Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004267

Physical Location & Seq

Genomic Coordinates Forward (+)

2280037 .. 2283737

Gene Structure 3701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g03450.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCAGCAGCAGGGAGGTCTTGTTACAGAGATGTGCTGCCGTTCACGGCGATGGTGACGATGGAGTGCATGAACGTCGGCCTAAACACTCTCTTCAAAGCTGCCACTCTAAATGGAATGAGCTACCATGTCTTTGTTGTCTACTCTTACTCAGTTGCTGCCTTTGTTCTCATCCCAGCTCCTTTCGTCTCCCGCACATCAAGGGTGCTTCCTCCTCTCAACTTCTCCATCATGTCCAAAATTCTTCTTCTTGGACTCATAGGGAGTTCATCACAGATCATGGGGTACACAGGAATCAACTACAGCTCTCCAACACTTGCTTCAGCCATCAGCAACCTTGTGCCAGCTTTCACTTTTATCCTTGCCATCATTGTCAGGCTGGAAAGTACAGGTTTGAGAAGCAGATGCAGTCAAGCAAAAATCTTGGGTACAATAGTTTCACTTGCAGGTGCATTTGTGGTGACTCTCTACAAGGGCCCTCCTATTGTGTTTGCTAATCAATCACAATCTATTTCACTTCACCAACCTCTCCTAAACTCCCCACCACCAACAAACTCAAATTGGATAATTGGTGGCCTTCTGCTAACGGCTGAGTACATATTGGTACCACTTTGGTACATTGTTCAGGCACAAATCATGAAAGATTACCCGAATGAATTAAACGTCATCTTCTTCTACAATGTCTGCGTGGTCGCCGTTTCTGCGGCTGTTGCTTTGATTACAGAACCAAATTCCAGCGCTTGGAAGTTGAGACCTGATATTGCATTGCTTTCCATTCTCTGCTCAGGGCTATTTGGGTCGTTTTTGAACAATGCTGTTCACACATGGGTGCTGCGCTTGAAGGGACCTGTCTATGTGACAATGTTCAAGCCTTTGTCCATGGCCATTGCCGTGGTCTTGGGCGTTGTGTTCCTTCATGACACTCTTCATCTTGGAAGCCTAGTTGGAGCAACAATTATATCTTTTGGGTTTTATACTGTACTGTGGGGGAAAACAAAGGAACAGGTCGGTGAAGAACCTGTAGCTACTAGCCTGGAATCCCCATCTACCACCCACAAGGCCCCTTTATTGCAAAACTATAAAAACGAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

365

Amino Acids

39.45

Weight (kDa)

9.22

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28050 AT3G28060
fragaria_vesca	FvH4_6g50360 FvH4_6g50360 FvH4_6g50360 FvH4_6g50360 FvH4_6g50360
malus_domestica	MD09G1036900.v1.1 MD17G1038300.v1.1
prunus_persica	Prupe.3G280700_v2.0.a1 Prupe.3G280700_v2.0.a1 Prupe.3G280700_v2.0.a1
pyrus_communis	pycom111g02970 pycom17g03450
rosa_chinensis	RchiOBHm_Chr2g0170681 RchiOBHm_Chr2g0170701
rosa_laevigata	RLG00000021975 RLG00000021976
rosa_multiflora	Rmu_sc0003787.1_g000008 Rmu_sc0003787.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081110 Rroxscaffold_2G00081120
rosa_rugosa	Rorug02G0550400 Rorug02G0550500
rosa_samantha	Rh2AG623400 Rh2AG623500 Rh2BG633900 Rh2BG634000 Rh2CG603100 Rh2CG603200
rosa_wichuraiana	Rw2G051630 Rw2G051640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	437
Acc36I	ACCTGC	1 cut(s)	437
Acc65I	GGTACC	1 cut(s)	604
AccB1I	GGYRCC	1 cut(s)	604
AccB7I	CCANNNNNTGG	1 cut(s)	741
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	2 cut(s)	193, 704
AcoI	YGGCCR	1 cut(s)	882
AcsI	RAATTY	2 cut(s)	240, 730
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	7 cut(s)	287, 388, 430, 596, 606, 617, 981
AfeI	AGCGCT	1 cut(s)	739
AfiI	CCNNNNNNNGG	1 cut(s)	741
AgsI	TTSAA	4 cut(s)	97, 808, 841, 868
AjnI	CCWGG	1 cut(s)	1032
AjuI	GAANNNNNNNTTGG	2 cut(s)	304, 336
AleI	CACNNNNGTG	1 cut(s)	827
AluBI	AGCT	6 cut(s)	101, 123, 179, 306, 347, 1025
AluI	AGCT	6 cut(s)	101, 123, 179, 306, 347, 1025
Alw26I	GTCTC	2 cut(s)	193, 745
AlwNI	CAGNNNCTG	1 cut(s)	158
Aor51HI	AGCGCT	1 cut(s)	739
AoxI	GGCC	5 cut(s)	79, 475, 574, 882, 1059
ApaI	GGGCCC	1 cut(s)	479
ApeKI	GCWGC	6 cut(s)	5, 8, 37, 101, 158, 832
ApoI	RAATTY	2 cut(s)	240, 730
Asp718I	GGTACC	1 cut(s)	604
AspLEI	GCGC	2 cut(s)	740, 837
AspS9I	GGNCC	4 cut(s)	475, 476, 845, 1060
AsuHPI	GGTGA	4 cut(s)	67, 472, 512, 1022
AvaII	GGWCC	1 cut(s)	845
BaeGI	GKGCMC	1 cut(s)	479
BaeI	ACNNNNGTAYC	2 cut(s)	420, 453
BalI	TGGCCA	1 cut(s)	884
BanI	GGYRCC	1 cut(s)	604
BanII	GRGCYC	1 cut(s)	479
BbvI	GCAGC	6 cut(s)	17, 20, 24, 88, 145, 819
BccI	CCATC	6 cut(s)	46, 55, 236, 335, 374, 1051
BceAI	ACGGC	5 cut(s)	25, 63, 603, 680, 875
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BciT130I	CCWGG	1 cut(s)	1034
BcoDI	GTCTC	2 cut(s)	193, 745
BfaI	CTAG	2 cut(s)	941, 1029
BfmI	CTRYAG	2 cut(s)	301, 1020
BfoI	RGCGCY	1 cut(s)	741
BfuAI	ACCTGC	1 cut(s)	437
BisI	GCNGC	7 cut(s)	6, 9, 38, 102, 159, 705, 833
BlsI	GCNGC	7 cut(s)	7, 10, 39, 103, 160, 706, 834
Bme1390I	CCNGG	1 cut(s)	1034
Bme18I	GGWCC	1 cut(s)	845
BmgT120I	GGNCC	4 cut(s)	475, 476, 845, 1060
BmiI	GGNNCC	4 cut(s)	477, 606, 846, 1062
BmrFI	CCNGG	1 cut(s)	1034
BmsI	GCATC	1 cut(s)	395
Bpu10I	CCTNAGC	1 cut(s)	784
BsaI	GGTCTC	1 cut(s)	745
BsaJI	CCNNGG	2 cut(s)	879, 891
BsaXI	ACNNNNNCTCC	2 cut(s)	7, 37
Bsc4I	CCNNNNNNNGG	1 cut(s)	741
Bse3DI	GCAATG	2 cut(s)	764, 885
BseBI	CCWGG	1 cut(s)	1034
BseDI	CCNNGG	2 cut(s)	879, 891
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	741
BseMI	GCAATG	2 cut(s)	764, 885
BseMII	CTCAG	3 cut(s)	165, 582, 798
BseRI	GAGGAG	1 cut(s)	204
BseSI	GKGCMC	1 cut(s)	479
BseXI	GCAGC	6 cut(s)	17, 20, 24, 88, 145, 819
BseYI	CCCAGC	1 cut(s)	175
BshFI	GGCC	5 cut(s)	81, 477, 576, 884, 1061
BshNI	GGYRCC	1 cut(s)	604
BslFI	GGGAC	1 cut(s)	858
BslI	CCNNNNNNNGG	1 cut(s)	741
BsmAI	GTCTC	2 cut(s)	193, 745
BsmBI	CGTCTC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	858
BsnI	GGCC	5 cut(s)	81, 477, 576, 884, 1061
Bso31I	GGTCTC	1 cut(s)	745
Bsp120I	GGGCCC	1 cut(s)	475
Bsp1286I	GDGCHC	1 cut(s)	479
Bsp143I	GATC	1 cut(s)	276
Bsp19I	CCATGG	1 cut(s)	879
BspACI	CCGC	2 cut(s)	193, 704
BspANI	GGCC	5 cut(s)	81, 477, 576, 884, 1061
BspCNI	CTCAG	3 cut(s)	164, 583, 797
BspHI	TCATGA	2 cut(s)	636, 916
BspLI	GGNNCC	4 cut(s)	477, 606, 846, 1062
BspMI	ACCTGC	1 cut(s)	437
BspT107I	GGYRCC	1 cut(s)	604
BspTNI	GGTCTC	1 cut(s)	745
BsrDI	GCAATG	2 cut(s)	764, 885
BssECI	CCNNGG	2 cut(s)	879, 891
BssMI	GATC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	879
Bst2UI	CCWGG	1 cut(s)	1034
Bst4CI	ACNGT	2 cut(s)	979, 984
Bst6I	CTCTTC	2 cut(s)	98, 930
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	3 cut(s)	151, 591, 784
BstDSI	CCRYGG	2 cut(s)	879, 891
BstF5I	GGATG	1 cut(s)	171
BstH2I	RGCGCY	1 cut(s)	741
BstHHI	GCGC	2 cut(s)	740, 837
BstKTI	GATC	1 cut(s)	279
BstMAI	GTCTC	2 cut(s)	193, 745
BstMBI	GATC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	2 cut(s)	701, 710
BstNI	CCWGG	1 cut(s)	1034
BstSCI	CCNGG	1 cut(s)	1032
BstSFI	CTRYAG	2 cut(s)	301, 1020
BstSLI	GKGCMC	1 cut(s)	479
BstV1I	GCAGC	6 cut(s)	17, 20, 24, 88, 145, 819
BstXI	CCANNNNNNTGG	1 cut(s)	892
BsuRI	GGCC	5 cut(s)	81, 477, 576, 884, 1061
BtgI	CCRYGG	2 cut(s)	879, 891
BtgZI	GCGATG	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	171
BveI	ACCTGC	1 cut(s)	437
Cac8I	GCNNGC	1 cut(s)	345
CaiI	CAGNNNCTG	1 cut(s)	158
CciI	TCATGA	2 cut(s)	636, 916
CfoI	GCGC	2 cut(s)	740, 837
Cfr13I	GGNCC	4 cut(s)	475, 476, 845, 1060
Csp6I	GTAC	7 cut(s)	286, 387, 429, 595, 605, 616, 980
CviAII	CATG	8 cut(s)	70, 128, 232, 280, 637, 825, 880, 917
CviQI	GTAC	7 cut(s)	286, 387, 429, 595, 605, 616, 980
DdeI	CTNAG	3 cut(s)	151, 591, 784
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
EaeI	YGGCCR	1 cut(s)	882
Eam1104I	CTCTTC	2 cut(s)	98, 930
EarI	CTCTTC	2 cut(s)	98, 930
Eco130I	CCWWGG	1 cut(s)	879
Eco24I	GRGCYC	1 cut(s)	479
Eco31I	GGTCTC	1 cut(s)	745
Eco47I	GGWCC	1 cut(s)	845
Eco47III	AGCGCT	1 cut(s)	739
Eco57I	CTGAAG	1 cut(s)	306
EcoO109I	RGGNCCY	4 cut(s)	475, 476, 845, 1060
EcoRII	CCWGG	1 cut(s)	1032
EcoT14I	CCWWGG	1 cut(s)	879
EcoT38I	GRGCYC	1 cut(s)	479
ErhI	CCWWGG	1 cut(s)	879
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	8 cut(s)	73, 131, 235, 283, 640, 828, 883, 920
FaqI	GGGAC	1 cut(s)	858
FatI	CATG	8 cut(s)	69, 127, 231, 279, 636, 824, 879, 916
FauI	CCCGC	1 cut(s)	200
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	7 cut(s)	6, 9, 38, 102, 159, 705, 833
FokI	GGATG	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	479
Fsp4HI	GCNGC	7 cut(s)	6, 9, 38, 102, 159, 705, 833
FspBI	CTAG	2 cut(s)	941, 1029
GlaI	GCGC	2 cut(s)	739, 836
GluI	GCNGC	7 cut(s)	6, 9, 38, 102, 159, 705, 833
GsaI	CCCAGC	1 cut(s)	179
HaeII	RGCGCY	1 cut(s)	741
HaeIII	GGCC	5 cut(s)	81, 477, 576, 884, 1061
HhaI	GCGC	2 cut(s)	740, 837
Hin1II	CATG	8 cut(s)	73, 131, 235, 283, 640, 828, 883, 920
Hin6I	GCGC	2 cut(s)	738, 835
HinP1I	GCGC	2 cut(s)	738, 835
HinfI	GANTC	4 cut(s)	255, 294, 463, 1037
HphI	GGTGA	4 cut(s)	67, 472, 512, 1022
Hpy166II	GTNNAC	4 cut(s)	45, 142, 288, 820
Hpy188III	TCNNGA	2 cut(s)	637, 917
Hpy8I	GTNNAC	4 cut(s)	45, 142, 288, 820
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	3 cut(s)	587, 835, 923
HpyCH4III	ACNGT	2 cut(s)	979, 984
HpyCH4IV	ACGT	2 cut(s)	75, 663
HpyCH4V	TGCA	6 cut(s)	69, 408, 446, 452, 764, 1072
HpyF10VI	GCNNNNNNNGC	2 cut(s)	701, 710
HpyF3I	CTNAG	3 cut(s)	151, 591, 784
HpySE526I	ACGT	2 cut(s)	75, 663
Hsp92II	CATG	8 cut(s)	73, 131, 235, 283, 640, 828, 883, 920
HspAI	GCGC	2 cut(s)	738, 835
KpnI	GGTACC	1 cut(s)	608
Kzo9I	GATC	1 cut(s)	276
LmnI	GCTCC	2 cut(s)	184, 947
Lsp1109I	GCAGC	6 cut(s)	17, 20, 24, 88, 145, 819
LweI	GCATC	1 cut(s)	395
MaeI	CTAG	2 cut(s)	941, 1029
MaeII	ACGT	2 cut(s)	75, 663
MaeIII	GTNAC	4 cut(s)	23, 55, 460, 856
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MboII	GAAGA	7 cut(s)	85, 236, 239, 661, 664, 917, 1025
MhlI	GDGCHC	1 cut(s)	479
MlsI	TGGCCA	1 cut(s)	884
MluCI	AATT	6 cut(s)	240, 559, 567, 656, 730, 954
MluNI	TGGCCA	1 cut(s)	884
MlyI	GAGTC	2 cut(s)	249, 457
MmeI	TCCRAC	2 cut(s)	335, 925
MnlI	CCTC	5 cut(s)	9, 222, 225, 489, 537
Mox20I	TGGCCA	1 cut(s)	884
MscI	TGGCCA	1 cut(s)	884
MseI	TTAA	1 cut(s)	659
MslI	CAYNNNNRTG	3 cut(s)	50, 827, 890
Msp20I	TGGCCA	1 cut(s)	884
MspR9I	CCNGG	1 cut(s)	1034
MvaI	CCWGG	1 cut(s)	1034
MwoI	GCNNNNNNNGC	2 cut(s)	701, 710
NcoI	CCATGG	1 cut(s)	879
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	8 cut(s)	73, 131, 235, 283, 640, 828, 883, 920
NlaIV	GGNNCC	4 cut(s)	477, 606, 846, 1062
NmuCI	GTSAC	3 cut(s)	55, 460, 856
OliI	CACNNNNGTG	1 cut(s)	827
PagI	TCATGA	2 cut(s)	636, 916
PaqCI	CACCTGC	1 cut(s)	437
PfeI	GAWTC	2 cut(s)	294, 1037
PflMI	CCANNNNNTGG	1 cut(s)	741
PkrI	GCNGC	7 cut(s)	7, 10, 39, 103, 160, 706, 834
PleI	GAGTC	2 cut(s)	249, 457
PpsI	GAGTC	2 cut(s)	249, 457
PpuMI	RGGWCCY	1 cut(s)	845
Psp5II	RGGWCCY	1 cut(s)	845
Psp6I	CCWGG	1 cut(s)	1032
PspFI	CCCAGC	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	1032
PspN4I	GGNNCC	4 cut(s)	477, 606, 846, 1062
PspOMI	GGGCCC	1 cut(s)	475
PspPI	GGNCC	4 cut(s)	475, 476, 845, 1060
PspPPI	RGGWCCY	1 cut(s)	845
PstNI	CAGNNNCTG	1 cut(s)	158
RsaI	GTAC	7 cut(s)	287, 388, 430, 596, 606, 617, 981
RsaNI	GTAC	7 cut(s)	286, 387, 429, 595, 605, 616, 980
RseI	CAYNNNNRTG	3 cut(s)	50, 827, 890
SaqAI	TTAA	1 cut(s)	659
SatI	GCNGC	7 cut(s)	6, 9, 38, 102, 159, 705, 833
Sau3AI	GATC	1 cut(s)	276
Sau96I	GGNCC	4 cut(s)	475, 476, 845, 1060
SchI	GAGTC	2 cut(s)	249, 457
ScrFI	CCNGG	1 cut(s)	1034
SduI	GDGCHC	1 cut(s)	479
SfaNI	GCATC	1 cut(s)	395
SfcI	CTRYAG	2 cut(s)	301, 1020
SinI	GGWCC	1 cut(s)	845
SmiMI	CAYNNNNRTG	3 cut(s)	50, 827, 890
Sse9I	AATT	6 cut(s)	240, 559, 567, 656, 730, 954
SsiI	CCGC	2 cut(s)	193, 704
SspMI	CTAG	2 cut(s)	941, 1029
StyD4I	CCNGG	1 cut(s)	1032
StyI	CCWWGG	1 cut(s)	879
TaaI	ACNGT	2 cut(s)	979, 984
TaiI	ACGT	2 cut(s)	78, 666
TasI	AATT	6 cut(s)	240, 559, 567, 656, 730, 954
TatI	WGTACW	3 cut(s)	386, 594, 979
TauI	GCSGC	1 cut(s)	707
TfiI	GAWTC	2 cut(s)	294, 1037
Tru1I	TTAA	1 cut(s)	659
Tru9I	TTAA	1 cut(s)	659
TseFI	GTSAC	3 cut(s)	55, 460, 856
TseI	GCWGC	6 cut(s)	5, 8, 37, 101, 158, 832
Tsp45I	GTSAC	3 cut(s)	55, 460, 856
TspDTI	ATGAA	6 cut(s)	86, 258, 653, 669, 905, 917
Van91I	CCANNNNNTGG	1 cut(s)	741
VpaK11BI	GGWCC	1 cut(s)	845
XapI	RAATTY	2 cut(s)	240, 730
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	2 cut(s)	941, 1029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.