Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004267

Physical Location & Seq

Genomic Coordinates Reverse (-)

25629895 .. 25632612

Gene Structure 2718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G280700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCAGGGAGGTCTTGTTACACGGATGTCTTGCCATTCATGGCCATGGTGACTATGGAGTGCACGAACGTGGGTTTAAACACTCTCTTCAAAGCAGCCACTTTGAGAGGAATGAGCTACCATGTCTTTGTTGTCTATTCTTACTCTGTAGCTGCTCTTTTTCTCCTTCCAGCACCCTTCATCTCTAACAGATCAAGGGTGCTTCCTCCCCTCAACTTCTCCATAATGTCTAAAGTTCTTCTTCTTGGGCTTATAGGGAGTTCATCTCAGATCATGGGGTACACAGGCATCAATTTCAGCTCTCCAACTCTTGCTTCAGCCATCAGCAACCTTGTGCCTGCTTTTACTTTCATTCTTGCCGTCATTTTCAGGATGGAAAGTGCAGCTTTGAGAAGCAGAAGCAGTCAAGCCAAAATCTTGGGTACAATAGTTTCACTTGCAGGTGCATTTGTGGTAACTCTCTATAAGGGCCCACCACTTGTGTTTCCTCATCAATCACCGTCAATTTCACTTCACCAACCTCTTCTAAACCCAACAACACCAACAAACTCAAACTGGGTCCTTGGTGGCCTTCTGCTAACAGCTGAATATATATTGGTACCACTGTGGTACATTGTTCAGGCACAAATTATGAAAGAGTACCCGAACGAATTAACTGTAATTTTTTTCTACAATGTATGCGTGGGCGTCGTAGCTGGCGTTGTTGCTCTGATTACAGAACCAAATTCCAGTGCTTGGAAGTTGAGACCAAATGTTGCATTGGTCTCCATTTTGTGCTCAGGGTTATTTGGGTCATTTTTGAACAATACTGTGCACACATGGGCCTTGCGCTTGAAGGGACCTGTCTATGTGACAATGTTCAAGCCTTTGTCAATGGCCATTGCTGTTGCCATGGGTGTCATCTTCCTTGGTGACACTCTTCATCTTGGAAGCCTAGTTGGAGCAACAATAATATCAATCGGGTTTTATACGGTGCTGTGGGGAAAAGCAAAGGAAGAGGCTGTTGAAGATTCTGTAGCTGATAGCCTGGAAGCCCCATCTGCCCACAAGGCCCCATTATTGCAAAAGTATATTAAAAACGACAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

364

Amino Acids

39.25

Weight (kDa)

9.2

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28050 AT3G28060
fragaria_vesca	FvH4_6g50360 FvH4_6g50360 FvH4_6g50360 FvH4_6g50360 FvH4_6g50360
malus_domestica	MD09G1036900.v1.1 MD17G1038300.v1.1
prunus_persica	Prupe.3G280700_v2.0.a1 Prupe.3G280700_v2.0.a1 Prupe.3G280700_v2.0.a1
pyrus_communis	pycom111g02970 pycom17g03450
rosa_chinensis	RchiOBHm_Chr2g0170681 RchiOBHm_Chr2g0170701
rosa_laevigata	RLG00000021975 RLG00000021976
rosa_multiflora	Rmu_sc0003787.1_g000008 Rmu_sc0003787.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081110 Rroxscaffold_2G00081120
rosa_rugosa	Rorug02G0550400 Rorug02G0550500
rosa_samantha	Rh2AG623400 Rh2AG623500 Rh2BG633900 Rh2BG634000 Rh2CG603100 Rh2CG603200
rosa_wichuraiana	Rw2G051630 Rw2G051640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	431
Acc36I	ACCTGC	1 cut(s)	431
Acc65I	GGTACC	1 cut(s)	598
AccB1I	GGYRCC	1 cut(s)	598
AccB7I	CCANNNNNTGG	1 cut(s)	735
AcoI	YGGCCR	2 cut(s)	42, 876
AcsI	RAATTY	1 cut(s)	724
AcuI	CTGAAG	1 cut(s)	300
AcyI	GRCGYC	1 cut(s)	687
AfaI	GTAC	5 cut(s)	281, 424, 600, 611, 641
AfiI	CCNNNNNNNGG	1 cut(s)	735
AgsI	TTSAA	5 cut(s)	91, 802, 835, 862, 1007
AjnI	CCWGG	1 cut(s)	1026
AjuI	GAANNNNNNNTTGG	2 cut(s)	298, 330
AleI	CACNNNNGTG	1 cut(s)	68
AluBI	AGCT	7 cut(s)	117, 152, 300, 386, 584, 695, 1019
AluI	AGCT	7 cut(s)	117, 152, 300, 386, 584, 695, 1019
Alw21I	GWGCWC	3 cut(s)	65, 779, 816
Alw26I	GTCTC	2 cut(s)	739, 769
Alw44I	GTGCAC	2 cut(s)	61, 812
AoxI	GGCC	6 cut(s)	42, 469, 568, 822, 876, 1050
ApaI	GGGCCC	1 cut(s)	473
ApaLI	GTGCAC	2 cut(s)	61, 812
ApeKI	GCWGC	3 cut(s)	95, 152, 383
ApoI	RAATTY	1 cut(s)	724
Asp718I	GGTACC	1 cut(s)	598
AspLEI	GCGC	1 cut(s)	831
AspS9I	GGNCC	6 cut(s)	469, 470, 559, 822, 839, 1051
AsuHPI	GGTGA	4 cut(s)	61, 489, 506, 923
AvaII	GGWCC	2 cut(s)	559, 839
BaeGI	GKGCMC	3 cut(s)	65, 473, 816
BaeI	ACNNNNGTAYC	4 cut(s)	414, 447, 590, 623
BalI	TGGCCA	2 cut(s)	44, 878
BanI	GGYRCC	1 cut(s)	598
BanII	GRGCYC	1 cut(s)	473
Bbv12I	GWGCWC	3 cut(s)	65, 779, 816
BbvI	GCAGC	3 cut(s)	107, 139, 395
BccI	CCATC	3 cut(s)	329, 367, 1045
BceAI	ACGGC	1 cut(s)	344
BciT130I	CCWGG	1 cut(s)	1028
BcoDI	GTCTC	2 cut(s)	739, 769
BfaI	CTAG	1 cut(s)	935
BfmI	CTRYAG	2 cut(s)	147, 1014
BfuAI	ACCTGC	1 cut(s)	431
BglI	GCCNNNNNGGC	1 cut(s)	1049
BisI	GCNGC	3 cut(s)	96, 153, 384
BlsI	GCNGC	3 cut(s)	97, 154, 385
Bme1390I	CCNGG	1 cut(s)	1028
Bme18I	GGWCC	2 cut(s)	559, 839
BmgT120I	GGNCC	6 cut(s)	469, 470, 559, 822, 839, 1051
BmiI	GGNNCC	5 cut(s)	471, 560, 600, 840, 1053
BmrFI	CCNGG	1 cut(s)	1028
BmrI	ACTGGG	1 cut(s)	565
BmsI	GCATC	1 cut(s)	297
BmuI	ACTGGG	1 cut(s)	565
BplI	GAGNNNNNCTC	2 cut(s)	250, 282
Bpu10I	CCTNAGC	1 cut(s)	778
BsaHI	GRCGYC	1 cut(s)	687
BsaI	GGTCTC	2 cut(s)	739, 769
BsaJI	CCNNGG	4 cut(s)	45, 562, 891, 907
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	735
Bse1I	ACTGG	2 cut(s)	560, 729
Bse3DI	GCAATG	1 cut(s)	879
BseBI	CCWGG	1 cut(s)	1028
BseDI	CCNNGG	4 cut(s)	45, 562, 891, 907
BseGI	GGATG	2 cut(s)	31, 378
BseLI	CCNNNNNNNGG	1 cut(s)	735
BseMI	GCAATG	1 cut(s)	879
BseMII	CTCAG	2 cut(s)	281, 792
BseNI	ACTGG	2 cut(s)	560, 729
BseSI	GKGCMC	3 cut(s)	65, 473, 816
BseXI	GCAGC	3 cut(s)	107, 139, 395
BsgI	GTGCAG	1 cut(s)	402
BshFI	GGCC	6 cut(s)	44, 471, 570, 824, 878, 1052
BshNI	GGYRCC	1 cut(s)	598
BsiHKAI	GWGCWC	3 cut(s)	65, 779, 816
BslFI	GGGAC	1 cut(s)	852
BslI	CCNNNNNNNGG	1 cut(s)	735
BsmAI	GTCTC	2 cut(s)	739, 769
BsmFI	GGGAC	1 cut(s)	852
BsnI	GGCC	6 cut(s)	44, 471, 570, 824, 878, 1052
Bso31I	GGTCTC	2 cut(s)	739, 769
Bsp120I	GGGCCC	1 cut(s)	469
Bsp1286I	GDGCHC	4 cut(s)	65, 473, 779, 816
Bsp143I	GATC	2 cut(s)	191, 270
Bsp19I	CCATGG	2 cut(s)	45, 891
BspANI	GGCC	6 cut(s)	44, 471, 570, 824, 878, 1052
BspCNI	CTCAG	2 cut(s)	280, 791
BspLI	GGNNCC	5 cut(s)	471, 560, 600, 840, 1053
BspMI	ACCTGC	1 cut(s)	431
BspT107I	GGYRCC	1 cut(s)	598
BspTNI	GGTCTC	2 cut(s)	739, 769
BsrDI	GCAATG	1 cut(s)	879
BsrI	ACTGG	2 cut(s)	560, 729
BssECI	CCNNGG	4 cut(s)	45, 562, 891, 907
BssMI	GATC	2 cut(s)	191, 270
BssNI	GRCGYC	1 cut(s)	687
BssT1I	CCWWGG	4 cut(s)	45, 562, 891, 907
Bst2UI	CCWGG	1 cut(s)	1028
Bst4CI	ACNGT	5 cut(s)	501, 606, 658, 811, 973
Bst6I	CTCTTC	4 cut(s)	92, 528, 924, 990
BstACI	GRCGYC	1 cut(s)	687
BstC8I	GCNNGC	2 cut(s)	339, 697
BstDEI	CTNAG	2 cut(s)	267, 778
BstDSI	CCRYGG	2 cut(s)	45, 891
BstF5I	GGATG	2 cut(s)	31, 378
BstHHI	GCGC	1 cut(s)	831
BstKTI	GATC	2 cut(s)	194, 273
BstMAI	GTCTC	2 cut(s)	739, 769
BstMBI	GATC	2 cut(s)	191, 270
BstMWI	GCNNNNNNNGC	2 cut(s)	1040, 1049
BstNI	CCWGG	1 cut(s)	1028
BstSCI	CCNGG	1 cut(s)	1026
BstSFI	CTRYAG	2 cut(s)	147, 1014
BstSLI	GKGCMC	3 cut(s)	65, 473, 816
BstV1I	GCAGC	3 cut(s)	107, 139, 395
BstXI	CCANNNNNNTGG	1 cut(s)	418
BsuRI	GGCC	6 cut(s)	44, 471, 570, 824, 878, 1052
BtgI	CCRYGG	2 cut(s)	45, 891
BtsCI	GGATG	2 cut(s)	31, 378
BtsIMutI	CAGTG	2 cut(s)	602, 736
BveI	ACCTGC	1 cut(s)	431
Cac8I	GCNNGC	2 cut(s)	339, 697
CfoI	GCGC	1 cut(s)	831
Cfr13I	GGNCC	6 cut(s)	469, 470, 559, 822, 839, 1051
CseI	GACGC	1 cut(s)	676
Csp6I	GTAC	5 cut(s)	280, 423, 599, 610, 640
CviAII	CATG	6 cut(s)	40, 46, 122, 274, 819, 892
CviQI	GTAC	5 cut(s)	280, 423, 599, 610, 640
DdeI	CTNAG	2 cut(s)	267, 778
DpnI	GATC	2 cut(s)	193, 272
DpnII	GATC	2 cut(s)	191, 270
DraI	TTTAAA	1 cut(s)	78
EaeI	YGGCCR	2 cut(s)	42, 876
Eam1104I	CTCTTC	4 cut(s)	92, 528, 924, 990
EarI	CTCTTC	4 cut(s)	92, 528, 924, 990
Eco130I	CCWWGG	4 cut(s)	45, 562, 891, 907
Eco24I	GRGCYC	1 cut(s)	473
Eco31I	GGTCTC	2 cut(s)	739, 769
Eco47I	GGWCC	2 cut(s)	559, 839
Eco57I	CTGAAG	1 cut(s)	300
EcoO109I	RGGNCCY	4 cut(s)	469, 559, 839, 1051
EcoRII	CCWGG	1 cut(s)	1026
EcoT14I	CCWWGG	4 cut(s)	45, 562, 891, 907
EcoT38I	GRGCYC	1 cut(s)	473
ErhI	CCWWGG	4 cut(s)	45, 562, 891, 907
FaeI	CATG	6 cut(s)	43, 49, 125, 277, 822, 895
FalI	AAGNNNNNCTT	4 cut(s)	225, 257, 370, 402
FaqI	GGGAC	1 cut(s)	852
FatI	CATG	6 cut(s)	39, 45, 121, 273, 818, 891
Fnu4HI	GCNGC	3 cut(s)	96, 153, 384
FokI	GGATG	2 cut(s)	38, 385
FriOI	GRGCYC	1 cut(s)	473
Fsp4HI	GCNGC	3 cut(s)	96, 153, 384
FspBI	CTAG	1 cut(s)	935
GlaI	GCGC	1 cut(s)	830
GluI	GCNGC	3 cut(s)	96, 153, 384
HaeIII	GGCC	6 cut(s)	44, 471, 570, 824, 878, 1052
HgaI	GACGC	1 cut(s)	676
HhaI	GCGC	1 cut(s)	831
Hin1I	GRCGYC	1 cut(s)	687
Hin1II	CATG	6 cut(s)	43, 49, 125, 277, 822, 895
Hin6I	GCGC	1 cut(s)	829
HinP1I	GCGC	1 cut(s)	829
HinfI	GANTC	1 cut(s)	1010
HphI	GGTGA	4 cut(s)	61, 489, 506, 923
Hpy166II	GTNNAC	3 cut(s)	63, 282, 814
Hpy188I	TCNGA	2 cut(s)	270, 711
Hpy188III	TCNNGA	1 cut(s)	370
Hpy8I	GTNNAC	3 cut(s)	63, 282, 814
Hpy99I	CGWCG	1 cut(s)	692
HpyAV	CCTTC	4 cut(s)	176, 187, 581, 829
HpyCH4III	ACNGT	5 cut(s)	501, 606, 658, 811, 973
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	7 cut(s)	63, 383, 440, 446, 758, 814, 1063
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1040, 1049
HpyF3I	CTNAG	2 cut(s)	267, 778
HpySE526I	ACGT	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	687
Hsp92II	CATG	6 cut(s)	43, 49, 125, 277, 822, 895
HspAI	GCGC	1 cut(s)	829
KpnI	GGTACC	1 cut(s)	602
Kzo9I	GATC	2 cut(s)	191, 270
LmnI	GCTCC	1 cut(s)	941
Lsp1109I	GCAGC	3 cut(s)	107, 139, 395
LweI	GCATC	1 cut(s)	297
MaeI	CTAG	1 cut(s)	935
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	5 cut(s)	17, 49, 454, 850, 911
MalI	GATC	2 cut(s)	193, 272
MboI	GATC	2 cut(s)	191, 270
MboII	GAAGA	8 cut(s)	79, 230, 233, 515, 895, 911, 1007, 1019
MhlI	GDGCHC	4 cut(s)	65, 473, 779, 816
MlsI	TGGCCA	2 cut(s)	44, 878
MluCI	AATT	6 cut(s)	292, 504, 627, 650, 660, 724
MluNI	TGGCCA	2 cut(s)	44, 878
MmeI	TCCRAC	2 cut(s)	329, 919
MnlI	CCTC	7 cut(s)	3, 101, 216, 221, 498, 531, 991
Mox20I	TGGCCA	2 cut(s)	44, 878
MscI	TGGCCA	2 cut(s)	44, 878
MseI	TTAA	3 cut(s)	77, 653, 1074
MslI	CAYNNNNRTG	2 cut(s)	44, 68
Msp20I	TGGCCA	2 cut(s)	44, 878
MspA1I	CMGCKG	1 cut(s)	584
MspR9I	CCNGG	1 cut(s)	1028
MssI	GTTTAAAC	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	1028
MwoI	GCNNNNNNNGC	2 cut(s)	1040, 1049
NcoI	CCATGG	2 cut(s)	45, 891
NdeII	GATC	2 cut(s)	191, 270
NlaIII	CATG	6 cut(s)	43, 49, 125, 277, 822, 895
NlaIV	GGNNCC	5 cut(s)	471, 560, 600, 840, 1053
NmuCI	GTSAC	3 cut(s)	49, 850, 911
OliI	CACNNNNGTG	1 cut(s)	68
PaqCI	CACCTGC	1 cut(s)	431
PcsI	WCGNNNNNNNCGW	1 cut(s)	696
PfeI	GAWTC	1 cut(s)	1010
PflMI	CCANNNNNTGG	1 cut(s)	735
PkrI	GCNGC	3 cut(s)	97, 154, 385
PmeI	GTTTAAAC	1 cut(s)	78
PpuMI	RGGWCCY	2 cut(s)	559, 839
Psp5II	RGGWCCY	2 cut(s)	559, 839
Psp6I	CCWGG	1 cut(s)	1026
PspGI	CCWGG	1 cut(s)	1026
PspN4I	GGNNCC	5 cut(s)	471, 560, 600, 840, 1053
PspOMI	GGGCCC	1 cut(s)	469
PspPI	GGNCC	6 cut(s)	469, 470, 559, 822, 839, 1051
PspPPI	RGGWCCY	2 cut(s)	559, 839
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	5 cut(s)	281, 424, 600, 611, 641
RsaNI	GTAC	5 cut(s)	280, 423, 599, 610, 640
RseI	CAYNNNNRTG	2 cut(s)	44, 68
SaqAI	TTAA	3 cut(s)	77, 653, 1074
SatI	GCNGC	3 cut(s)	96, 153, 384
Sau3AI	GATC	2 cut(s)	191, 270
Sau96I	GGNCC	6 cut(s)	469, 470, 559, 822, 839, 1051
ScrFI	CCNGG	1 cut(s)	1028
SduI	GDGCHC	4 cut(s)	65, 473, 779, 816
SfaNI	GCATC	1 cut(s)	297
SfcI	CTRYAG	2 cut(s)	147, 1014
SinI	GGWCC	2 cut(s)	559, 839
SmiMI	CAYNNNNRTG	2 cut(s)	44, 68
Sse9I	AATT	6 cut(s)	292, 504, 627, 650, 660, 724
SspMI	CTAG	1 cut(s)	935
StyD4I	CCNGG	1 cut(s)	1026
StyI	CCWWGG	4 cut(s)	45, 562, 891, 907
TaaI	ACNGT	5 cut(s)	501, 606, 658, 811, 973
TaiI	ACGT	1 cut(s)	72
TasI	AATT	6 cut(s)	292, 504, 627, 650, 660, 724
TfiI	GAWTC	1 cut(s)	1010
Tru1I	TTAA	3 cut(s)	77, 653, 1074
Tru9I	TTAA	3 cut(s)	77, 653, 1074
TscAI	CASTG	2 cut(s)	609, 736
TseFI	GTSAC	3 cut(s)	49, 850, 911
TseI	GCWGC	3 cut(s)	95, 152, 383
Tsp45I	GTSAC	3 cut(s)	49, 850, 911
TspDTI	ATGAA	6 cut(s)	28, 169, 252, 340, 647, 911
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	2 cut(s)	609, 736
Van91I	CCANNNNNTGG	1 cut(s)	735
VneI	GTGCAC	2 cut(s)	61, 812
VpaK11BI	GGWCC	2 cut(s)	559, 839
XapI	RAATTY	1 cut(s)	724
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XspI	CTAG	1 cut(s)	935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.