Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004267

Physical Location & Seq

Genomic Coordinates Reverse (-)

85575836 .. 85578334

Gene Structure 2499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG634000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCAGGAAGGTCTTGTTACAGAGATGTGCTTCCATTTACAGCCATGGTGACTATGGAGTCCACCAACGTGGGATTGAACACACTGTTCAAAGCTGCAACCATGAGAGGGATGAGCTACCATGTCTTTATTGTCTACTCTTATTCCATAGCTGCTCTTGCTCTTCTTCCAGCTCCCTTCATTTCCCACAGATCAAGGAGGCTTCCTCCTCTCAACTTTTCCATCATGAGCAAAATTCTTCTTCTTGGGCTAATTGGGAGTTCATCTCAGATAATGGGGTTTACAGGAATCAGTTACAGCTCTCCAACGCTTGCTTCTGCTATCAGCAACCTTGTGCCAGCTTTCACTTTCATTCTTGCCATTATTTTCAGGATGGAAAGTGTAGCTTTGAAAAGTAGAAGCAGTCAAGCTAAAATCTTGGGTACTATAGTTTCACTTGCAGGTGCATTTGTGGTGACTTTCTATAAGGGCCCCCGAATTTCCCTCACTAGTCAAACACAATCTCTGATGCTAAACTCAACAGCTTCAAACTCAGACTGGATCATTGGAGGCCTTCTAATAACAGCTGAGTATATATTGGTGACACTTTGGTACATTGTTCAGGCACGAATTATGAAAGAGTATCCAAATGAATTAACTGTGATCTTCTTCTACAATGTTATCGTCAGCATCGTAGCTGCAGTTGTTGGTTTGATTACAGAAAAAAATCCAAATGCTTGGAGGTTGAGACCAGATATGGCATTGGTCTCCATCCTGTGCTCAGGATTACTAAGCTCATTATTGAACAATTCTGTTCACACATGGACCTTGCGCGTGAAGGGGCCTGTGTATGTGACAATGTTCAAGCCATTGTCAATTGCCATTGCTGTTGTCATGGGCGTTACGTTCCTTGGTGATACACTTTGCCTGGGAAGCCTACTTGGAGCATCGATAATATCGATTGGGTTTTATACGGTACTATGGGGAAAAGCTAAAGAAGACGCTGGTGAAGACTCCGGAGCTCATAGCCTGGAGTCACCATCTAGCAACAAGGCCCCTTTATTGCAAACCTATAAAACCGAGAATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

356

Amino Acids

38.58

Weight (kDa)

9.54

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	25 - 153	5.3e-09	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28050 AT3G28060
fragaria_vesca	FvH4_6g50360 FvH4_6g50360 FvH4_6g50360 FvH4_6g50360 FvH4_6g50360
malus_domestica	MD09G1036900.v1.1 MD17G1038300.v1.1
prunus_persica	Prupe.3G280700_v2.0.a1 Prupe.3G280700_v2.0.a1 Prupe.3G280700_v2.0.a1
pyrus_communis	pycom111g02970 pycom17g03450
rosa_chinensis	RchiOBHm_Chr2g0170681 RchiOBHm_Chr2g0170701
rosa_laevigata	RLG00000021975 RLG00000021976
rosa_multiflora	Rmu_sc0003787.1_g000008 Rmu_sc0003787.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081110 Rroxscaffold_2G00081120
rosa_rugosa	Rorug02G0550400 Rorug02G0550500
rosa_samantha	Rh2AG623400 Rh2AG623500 Rh2BG633900 Rh2BG634000 Rh2CG603100 Rh2CG603200
rosa_wichuraiana	Rw2G051630 Rw2G051640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	431
AasI	GACNNNNNNGTC	1 cut(s)	58
Acc36I	ACCTGC	1 cut(s)	431
AccI	GTMKAC	1 cut(s)	135
AccII	CGCG	1 cut(s)	813
AccIII	TCCGGA	1 cut(s)	995
AclWI	GGATC	1 cut(s)	548
AcsI	RAATTY	2 cut(s)	234, 477
AfaI	GTAC	3 cut(s)	424, 593, 957
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	6 cut(s)	79, 91, 391, 528, 784, 844
AhlI	ACTAGT	1 cut(s)	488
AjnI	CCWGG	2 cut(s)	906, 1008
AjuI	GAANNNNNNNTTGG	2 cut(s)	298, 330
AleI	CACNNNNGTG	1 cut(s)	68
Alw21I	GWGCWC	2 cut(s)	761, 1003
Alw26I	GTCTC	2 cut(s)	721, 751
AlwI	GGATC	1 cut(s)	548
Aor13HI	TCCGGA	1 cut(s)	995
AoxI	GGCC	4 cut(s)	469, 550, 821, 1032
ApaI	GGGCCC	1 cut(s)	473
ApeKI	GCWGC	3 cut(s)	95, 152, 677
ApoI	RAATTY	2 cut(s)	234, 477
AspLEI	GCGC	1 cut(s)	813
AspS9I	GGNCC	5 cut(s)	469, 470, 804, 821, 1033
AsuHPI	GGTGA	6 cut(s)	61, 466, 592, 905, 998, 1008
AvaII	GGWCC	1 cut(s)	804
BaeGI	GKGCMC	1 cut(s)	473
BaeI	ACNNNNGTAYC	2 cut(s)	414, 447
BanII	GRGCYC	2 cut(s)	473, 1003
BbsI	GAAGAC	2 cut(s)	984, 996
Bbv12I	GWGCWC	2 cut(s)	761, 1003
BbvI	GCAGC	3 cut(s)	82, 139, 664
BccI	CCATC	4 cut(s)	230, 367, 758, 1027
BciT130I	CCWGG	2 cut(s)	908, 1010
BciVI	GTATCC	1 cut(s)	633
BcoDI	GTCTC	2 cut(s)	721, 751
BcuI	ACTAGT	1 cut(s)	488
BfaI	CTAG	3 cut(s)	489, 1023, 1069
BfmI	CTRYAG	2 cut(s)	426, 678
BfuAI	ACCTGC	1 cut(s)	431
BfuI	GTATCC	1 cut(s)	633
BisI	GCNGC	3 cut(s)	96, 153, 678
BlsI	GCNGC	3 cut(s)	97, 154, 679
Bme1390I	CCNGG	2 cut(s)	908, 1010
Bme18I	GGWCC	1 cut(s)	804
BmgT120I	GGNCC	5 cut(s)	469, 470, 804, 821, 1033
BmiI	GGNNCC	4 cut(s)	471, 472, 822, 1035
BmrFI	CCNGG	2 cut(s)	908, 1010
BmsI	GCATC	3 cut(s)	498, 678, 935
BpiI	GAAGAC	2 cut(s)	984, 996
BplI	GAGNNNNNCTC	4 cut(s)	190, 222, 250, 282
BpmI	CTGGAG	1 cut(s)	1031
Bpu10I	CCTNAGC	1 cut(s)	760
Bsa29I	ATCGAT	2 cut(s)	929, 938
BsaI	GGTCTC	2 cut(s)	721, 751
BsaJI	CCNNGG	3 cut(s)	45, 889, 907
BsaWI	WCCGGW	1 cut(s)	995
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	542
Bse3DI	GCAATG	1 cut(s)	861
BseAI	TCCGGA	1 cut(s)	995
BseBI	CCWGG	2 cut(s)	908, 1010
BseCI	ATCGAT	2 cut(s)	929, 938
BseDI	CCNNGG	3 cut(s)	45, 889, 907
BseGI	GGATG	3 cut(s)	117, 378, 750
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	861
BseMII	CTCAG	4 cut(s)	281, 546, 558, 774
BseNI	ACTGG	1 cut(s)	542
BseRI	GAGGAG	1 cut(s)	198
BseSI	GKGCMC	1 cut(s)	473
BseXI	GCAGC	3 cut(s)	82, 139, 664
Bsh1236I	CGCG	1 cut(s)	813
BshFI	GGCC	4 cut(s)	471, 552, 823, 1034
BshVI	ATCGAT	2 cut(s)	929, 938
BsiHKAI	GWGCWC	2 cut(s)	761, 1003
BsiSI	CCGG	1 cut(s)	996
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	2 cut(s)	721, 751
BsnI	GGCC	4 cut(s)	471, 552, 823, 1034
Bso31I	GGTCTC	2 cut(s)	721, 751
Bsp120I	GGGCCC	1 cut(s)	469
Bsp1286I	GDGCHC	3 cut(s)	473, 761, 1003
Bsp13I	TCCGGA	1 cut(s)	995
Bsp143I	GATC	3 cut(s)	191, 540, 642
Bsp19I	CCATGG	1 cut(s)	45
BspANI	GGCC	4 cut(s)	471, 552, 823, 1034
BspCNI	CTCAG	4 cut(s)	280, 545, 559, 773
BspDI	ATCGAT	2 cut(s)	929, 938
BspEI	TCCGGA	1 cut(s)	995
BspFNI	CGCG	1 cut(s)	813
BspHI	TCATGA	1 cut(s)	225
BspLI	GGNNCC	4 cut(s)	471, 472, 822, 1035
BspMAI	CTGCAG	1 cut(s)	682
BspMI	ACCTGC	1 cut(s)	431
BspPI	GGATC	1 cut(s)	548
BspQI	GCTCTTC	1 cut(s)	168
BspTNI	GGTCTC	2 cut(s)	721, 751
BsrDI	GCAATG	1 cut(s)	861
BsrI	ACTGG	1 cut(s)	542
BssECI	CCNNGG	3 cut(s)	45, 889, 907
BssMI	GATC	3 cut(s)	191, 540, 642
BssT1I	CCWWGG	2 cut(s)	45, 889
Bst2UI	CCWGG	2 cut(s)	908, 1010
Bst4CI	ACNGT	3 cut(s)	87, 640, 955
Bst6I	CTCTTC	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	312, 339
BstDEI	CTNAG	5 cut(s)	267, 532, 567, 760, 770
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	3 cut(s)	117, 378, 750
BstFNI	CGCG	1 cut(s)	813
BstHHI	GCGC	1 cut(s)	813
BstKTI	GATC	3 cut(s)	194, 543, 645
BstMAI	GTCTC	2 cut(s)	721, 751
BstMBI	GATC	3 cut(s)	191, 540, 642
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 912
BstNI	CCWGG	2 cut(s)	908, 1010
BstSCI	CCNGG	2 cut(s)	906, 1008
BstSFI	CTRYAG	2 cut(s)	426, 678
BstSLI	GKGCMC	1 cut(s)	473
BstUI	CGCG	1 cut(s)	813
BstV1I	GCAGC	3 cut(s)	82, 139, 664
BstV2I	GAAGAC	2 cut(s)	984, 996
BstXI	CCANNNNNNTGG	2 cut(s)	70, 717
Bsu15I	ATCGAT	2 cut(s)	929, 938
BsuI	GTATCC	1 cut(s)	633
BsuRI	GGCC	4 cut(s)	471, 552, 823, 1034
BsuTUI	ATCGAT	2 cut(s)	929, 938
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	3 cut(s)	117, 378, 750
BtsIMutI	CAGTG	1 cut(s)	83
BveI	ACCTGC	1 cut(s)	431
Cac8I	GCNNGC	2 cut(s)	312, 339
CciI	TCATGA	1 cut(s)	225
CfoI	GCGC	1 cut(s)	813
Cfr13I	GGNCC	5 cut(s)	469, 470, 804, 821, 1033
ClaI	ATCGAT	2 cut(s)	929, 938
CseI	GACGC	1 cut(s)	989
Csp6I	GTAC	3 cut(s)	423, 592, 956
CviAII	CATG	6 cut(s)	46, 103, 122, 226, 801, 874
CviQI	GTAC	3 cut(s)	423, 592, 956
DdeI	CTNAG	5 cut(s)	267, 532, 567, 760, 770
DpnI	GATC	3 cut(s)	193, 542, 644
DpnII	GATC	3 cut(s)	191, 540, 642
DrdI	GACNNNNNNGTC	1 cut(s)	58
DseDI	GACNNNNNNGTC	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Ecl136II	GAGCTC	1 cut(s)	1001
Eco130I	CCWWGG	2 cut(s)	45, 889
Eco147I	AGGCCT	1 cut(s)	552
Eco24I	GRGCYC	2 cut(s)	473, 1003
Eco31I	GGTCTC	2 cut(s)	721, 751
Eco47I	GGWCC	1 cut(s)	804
Eco53kI	GAGCTC	1 cut(s)	1001
EcoICRI	GAGCTC	1 cut(s)	1001
EcoO109I	RGGNCCY	4 cut(s)	469, 470, 821, 1033
EcoRII	CCWGG	2 cut(s)	906, 1008
EcoT14I	CCWWGG	2 cut(s)	45, 889
EcoT38I	GRGCYC	2 cut(s)	473, 1003
ErhI	CCWWGG	2 cut(s)	45, 889
FaeI	CATG	6 cut(s)	49, 106, 125, 229, 804, 877
FalI	AAGNNNNNCTT	2 cut(s)	370, 402
FatI	CATG	6 cut(s)	45, 102, 121, 225, 800, 873
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	96, 153, 678
FokI	GGATG	3 cut(s)	124, 385, 737
FriOI	GRGCYC	2 cut(s)	473, 1003
Fsp4HI	GCNGC	3 cut(s)	96, 153, 678
FspBI	CTAG	3 cut(s)	489, 1023, 1069
GlaI	GCGC	1 cut(s)	812
GluI	GCNGC	3 cut(s)	96, 153, 678
GsuI	CTGGAG	1 cut(s)	1031
HaeIII	GGCC	4 cut(s)	471, 552, 823, 1034
HapII	CCGG	1 cut(s)	996
HgaI	GACGC	1 cut(s)	989
HhaI	GCGC	1 cut(s)	813
Hin1II	CATG	6 cut(s)	49, 106, 125, 229, 804, 877
Hin6I	GCGC	1 cut(s)	811
HinP1I	GCGC	1 cut(s)	811
HinfI	GANTC	4 cut(s)	59, 288, 992, 1013
HpaII	CCGG	1 cut(s)	996
HphI	GGTGA	6 cut(s)	61, 466, 592, 905, 998, 1008
Hpy166II	GTNNAC	4 cut(s)	63, 136, 282, 796
Hpy188I	TCNGA	3 cut(s)	270, 507, 535
Hpy188III	TCNNGA	4 cut(s)	226, 370, 762, 996
Hpy8I	GTNNAC	4 cut(s)	63, 136, 282, 796
HpyAV	CCTTC	4 cut(s)	3, 187, 563, 811
HpyCH4III	ACNGT	3 cut(s)	87, 640, 955
HpyCH4IV	ACGT	2 cut(s)	69, 884
HpyCH4V	TGCA	5 cut(s)	98, 440, 446, 680, 1045
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 912
HpyF3I	CTNAG	5 cut(s)	267, 532, 567, 760, 770
HpySE526I	ACGT	2 cut(s)	69, 884
Hsp92II	CATG	6 cut(s)	49, 106, 125, 229, 804, 877
HspAI	GCGC	1 cut(s)	811
Kpn2I	TCCGGA	1 cut(s)	995
Kzo9I	GATC	3 cut(s)	191, 540, 642
LguI	GCTCTTC	1 cut(s)	168
LmnI	GCTCC	3 cut(s)	178, 923, 998
Lsp1109I	GCAGC	3 cut(s)	82, 139, 664
LweI	GCATC	3 cut(s)	498, 678, 935
MaeI	CTAG	3 cut(s)	489, 1023, 1069
MaeII	ACGT	2 cut(s)	69, 884
MaeIII	GTNAC	8 cut(s)	17, 49, 293, 454, 580, 832, 880, 1014
MalI	GATC	3 cut(s)	193, 542, 644
MboI	GATC	3 cut(s)	191, 540, 642
MboII	GAAGA	8 cut(s)	155, 158, 230, 233, 637, 640, 989, 1001
MfeI	CAATTG	1 cut(s)	855
MhlI	GDGCHC	3 cut(s)	473, 761, 1003
MluCI	AATT	7 cut(s)	234, 252, 477, 609, 632, 787, 855
MlyI	GAGTC	3 cut(s)	68, 986, 1022
MmeI	TCCRAC	1 cut(s)	329
MnlI	CCTC	7 cut(s)	101, 192, 216, 219, 494, 542, 714
MroI	TCCGGA	1 cut(s)	995
MseI	TTAA	1 cut(s)	635
MslI	CAYNNNNRTG	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	566
MspI	CCGG	1 cut(s)	996
MspR9I	CCNGG	2 cut(s)	908, 1010
MunI	CAATTG	1 cut(s)	855
MvaI	CCWGG	2 cut(s)	908, 1010
MvnI	CGCG	1 cut(s)	813
MwoI	GCNNNNNNNGC	2 cut(s)	158, 912
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	3 cut(s)	191, 540, 642
NlaIII	CATG	6 cut(s)	49, 106, 125, 229, 804, 877
NlaIV	GGNNCC	4 cut(s)	471, 472, 822, 1035
NmuCI	GTSAC	5 cut(s)	49, 454, 580, 832, 1014
OliI	CACNNNNGTG	1 cut(s)	68
PagI	TCATGA	1 cut(s)	225
PaqCI	CACCTGC	1 cut(s)	431
PceI	AGGCCT	1 cut(s)	552
PciSI	GCTCTTC	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	2 cut(s)	669, 935
PfeI	GAWTC	1 cut(s)	288
PkrI	GCNGC	3 cut(s)	97, 154, 679
PleI	GAGTC	3 cut(s)	67, 986, 1021
PpsI	GAGTC	3 cut(s)	67, 986, 1021
Psp124BI	GAGCTC	1 cut(s)	1003
Psp6I	CCWGG	2 cut(s)	906, 1008
PspGI	CCWGG	2 cut(s)	906, 1008
PspN4I	GGNNCC	4 cut(s)	471, 472, 822, 1035
PspOMI	GGGCCC	1 cut(s)	469
PspPI	GGNCC	5 cut(s)	469, 470, 804, 821, 1033
PstI	CTGCAG	1 cut(s)	682
PvuII	CAGCTG	1 cut(s)	566
RsaI	GTAC	3 cut(s)	424, 593, 957
RsaNI	GTAC	3 cut(s)	423, 592, 956
RseI	CAYNNNNRTG	1 cut(s)	68
SacI	GAGCTC	1 cut(s)	1003
SapI	GCTCTTC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	635
SatI	GCNGC	3 cut(s)	96, 153, 678
Sau3AI	GATC	3 cut(s)	191, 540, 642
Sau96I	GGNCC	5 cut(s)	469, 470, 804, 821, 1033
SchI	GAGTC	3 cut(s)	68, 986, 1022
ScrFI	CCNGG	2 cut(s)	908, 1010
SduI	GDGCHC	3 cut(s)	473, 761, 1003
SfaNI	GCATC	3 cut(s)	498, 678, 935
SfcI	CTRYAG	2 cut(s)	426, 678
SinI	GGWCC	1 cut(s)	804
SmiMI	CAYNNNNRTG	1 cut(s)	68
SpeI	ACTAGT	1 cut(s)	488
Sse9I	AATT	7 cut(s)	234, 252, 477, 609, 632, 787, 855
SseBI	AGGCCT	1 cut(s)	552
SspMI	CTAG	3 cut(s)	489, 1023, 1069
SstI	GAGCTC	1 cut(s)	1003
StuI	AGGCCT	1 cut(s)	552
StyD4I	CCNGG	2 cut(s)	906, 1008
StyI	CCWWGG	2 cut(s)	45, 889
TaaI	ACNGT	3 cut(s)	87, 640, 955
TaiI	ACGT	2 cut(s)	72, 887
TaqI	TCGA	2 cut(s)	929, 938
TasI	AATT	7 cut(s)	234, 252, 477, 609, 632, 787, 855
TfiI	GAWTC	1 cut(s)	288
Tru1I	TTAA	1 cut(s)	635
Tru9I	TTAA	1 cut(s)	635
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	5 cut(s)	49, 454, 580, 832, 1014
TseI	GCWGC	3 cut(s)	95, 152, 677
Tsp45I	GTSAC	5 cut(s)	49, 454, 580, 832, 1014
TspDTI	ATGAA	5 cut(s)	169, 252, 340, 629, 645
TspRI	CASTG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	804
XapI	RAATTY	2 cut(s)	234, 477
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	3 cut(s)	489, 1023, 1069

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.