Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003787.1

Orthogroup ID

OG0004267

Physical Location & Seq

Genomic Coordinates Forward (+)

41198 .. 43250

Gene Structure 2053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003787.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atggcagcaggaaggtcttgttacagagatgtgcttccgtttacagccatggtggctatggagtccaccaacgtgggattgaacacactgttcaaagctgcaaccatgagagggatgagctaccatgtctttattgtctactcttattccatagctgctcttgctcttcttccagctcccttcatttcccacagatcaaggaggcttcctcctctcaacttttccatcatgagcaaaattcttcttcttgggctaattgggagttcatctcagataatggggtttacaggaatcagttacagctctccaacgcttgcttctgctatcagcaaccttgtgccagctttcactttcattcttgccattattttcaggatggaaagtgtagctttgaaaagtagaagcagtcaagctaaaatcttgggtactatagtttcacttgcaggtgcatttgtggtgactttctataagggcccccgaatttccctcactagtcagacacaatctctgatgctaaactcaacagcttcaaactcagactggatcattggaggccttctaataacagctgagtatatattggtgacactttggtacattgttcaggcacgaattatgaaagagtatccaaatgaattaactgtgatcttcttctacaatgttatcgtcagcatcgtagctgcagttgttggtttgattacagaaaaaaatccaaatgcttggaggttgagaccagatatggcattggtctccatcctgtgctcaggattactaagctcattattgaacaattctgttcacacatggaccttgcgcgtgaaggggcctgtgtatgtgacaatgttcaagccattgtcaattgccattgctgttgtcatgggcgttacgttccttggtgatacactttgcctgggaagcctacttggagcatcgataatatcgattgggttttatacggtactatggggaaaagctaaagaagacgctggtgaagactccggagctaatagcctggagtcaccatctagcaacaaggcccctttattgcaaacctataaaaccgagaatgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

357

Amino Acids

38.6

Weight (kDa)

9.54

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28050 AT3G28060
fragaria_vesca	FvH4_6g50360 FvH4_6g50360 FvH4_6g50360 FvH4_6g50360 FvH4_6g50360
malus_domestica	MD09G1036900.v1.1 MD17G1038300.v1.1
prunus_persica	Prupe.3G280700_v2.0.a1 Prupe.3G280700_v2.0.a1 Prupe.3G280700_v2.0.a1
pyrus_communis	pycom111g02970 pycom17g03450
rosa_chinensis	RchiOBHm_Chr2g0170681 RchiOBHm_Chr2g0170701
rosa_laevigata	RLG00000021975 RLG00000021976
rosa_multiflora	Rmu_sc0003787.1_g000008 Rmu_sc0003787.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081110 Rroxscaffold_2G00081120
rosa_rugosa	Rorug02G0550400 Rorug02G0550500
rosa_samantha	Rh2AG623400 Rh2AG623500 Rh2BG633900 Rh2BG634000 Rh2CG603100 Rh2CG603200
rosa_wichuraiana	Rw2G051630 Rw2G051640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	434
Acc36I	ACCTGC	1 cut(s)	434
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	1 cut(s)	816
AccIII	TCCGGA	1 cut(s)	998
AclWI	GGATC	1 cut(s)	551
AcsI	RAATTY	2 cut(s)	237, 480
AfaI	GTAC	3 cut(s)	427, 596, 960
AfiI	CCNNNNNNNGG	1 cut(s)	111
AgsI	TTSAA	6 cut(s)	82, 94, 394, 531, 787, 847
AhlI	ACTAGT	1 cut(s)	491
AjnI	CCWGG	2 cut(s)	909, 1011
AjuI	GAANNNNNNNTTGG	2 cut(s)	301, 333
AleI	CACNNNNGTG	1 cut(s)	71
Alw21I	GWGCWC	1 cut(s)	764
Alw26I	GTCTC	2 cut(s)	724, 754
AlwI	GGATC	1 cut(s)	551
Aor13HI	TCCGGA	1 cut(s)	998
AoxI	GGCC	4 cut(s)	472, 553, 824, 1035
ApaI	GGGCCC	1 cut(s)	476
ApeKI	GCWGC	4 cut(s)	5, 98, 155, 680
ApoI	RAATTY	2 cut(s)	237, 480
AspLEI	GCGC	1 cut(s)	816
AspS9I	GGNCC	5 cut(s)	472, 473, 807, 824, 1036
AsuHPI	GGTGA	5 cut(s)	469, 595, 908, 1001, 1011
AvaII	GGWCC	1 cut(s)	807
BaeGI	GKGCMC	1 cut(s)	476
BaeI	ACNNNNGTAYC	2 cut(s)	417, 450
BanII	GRGCYC	1 cut(s)	476
BbsI	GAAGAC	2 cut(s)	987, 999
Bbv12I	GWGCWC	1 cut(s)	764
BbvI	GCAGC	4 cut(s)	17, 85, 142, 667
BccI	CCATC	4 cut(s)	233, 370, 761, 1030
BciT130I	CCWGG	2 cut(s)	911, 1013
BciVI	GTATCC	1 cut(s)	636
BcoDI	GTCTC	2 cut(s)	724, 754
BcuI	ACTAGT	1 cut(s)	491
BfaI	CTAG	3 cut(s)	492, 1026, 1072
BfmI	CTRYAG	2 cut(s)	429, 681
BfuAI	ACCTGC	1 cut(s)	434
BfuI	GTATCC	1 cut(s)	636
BglI	GCCNNNNNGGC	1 cut(s)	53
BisI	GCNGC	4 cut(s)	6, 99, 156, 681
BlsI	GCNGC	4 cut(s)	7, 100, 157, 682
Bme1390I	CCNGG	2 cut(s)	911, 1013
Bme18I	GGWCC	1 cut(s)	807
BmgT120I	GGNCC	5 cut(s)	472, 473, 807, 824, 1036
BmiI	GGNNCC	4 cut(s)	474, 475, 825, 1038
BmrFI	CCNGG	2 cut(s)	911, 1013
BmsI	GCATC	3 cut(s)	501, 681, 938
BpiI	GAAGAC	2 cut(s)	987, 999
BplI	GAGNNNNNCTC	4 cut(s)	193, 225, 253, 285
BpmI	CTGGAG	1 cut(s)	1034
Bpu10I	CCTNAGC	1 cut(s)	763
Bsa29I	ATCGAT	2 cut(s)	932, 941
BsaI	GGTCTC	2 cut(s)	724, 754
BsaJI	CCNNGG	3 cut(s)	48, 892, 910
BsaWI	WCCGGW	1 cut(s)	998
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse1I	ACTGG	1 cut(s)	545
Bse3DI	GCAATG	1 cut(s)	864
BseAI	TCCGGA	1 cut(s)	998
BseBI	CCWGG	2 cut(s)	911, 1013
BseCI	ATCGAT	2 cut(s)	932, 941
BseDI	CCNNGG	3 cut(s)	48, 892, 910
BseGI	GGATG	3 cut(s)	120, 381, 753
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMI	GCAATG	1 cut(s)	864
BseMII	CTCAG	4 cut(s)	284, 549, 561, 777
BseNI	ACTGG	1 cut(s)	545
BseRI	GAGGAG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	476
BseXI	GCAGC	4 cut(s)	17, 85, 142, 667
Bsh1236I	CGCG	1 cut(s)	816
BshFI	GGCC	4 cut(s)	474, 555, 826, 1037
BshVI	ATCGAT	2 cut(s)	932, 941
BsiHKAI	GWGCWC	1 cut(s)	764
BsiSI	CCGG	1 cut(s)	999
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmAI	GTCTC	2 cut(s)	724, 754
BsnI	GGCC	4 cut(s)	474, 555, 826, 1037
Bso31I	GGTCTC	2 cut(s)	724, 754
Bsp120I	GGGCCC	1 cut(s)	472
Bsp1286I	GDGCHC	2 cut(s)	476, 764
Bsp13I	TCCGGA	1 cut(s)	998
Bsp143I	GATC	3 cut(s)	194, 543, 645
Bsp19I	CCATGG	1 cut(s)	48
BspANI	GGCC	4 cut(s)	474, 555, 826, 1037
BspCNI	CTCAG	4 cut(s)	283, 548, 562, 776
BspDI	ATCGAT	2 cut(s)	932, 941
BspEI	TCCGGA	1 cut(s)	998
BspFNI	CGCG	1 cut(s)	816
BspHI	TCATGA	1 cut(s)	228
BspLI	GGNNCC	4 cut(s)	474, 475, 825, 1038
BspMAI	CTGCAG	1 cut(s)	685
BspMI	ACCTGC	1 cut(s)	434
BspPI	GGATC	1 cut(s)	551
BspQI	GCTCTTC	1 cut(s)	171
BspTNI	GGTCTC	2 cut(s)	724, 754
BsrDI	GCAATG	1 cut(s)	864
BsrI	ACTGG	1 cut(s)	545
BssECI	CCNNGG	3 cut(s)	48, 892, 910
BssMI	GATC	3 cut(s)	194, 543, 645
BssT1I	CCWWGG	2 cut(s)	48, 892
Bst2UI	CCWGG	2 cut(s)	911, 1013
Bst4CI	ACNGT	3 cut(s)	90, 643, 958
Bst6I	CTCTTC	1 cut(s)	171
BstC8I	GCNNGC	2 cut(s)	315, 342
BstDEI	CTNAG	5 cut(s)	270, 535, 570, 763, 773
BstDSI	CCRYGG	1 cut(s)	48
BstF5I	GGATG	3 cut(s)	120, 381, 753
BstFNI	CGCG	1 cut(s)	816
BstHHI	GCGC	1 cut(s)	816
BstKTI	GATC	3 cut(s)	197, 546, 648
BstMAI	GTCTC	2 cut(s)	724, 754
BstMBI	GATC	3 cut(s)	194, 543, 645
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 161, 915
BstNI	CCWGG	2 cut(s)	911, 1013
BstSCI	CCNGG	2 cut(s)	909, 1011
BstSFI	CTRYAG	2 cut(s)	429, 681
BstSLI	GKGCMC	1 cut(s)	476
BstUI	CGCG	1 cut(s)	816
BstV1I	GCAGC	4 cut(s)	17, 85, 142, 667
BstV2I	GAAGAC	2 cut(s)	987, 999
BstXI	CCANNNNNNTGG	2 cut(s)	73, 720
Bsu15I	ATCGAT	2 cut(s)	932, 941
BsuI	GTATCC	1 cut(s)	636
BsuRI	GGCC	4 cut(s)	474, 555, 826, 1037
BsuTUI	ATCGAT	2 cut(s)	932, 941
BtgI	CCRYGG	1 cut(s)	48
BtsCI	GGATG	3 cut(s)	120, 381, 753
BtsIMutI	CAGTG	1 cut(s)	86
BveI	ACCTGC	1 cut(s)	434
Cac8I	GCNNGC	2 cut(s)	315, 342
CciI	TCATGA	1 cut(s)	228
CfoI	GCGC	1 cut(s)	816
Cfr13I	GGNCC	5 cut(s)	472, 473, 807, 824, 1036
ClaI	ATCGAT	2 cut(s)	932, 941
CseI	GACGC	1 cut(s)	992
Csp6I	GTAC	3 cut(s)	426, 595, 959
CviAII	CATG	6 cut(s)	49, 106, 125, 229, 804, 877
CviQI	GTAC	3 cut(s)	426, 595, 959
DdeI	CTNAG	5 cut(s)	270, 535, 570, 763, 773
DpnI	GATC	3 cut(s)	196, 545, 647
DpnII	GATC	3 cut(s)	194, 543, 645
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco130I	CCWWGG	2 cut(s)	48, 892
Eco147I	AGGCCT	1 cut(s)	555
Eco24I	GRGCYC	1 cut(s)	476
Eco31I	GGTCTC	2 cut(s)	724, 754
Eco47I	GGWCC	1 cut(s)	807
EcoO109I	RGGNCCY	4 cut(s)	472, 473, 824, 1036
EcoRII	CCWGG	2 cut(s)	909, 1011
EcoT14I	CCWWGG	2 cut(s)	48, 892
EcoT38I	GRGCYC	1 cut(s)	476
ErhI	CCWWGG	2 cut(s)	48, 892
FaeI	CATG	6 cut(s)	52, 109, 128, 232, 807, 880
FalI	AAGNNNNNCTT	2 cut(s)	373, 405
FatI	CATG	6 cut(s)	48, 105, 124, 228, 803, 876
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	4 cut(s)	6, 99, 156, 681
FokI	GGATG	3 cut(s)	127, 388, 740
FriOI	GRGCYC	1 cut(s)	476
Fsp4HI	GCNGC	4 cut(s)	6, 99, 156, 681
FspBI	CTAG	3 cut(s)	492, 1026, 1072
GlaI	GCGC	1 cut(s)	815
GluI	GCNGC	4 cut(s)	6, 99, 156, 681
GsuI	CTGGAG	1 cut(s)	1034
HaeIII	GGCC	4 cut(s)	474, 555, 826, 1037
HapII	CCGG	1 cut(s)	999
HgaI	GACGC	1 cut(s)	992
HhaI	GCGC	1 cut(s)	816
Hin1II	CATG	6 cut(s)	52, 109, 128, 232, 807, 880
Hin6I	GCGC	1 cut(s)	814
HinP1I	GCGC	1 cut(s)	814
HinfI	GANTC	4 cut(s)	62, 291, 995, 1016
HpaII	CCGG	1 cut(s)	999
HphI	GGTGA	5 cut(s)	469, 595, 908, 1001, 1011
Hpy166II	GTNNAC	5 cut(s)	42, 66, 139, 285, 799
Hpy188I	TCNGA	4 cut(s)	273, 498, 510, 538
Hpy188III	TCNNGA	4 cut(s)	229, 373, 765, 999
Hpy8I	GTNNAC	5 cut(s)	42, 66, 139, 285, 799
HpyAV	CCTTC	4 cut(s)	6, 190, 566, 814
HpyCH4III	ACNGT	3 cut(s)	90, 643, 958
HpyCH4IV	ACGT	2 cut(s)	72, 887
HpyCH4V	TGCA	5 cut(s)	101, 443, 449, 683, 1048
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 161, 915
HpyF3I	CTNAG	5 cut(s)	270, 535, 570, 763, 773
HpySE526I	ACGT	2 cut(s)	72, 887
Hsp92II	CATG	6 cut(s)	52, 109, 128, 232, 807, 880
HspAI	GCGC	1 cut(s)	814
Kpn2I	TCCGGA	1 cut(s)	998
Kzo9I	GATC	3 cut(s)	194, 543, 645
LguI	GCTCTTC	1 cut(s)	171
LmnI	GCTCC	3 cut(s)	181, 926, 1001
Lsp1109I	GCAGC	4 cut(s)	17, 85, 142, 667
LweI	GCATC	3 cut(s)	501, 681, 938
MaeI	CTAG	3 cut(s)	492, 1026, 1072
MaeII	ACGT	2 cut(s)	72, 887
MaeIII	GTNAC	7 cut(s)	20, 296, 457, 583, 835, 883, 1017
MalI	GATC	3 cut(s)	196, 545, 647
MboI	GATC	3 cut(s)	194, 543, 645
MboII	GAAGA	8 cut(s)	158, 161, 233, 236, 640, 643, 992, 1004
MfeI	CAATTG	1 cut(s)	858
MhlI	GDGCHC	2 cut(s)	476, 764
MluCI	AATT	7 cut(s)	237, 255, 480, 612, 635, 790, 858
MlyI	GAGTC	3 cut(s)	71, 989, 1025
MmeI	TCCRAC	1 cut(s)	332
MnlI	CCTC	7 cut(s)	104, 195, 219, 222, 497, 545, 717
MroI	TCCGGA	1 cut(s)	998
MseI	TTAA	1 cut(s)	638
MslI	CAYNNNNRTG	1 cut(s)	71
MspA1I	CMGCKG	1 cut(s)	569
MspI	CCGG	1 cut(s)	999
MspR9I	CCNGG	2 cut(s)	911, 1013
MunI	CAATTG	1 cut(s)	858
MvaI	CCWGG	2 cut(s)	911, 1013
MvnI	CGCG	1 cut(s)	816
MwoI	GCNNNNNNNGC	3 cut(s)	53, 161, 915
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	3 cut(s)	194, 543, 645
NlaIII	CATG	6 cut(s)	52, 109, 128, 232, 807, 880
NlaIV	GGNNCC	4 cut(s)	474, 475, 825, 1038
NmuCI	GTSAC	4 cut(s)	457, 583, 835, 1017
OliI	CACNNNNGTG	1 cut(s)	71
PagI	TCATGA	1 cut(s)	228
PaqCI	CACCTGC	1 cut(s)	434
PceI	AGGCCT	1 cut(s)	555
PciSI	GCTCTTC	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	2 cut(s)	672, 938
PfeI	GAWTC	1 cut(s)	291
PkrI	GCNGC	4 cut(s)	7, 100, 157, 682
PleI	GAGTC	3 cut(s)	70, 989, 1024
PpsI	GAGTC	3 cut(s)	70, 989, 1024
Psp6I	CCWGG	2 cut(s)	909, 1011
PspGI	CCWGG	2 cut(s)	909, 1011
PspN4I	GGNNCC	4 cut(s)	474, 475, 825, 1038
PspOMI	GGGCCC	1 cut(s)	472
PspPI	GGNCC	5 cut(s)	472, 473, 807, 824, 1036
PstI	CTGCAG	1 cut(s)	685
PvuII	CAGCTG	1 cut(s)	569
RsaI	GTAC	3 cut(s)	427, 596, 960
RsaNI	GTAC	3 cut(s)	426, 595, 959
RseI	CAYNNNNRTG	1 cut(s)	71
SapI	GCTCTTC	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	638
SatI	GCNGC	4 cut(s)	6, 99, 156, 681
Sau3AI	GATC	3 cut(s)	194, 543, 645
Sau96I	GGNCC	5 cut(s)	472, 473, 807, 824, 1036
SchI	GAGTC	3 cut(s)	71, 989, 1025
ScrFI	CCNGG	2 cut(s)	911, 1013
SduI	GDGCHC	2 cut(s)	476, 764
SfaNI	GCATC	3 cut(s)	501, 681, 938
SfcI	CTRYAG	2 cut(s)	429, 681
SinI	GGWCC	1 cut(s)	807
SmiMI	CAYNNNNRTG	1 cut(s)	71
SpeI	ACTAGT	1 cut(s)	491
Sse9I	AATT	7 cut(s)	237, 255, 480, 612, 635, 790, 858
SseBI	AGGCCT	1 cut(s)	555
SspMI	CTAG	3 cut(s)	492, 1026, 1072
StuI	AGGCCT	1 cut(s)	555
StyD4I	CCNGG	2 cut(s)	909, 1011
StyI	CCWWGG	2 cut(s)	48, 892
TaaI	ACNGT	3 cut(s)	90, 643, 958
TaiI	ACGT	2 cut(s)	75, 890
TaqI	TCGA	2 cut(s)	932, 941
TasI	AATT	7 cut(s)	237, 255, 480, 612, 635, 790, 858
TfiI	GAWTC	1 cut(s)	291
Tru1I	TTAA	1 cut(s)	638
Tru9I	TTAA	1 cut(s)	638
TscAI	CASTG	1 cut(s)	93
TseFI	GTSAC	4 cut(s)	457, 583, 835, 1017
TseI	GCWGC	4 cut(s)	5, 98, 155, 680
Tsp45I	GTSAC	4 cut(s)	457, 583, 835, 1017
TspDTI	ATGAA	5 cut(s)	172, 255, 343, 632, 648
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	1 cut(s)	93
VpaK11BI	GGWCC	1 cut(s)	807
XapI	RAATTY	2 cut(s)	237, 480
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55
XmiI	GTMKAC	1 cut(s)	138
XspI	CTAG	3 cut(s)	492, 1026, 1072

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.