Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004267

Physical Location & Seq

Genomic Coordinates Forward (+)

4104750 .. 4107459

Gene Structure 2710 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00081110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCAGGAAGGTCTTGTTACAGAGATGTGCTTCCATTTACAGCCATGGTGGCTATGGAGTCCACCAACGTGGGATTGAACACACTGTTCAAAGCTGCAACCATGAGAGGGATGAGCTACCATGTCTTTATTGTCTACTCTTATTCCATAGCTGCTCTTGCTCTTCTTCCAGCTCCCTTCATTTCCCACAGATCAAGGAGGCTTCCTCCTCTCAACTTTTCCATCATGAGCAAAATTCTTCTTCTTGGGCTAATTGGTTACAGCTCTCCAACGCTTGCTTCTGCTATCAGCAACCTTGTGCCAGCTTTCACTTTCATTCTTGCCATTATTTTCAGGATGGAAAGTGTAGCTTTGAAAAGTAGAAGCAGTCAAGCTAAAATCTTGGGTACTATAGTTTCACTTGCAGACTGGATCATTGGAGGCCTTCTAATAACAGCTGAGTATATATTGGTGACACTTTGGTACATTGTTCAGGCACGAATTATGAAAGAGTATCCAAATGAATTAACTGTGATCTTCTTCTACAATGTTATCGTCAGCATCGTAGCTGCAGTTGTTGGTTTGATTACAGAAAAAAATCCAAATGCTTGGAGGTTGAGACCAGATATGGCATTGGTCTCCATCCTGAGCTCAGGATTACTAAGCTCATTATTGAACAATTCTGTTCACACATGGACCTTGCGCGTGAAGGGGGGGCCTGTGTATGTGACAATGTTCAAGCCATTGTCAATTGCCATTGCTGTTGTCATGGGCGTTACGTTCCTTGGTGATACACTTTGCCTGGGAAGCCTACTTGGAGCATCGATAATATCGATTGGGTTTTATACGGTACTATGGGGAAAAGCTAAAGAAGACGCTGGTGAAGACTCCGGAGCTAATAGCCTGGAGTCACCATCTAGCAGCAAGGCCCCTTTATTGCAAACCTATAAAACCGAGAATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

314

Amino Acids

34.06

Weight (kDa)

9.47

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28050 AT3G28060
fragaria_vesca	FvH4_6g50360 FvH4_6g50360 FvH4_6g50360 FvH4_6g50360 FvH4_6g50360
malus_domestica	MD09G1036900.v1.1 MD17G1038300.v1.1
prunus_persica	Prupe.3G280700_v2.0.a1 Prupe.3G280700_v2.0.a1 Prupe.3G280700_v2.0.a1
pyrus_communis	pycom111g02970 pycom17g03450
rosa_chinensis	RchiOBHm_Chr2g0170681 RchiOBHm_Chr2g0170701
rosa_laevigata	RLG00000021975 RLG00000021976
rosa_multiflora	Rmu_sc0003787.1_g000008 Rmu_sc0003787.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081110 Rroxscaffold_2G00081120
rosa_rugosa	Rorug02G0550400 Rorug02G0550500
rosa_samantha	Rh2AG623400 Rh2AG623500 Rh2BG633900 Rh2BG634000 Rh2CG603100 Rh2CG603200
rosa_wichuraiana	Rw2G051630 Rw2G051640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	135
AccII	CGCG	1 cut(s)	684
AccIII	TCCGGA	1 cut(s)	869
AclWI	GGATC	1 cut(s)	419
AcsI	RAATTY	1 cut(s)	234
AfaI	GTAC	3 cut(s)	388, 464, 831
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	5 cut(s)	79, 91, 355, 655, 718
AjnI	CCWGG	2 cut(s)	780, 882
AjuI	GAANNNNNNNTTGG	2 cut(s)	262, 294
AleI	CACNNNNGTG	1 cut(s)	68
Alw21I	GWGCWC	1 cut(s)	632
Alw26I	GTCTC	2 cut(s)	592, 622
AlwI	GGATC	1 cut(s)	419
Aor13HI	TCCGGA	1 cut(s)	869
AoxI	GGCC	3 cut(s)	421, 695, 906
ApeKI	GCWGC	4 cut(s)	95, 152, 548, 900
ApoI	RAATTY	1 cut(s)	234
AspLEI	GCGC	1 cut(s)	684
AspS9I	GGNCC	3 cut(s)	675, 695, 907
AsuHPI	GGTGA	4 cut(s)	463, 779, 872, 882
AvaII	GGWCC	1 cut(s)	675
BaeI	ACNNNNGTAYC	2 cut(s)	378, 411
BanII	GRGCYC	1 cut(s)	632
BbsI	GAAGAC	2 cut(s)	858, 870
Bbv12I	GWGCWC	1 cut(s)	632
BbvI	GCAGC	4 cut(s)	82, 139, 535, 912
BccI	CCATC	4 cut(s)	230, 331, 629, 901
BciT130I	CCWGG	2 cut(s)	782, 884
BciVI	GTATCC	1 cut(s)	504
BcoDI	GTCTC	2 cut(s)	592, 622
BfaI	CTAG	2 cut(s)	897, 943
BfmI	CTRYAG	2 cut(s)	390, 549
BfuI	GTATCC	1 cut(s)	504
BglI	GCCNNNNNGGC	1 cut(s)	50
BisI	GCNGC	4 cut(s)	96, 153, 549, 901
BlsI	GCNGC	4 cut(s)	97, 154, 550, 902
Bme1390I	CCNGG	2 cut(s)	782, 884
Bme18I	GGWCC	1 cut(s)	675
BmgT120I	GGNCC	3 cut(s)	675, 695, 907
BmiI	GGNNCC	2 cut(s)	696, 909
BmrFI	CCNGG	2 cut(s)	782, 884
BmsI	GCATC	2 cut(s)	549, 809
BpiI	GAAGAC	2 cut(s)	858, 870
BplI	GAGNNNNNCTC	2 cut(s)	190, 222
BpmI	CTGGAG	1 cut(s)	905
Bpu10I	CCTNAGC	2 cut(s)	626, 631
Bsa29I	ATCGAT	2 cut(s)	803, 812
BsaI	GGTCTC	2 cut(s)	592, 622
BsaJI	CCNNGG	3 cut(s)	45, 763, 781
BsaWI	WCCGGW	1 cut(s)	869
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	413
Bse3DI	GCAATG	1 cut(s)	735
BseAI	TCCGGA	1 cut(s)	869
BseBI	CCWGG	2 cut(s)	782, 884
BseCI	ATCGAT	2 cut(s)	803, 812
BseDI	CCNNGG	3 cut(s)	45, 763, 781
BseGI	GGATG	3 cut(s)	117, 342, 621
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	735
BseMII	CTCAG	3 cut(s)	429, 617, 645
BseNI	ACTGG	1 cut(s)	413
BseRI	GAGGAG	1 cut(s)	198
BseXI	GCAGC	4 cut(s)	82, 139, 535, 912
Bsh1236I	CGCG	1 cut(s)	684
BshFI	GGCC	3 cut(s)	423, 697, 908
BshVI	ATCGAT	2 cut(s)	803, 812
BsiHKAI	GWGCWC	1 cut(s)	632
BsiSI	CCGG	1 cut(s)	870
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	2 cut(s)	592, 622
BsnI	GGCC	3 cut(s)	423, 697, 908
Bso31I	GGTCTC	2 cut(s)	592, 622
Bsp1286I	GDGCHC	1 cut(s)	632
Bsp13I	TCCGGA	1 cut(s)	869
Bsp143I	GATC	3 cut(s)	191, 411, 513
Bsp19I	CCATGG	1 cut(s)	45
BspANI	GGCC	3 cut(s)	423, 697, 908
BspCNI	CTCAG	3 cut(s)	430, 618, 644
BspDI	ATCGAT	2 cut(s)	803, 812
BspEI	TCCGGA	1 cut(s)	869
BspFNI	CGCG	1 cut(s)	684
BspHI	TCATGA	1 cut(s)	225
BspLI	GGNNCC	2 cut(s)	696, 909
BspMAI	CTGCAG	1 cut(s)	553
BspPI	GGATC	1 cut(s)	419
BspQI	GCTCTTC	1 cut(s)	168
BspTNI	GGTCTC	2 cut(s)	592, 622
BsrDI	GCAATG	1 cut(s)	735
BsrI	ACTGG	1 cut(s)	413
BssECI	CCNNGG	3 cut(s)	45, 763, 781
BssMI	GATC	3 cut(s)	191, 411, 513
BssT1I	CCWWGG	2 cut(s)	45, 763
Bst2UI	CCWGG	2 cut(s)	782, 884
Bst4CI	ACNGT	3 cut(s)	87, 511, 829
Bst6I	CTCTTC	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	276, 303
BstDEI	CTNAG	4 cut(s)	438, 626, 631, 641
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	3 cut(s)	117, 342, 621
BstFNI	CGCG	1 cut(s)	684
BstHHI	GCGC	1 cut(s)	684
BstKTI	GATC	3 cut(s)	194, 414, 516
BstMAI	GTCTC	2 cut(s)	592, 622
BstMBI	GATC	3 cut(s)	191, 411, 513
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 158, 786
BstNI	CCWGG	2 cut(s)	782, 884
BstSCI	CCNGG	2 cut(s)	780, 882
BstSFI	CTRYAG	2 cut(s)	390, 549
BstUI	CGCG	1 cut(s)	684
BstV1I	GCAGC	4 cut(s)	82, 139, 535, 912
BstV2I	GAAGAC	2 cut(s)	858, 870
BstXI	CCANNNNNNTGG	2 cut(s)	70, 588
Bsu15I	ATCGAT	2 cut(s)	803, 812
BsuI	GTATCC	1 cut(s)	504
BsuRI	GGCC	3 cut(s)	423, 697, 908
BsuTUI	ATCGAT	2 cut(s)	803, 812
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	3 cut(s)	117, 342, 621
BtsIMutI	CAGTG	1 cut(s)	83
Cac8I	GCNNGC	2 cut(s)	276, 303
CciI	TCATGA	1 cut(s)	225
CfoI	GCGC	1 cut(s)	684
Cfr13I	GGNCC	3 cut(s)	675, 695, 907
ClaI	ATCGAT	2 cut(s)	803, 812
CseI	GACGC	1 cut(s)	863
Csp6I	GTAC	3 cut(s)	387, 463, 830
CviAII	CATG	6 cut(s)	46, 103, 122, 226, 672, 748
CviQI	GTAC	3 cut(s)	387, 463, 830
DdeI	CTNAG	4 cut(s)	438, 626, 631, 641
DpnI	GATC	3 cut(s)	193, 413, 515
DpnII	GATC	3 cut(s)	191, 411, 513
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Ecl136II	GAGCTC	1 cut(s)	630
Eco130I	CCWWGG	2 cut(s)	45, 763
Eco147I	AGGCCT	1 cut(s)	423
Eco24I	GRGCYC	1 cut(s)	632
Eco31I	GGTCTC	2 cut(s)	592, 622
Eco47I	GGWCC	1 cut(s)	675
Eco53kI	GAGCTC	1 cut(s)	630
EcoICRI	GAGCTC	1 cut(s)	630
EcoO109I	RGGNCCY	2 cut(s)	695, 907
EcoRII	CCWGG	2 cut(s)	780, 882
EcoT14I	CCWWGG	2 cut(s)	45, 763
EcoT38I	GRGCYC	1 cut(s)	632
ErhI	CCWWGG	2 cut(s)	45, 763
FaeI	CATG	6 cut(s)	49, 106, 125, 229, 675, 751
FalI	AAGNNNNNCTT	2 cut(s)	334, 366
FatI	CATG	6 cut(s)	45, 102, 121, 225, 671, 747
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	4 cut(s)	96, 153, 549, 901
FokI	GGATG	3 cut(s)	124, 349, 608
FriOI	GRGCYC	1 cut(s)	632
Fsp4HI	GCNGC	4 cut(s)	96, 153, 549, 901
FspBI	CTAG	2 cut(s)	897, 943
GlaI	GCGC	1 cut(s)	683
GluI	GCNGC	4 cut(s)	96, 153, 549, 901
GsuI	CTGGAG	1 cut(s)	905
HaeIII	GGCC	3 cut(s)	423, 697, 908
HapII	CCGG	1 cut(s)	870
HgaI	GACGC	1 cut(s)	863
HhaI	GCGC	1 cut(s)	684
Hin1II	CATG	6 cut(s)	49, 106, 125, 229, 675, 751
Hin6I	GCGC	1 cut(s)	682
HinP1I	GCGC	1 cut(s)	682
HinfI	GANTC	3 cut(s)	59, 866, 887
HpaII	CCGG	1 cut(s)	870
HphI	GGTGA	4 cut(s)	463, 779, 872, 882
Hpy166II	GTNNAC	3 cut(s)	63, 136, 667
Hpy188III	TCNNGA	5 cut(s)	226, 334, 625, 633, 870
Hpy8I	GTNNAC	3 cut(s)	63, 136, 667
HpyAV	CCTTC	4 cut(s)	3, 187, 434, 682
HpyCH4III	ACNGT	3 cut(s)	87, 511, 829
HpyCH4IV	ACGT	2 cut(s)	69, 758
HpyCH4V	TGCA	4 cut(s)	98, 404, 551, 919
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 158, 786
HpyF3I	CTNAG	4 cut(s)	438, 626, 631, 641
HpySE526I	ACGT	2 cut(s)	69, 758
Hsp92II	CATG	6 cut(s)	49, 106, 125, 229, 675, 751
HspAI	GCGC	1 cut(s)	682
Kpn2I	TCCGGA	1 cut(s)	869
Kzo9I	GATC	3 cut(s)	191, 411, 513
LguI	GCTCTTC	1 cut(s)	168
LmnI	GCTCC	3 cut(s)	178, 797, 872
Lsp1109I	GCAGC	4 cut(s)	82, 139, 535, 912
LweI	GCATC	2 cut(s)	549, 809
MaeI	CTAG	2 cut(s)	897, 943
MaeII	ACGT	2 cut(s)	69, 758
MaeIII	GTNAC	6 cut(s)	17, 257, 451, 706, 754, 888
MalI	GATC	3 cut(s)	193, 413, 515
MboI	GATC	3 cut(s)	191, 411, 513
MboII	GAAGA	8 cut(s)	155, 158, 230, 233, 508, 511, 863, 875
MfeI	CAATTG	1 cut(s)	729
MhlI	GDGCHC	1 cut(s)	632
MluCI	AATT	6 cut(s)	234, 252, 480, 503, 658, 729
MlyI	GAGTC	3 cut(s)	68, 860, 896
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	6 cut(s)	101, 192, 216, 219, 413, 585
MroI	TCCGGA	1 cut(s)	869
MseI	TTAA	1 cut(s)	506
MslI	CAYNNNNRTG	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	437
MspI	CCGG	1 cut(s)	870
MspR9I	CCNGG	2 cut(s)	782, 884
MunI	CAATTG	1 cut(s)	729
MvaI	CCWGG	2 cut(s)	782, 884
MvnI	CGCG	1 cut(s)	684
MwoI	GCNNNNNNNGC	3 cut(s)	50, 158, 786
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	3 cut(s)	191, 411, 513
NlaIII	CATG	6 cut(s)	49, 106, 125, 229, 675, 751
NlaIV	GGNNCC	2 cut(s)	696, 909
NmuCI	GTSAC	3 cut(s)	451, 706, 888
OliI	CACNNNNGTG	1 cut(s)	68
PagI	TCATGA	1 cut(s)	225
PceI	AGGCCT	1 cut(s)	423
PciSI	GCTCTTC	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	2 cut(s)	540, 809
PkrI	GCNGC	4 cut(s)	97, 154, 550, 902
PleI	GAGTC	3 cut(s)	67, 860, 895
PpsI	GAGTC	3 cut(s)	67, 860, 895
Psp124BI	GAGCTC	1 cut(s)	632
Psp6I	CCWGG	2 cut(s)	780, 882
PspGI	CCWGG	2 cut(s)	780, 882
PspN4I	GGNNCC	2 cut(s)	696, 909
PspPI	GGNCC	3 cut(s)	675, 695, 907
PstI	CTGCAG	1 cut(s)	553
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	3 cut(s)	388, 464, 831
RsaNI	GTAC	3 cut(s)	387, 463, 830
RseI	CAYNNNNRTG	1 cut(s)	68
SacI	GAGCTC	1 cut(s)	632
SapI	GCTCTTC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	506
SatI	GCNGC	4 cut(s)	96, 153, 549, 901
Sau3AI	GATC	3 cut(s)	191, 411, 513
Sau96I	GGNCC	3 cut(s)	675, 695, 907
SchI	GAGTC	3 cut(s)	68, 860, 896
ScrFI	CCNGG	2 cut(s)	782, 884
SduI	GDGCHC	1 cut(s)	632
SfaNI	GCATC	2 cut(s)	549, 809
SfcI	CTRYAG	2 cut(s)	390, 549
SinI	GGWCC	1 cut(s)	675
SmiMI	CAYNNNNRTG	1 cut(s)	68
Sse9I	AATT	6 cut(s)	234, 252, 480, 503, 658, 729
SseBI	AGGCCT	1 cut(s)	423
SspMI	CTAG	2 cut(s)	897, 943
SstI	GAGCTC	1 cut(s)	632
StuI	AGGCCT	1 cut(s)	423
StyD4I	CCNGG	2 cut(s)	780, 882
StyI	CCWWGG	2 cut(s)	45, 763
TaaI	ACNGT	3 cut(s)	87, 511, 829
TaiI	ACGT	2 cut(s)	72, 761
TaqI	TCGA	2 cut(s)	803, 812
TasI	AATT	6 cut(s)	234, 252, 480, 503, 658, 729
Tru1I	TTAA	1 cut(s)	506
Tru9I	TTAA	1 cut(s)	506
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	3 cut(s)	451, 706, 888
TseI	GCWGC	4 cut(s)	95, 152, 548, 900
Tsp45I	GTSAC	3 cut(s)	451, 706, 888
TspDTI	ATGAA	4 cut(s)	169, 304, 500, 516
TspRI	CASTG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	675
XapI	RAATTY	1 cut(s)	234
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	2 cut(s)	897, 943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.