, 136, 142, 222, 260
FokI	GGATG	2 cut(s)	35, 157
FriOI	GRGCYC	1 cut(s)	111
GsuI	CTGGAG	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	42, 141
Hin1II	CATG	5 cut(s)	67, 140, 146, 226, 264
HinfI	GANTC	1 cut(s)	179
HphI	GGTGA	2 cut(s)	180, 244
Hpy188III	TCNNGA	2 cut(s)	197, 261
HpyCH4V	TGCA	4 cut(s)	77, 146, 185, 240
HpyF10VI	GCNNNNNNNGC	1 cut(s)	216
HpyF3I	CTNAG	1 cut(s)	35
Hsp92II	CATG	5 cut(s)	67, 140, 146, 226, 264
LmnI	GCTCC	2 cut(s)	106, 114
LpnPI	CCDG	4 cut(s)	132, 210, 218, 226
LweI	GCATC	2 cut(s)	194, 228
MboII	GAAGA	1 cut(s)	241
MhlI	GDGCHC	1 cut(s)	111
MlsI	TGGCCA	1 cut(s)	141
MluCI	AATT	2 cut(s)	9, 17
MluNI	TGGCCA	1 cut(s)	141
MnlI	CCTC	3 cut(s)	32, 202, 221
Mox20I	TGGCCA	1 cut(s)	141
Mph1103I	ATGCAT	1 cut(s)	148
MroXI	GAANNNNTTC	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	141
MslI	CAYNNNNRTG	2 cut(s)	135, 141
Msp20I	TGGCCA	1 cut(s)	141
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	216
NlaIII	CATG	5 cut(s)	67, 140, 146, 226, 264
NsiI	ATGCAT	1 cut(s)	148
NspI	RCATGY	1 cut(s)	67
PagI	TCATGA	1 cut(s)	260
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	179
Psp124BI	GAGCTC	1 cut(s)	111
PstI	CTGCAG	1 cut(s)	242
RsaI	GTAC	2 cut(s)	62, 117
RsaNI	GTAC	2 cut(s)	61, 116
RseI	CAYNNNNRTG	2 cut(s)	135, 141
SacI	GAGCTC	1 cut(s)	111
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	1 cut(s)	111
SfaNI	GCATC	2 cut(s)	194, 228
SfcI	CTRYAG	1 cut(s)	238
SmiMI	CAYNNNNRTG	2 cut(s)	135, 141
Sse9I	AATT	2 cut(s)	9, 17
SsiI	CCGC	2 cut(s)	112, 226
SstI	GAGCTC	1 cut(s)	111
TaqI	TCGA	1 cut(s)	177
TasI	AATT	2 cut(s)	9, 17
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	179
TspDTI	ATGAA	2 cut(s)	39, 125
XceI	RCATGY	1 cut(s)	67
XmnI	GAANNNNTTC	1 cut(s)	248
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.