Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004267

Physical Location & Seq

Genomic Coordinates Reverse (-)

37498457 .. 37501448

Gene Structure 2992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g50360.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGGGTATACAGGAATCAGCTACAGCTCTCCCACGCTTGCTTCTGCTATCAGCAACCTTGTGCCAGCTTTCACTTTCATTCTTGCCATCATTTTCAGGCTGGAAGAAGTAGCTTTAAAAAGTAGAAGCAGCCAAGCTAAAATCATCGGTACTATAGTTTCACTTGCAGGTGCATTTGTGGTAACTCTCTATAAGGGTCCCCAAATTTCCTTCACTGGTCAAACACAATCTCTTTTGCTAAACTCACCAGCTTCAAACCCAGACTGGGTCATTGGAGGCCTTCTGATAACAGCCGAGTATATATTGGTGACACTATGGTACATTGTTCAGGCACGAATTATGAAAGAGTACCCAAATGAGTTAACTGTGATCTTCTTCTACAATGTAATAGTCAGCATTGTAGCTGCCATTGTTGGTTTGATTACAGAAAGGGATCCAAATGCTTGGAGGTTGAGACCTGATATGTCATTGGTCTCCATCCTGTGCTCAGGATTACTAAACTCATTGTTGAACAATTCTGTTCACACGTGGACCTTGCGTGTGAAGGGACCTGTGTATGTGACAATGTTCAAGCCATTGTCGATTGCCATTGCTGTTGTCATGGGCGTAACGTTCCTTGGTGATACACTTTATCTGGGAAGCCTACTTGGAGCAGCAATTATATCTGTAGGATTCTATACAGTACTATGGGGAAAAGCTAAAGAAGAGAGTGGTGACGACTCCGGAGCTGATAGCCTGGAATCACCATCTAGCAACAAGGCTCCTTTATTGCAAACCTATAAAACCGAGAATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

266

Amino Acids

28.65

Weight (kDa)

6.59

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	25 - 153	1.4e-09	EamA-like transporter family
UAA	PF08449	131 - 272	9.9e-06	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28050 AT3G28060
fragaria_vesca	FvH4_6g50360 FvH4_6g50360 FvH4_6g50360 FvH4_6g50360 FvH4_6g50360
malus_domestica	MD09G1036900.v1.1 MD17G1038300.v1.1
prunus_persica	Prupe.3G280700_v2.0.a1 Prupe.3G280700_v2.0.a1 Prupe.3G280700_v2.0.a1
pyrus_communis	pycom111g02970 pycom17g03450
rosa_chinensis	RchiOBHm_Chr2g0170681 RchiOBHm_Chr2g0170701
rosa_laevigata	RLG00000021975 RLG00000021976
rosa_multiflora	Rmu_sc0003787.1_g000008 Rmu_sc0003787.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081110 Rroxscaffold_2G00081120
rosa_rugosa	Rorug02G0550400 Rorug02G0550500
rosa_samantha	Rh2AG623400 Rh2AG623500 Rh2BG633900 Rh2BG634000 Rh2CG603100 Rh2CG603200
rosa_wichuraiana	Rw2G051630 Rw2G051640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	158
Acc36I	ACCTGC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	8
AccIII	TCCGGA	1 cut(s)	722
AclI	AACGTT	1 cut(s)	611
AclWI	GGATC	2 cut(s)	428, 441
AcsI	RAATTY	1 cut(s)	204
AcvI	CACGTG	1 cut(s)	528
AfaI	GTAC	4 cut(s)	151, 320, 350, 684
AfiI	CCNNNNNNNGG	1 cut(s)	265
AflIII	ACRYGT	1 cut(s)	525
AgsI	TTSAA	3 cut(s)	255, 511, 571
AjnI	CCWGG	1 cut(s)	735
AluBI	AGCT	9 cut(s)	21, 27, 68, 113, 137, 251, 404, 698, 728
AluI	AGCT	9 cut(s)	21, 27, 68, 113, 137, 251, 404, 698, 728
Alw21I	GWGCWC	1 cut(s)	488
Alw26I	GTCTC	2 cut(s)	448, 478
AlwI	GGATC	2 cut(s)	428, 441
Aor13HI	TCCGGA	1 cut(s)	722
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	3 cut(s)	129, 404, 653
ApoI	RAATTY	1 cut(s)	204
AspS9I	GGNCC	3 cut(s)	197, 531, 548
AsuHPI	GGTGA	5 cut(s)	237, 319, 632, 725, 735
AvaII	GGWCC	3 cut(s)	197, 531, 548
BaeI	ACNNNNGTAYC	2 cut(s)	141, 174
BamHI	GGATCC	1 cut(s)	433
BbrPI	CACGTG	1 cut(s)	528
Bbv12I	GWGCWC	1 cut(s)	488
BbvI	GCAGC	3 cut(s)	141, 391, 665
BccI	CCATC	3 cut(s)	95, 485, 754
BciT130I	CCWGG	1 cut(s)	737
BcoDI	GTCTC	2 cut(s)	448, 478
BfaI	CTAG	2 cut(s)	750, 796
BfmI	CTRYAG	3 cut(s)	22, 153, 666
BfuAI	ACCTGC	1 cut(s)	158
BisI	GCNGC	3 cut(s)	130, 405, 654
BlsI	GCNGC	3 cut(s)	131, 406, 655
BmcAI	AGTACT	1 cut(s)	684
Bme1390I	CCNGG	1 cut(s)	737
Bme18I	GGWCC	3 cut(s)	197, 531, 548
BmgT120I	GGNCC	3 cut(s)	197, 531, 548
BmiI	GGNNCC	5 cut(s)	198, 199, 435, 549, 762
BmrFI	CCNGG	1 cut(s)	737
BmrI	ACTGGG	1 cut(s)	274
BmuI	ACTGGG	1 cut(s)	274
Bpu10I	CCTNAGC	1 cut(s)	487
BsaAI	YACGTR	1 cut(s)	528
BsaI	GGTCTC	2 cut(s)	448, 478
BsaJI	CCNNGG	1 cut(s)	616
BsaWI	WCCGGW	1 cut(s)	722
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	2 cut(s)	220, 269
Bse3DI	GCAATG	1 cut(s)	588
BseAI	TCCGGA	1 cut(s)	722
BseBI	CCWGG	1 cut(s)	737
BseDI	CCNNGG	1 cut(s)	616
BseGI	GGATG	1 cut(s)	477
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	2 cut(s)	220, 269
BseXI	GCAGC	3 cut(s)	141, 391, 665
BshFI	GGCC	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	488
BsiSI	CCGG	1 cut(s)	723
BslFI	GGGAC	2 cut(s)	183, 561
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	2 cut(s)	448, 478
BsmFI	GGGAC	2 cut(s)	183, 561
BsnI	GGCC	1 cut(s)	279
Bso31I	GGTCTC	2 cut(s)	448, 478
Bsp1286I	GDGCHC	1 cut(s)	488
Bsp13I	TCCGGA	1 cut(s)	722
Bsp143I	GATC	2 cut(s)	369, 433
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	1 cut(s)	500
BspEI	TCCGGA	1 cut(s)	722
BspLI	GGNNCC	5 cut(s)	198, 199, 435, 549, 762
BspMI	ACCTGC	1 cut(s)	158
BspPI	GGATC	2 cut(s)	428, 441
BspTNI	GGTCTC	2 cut(s)	448, 478
BsrDI	GCAATG	1 cut(s)	588
BsrI	ACTGG	2 cut(s)	220, 269
BssECI	CCNNGG	1 cut(s)	616
BssMI	GATC	2 cut(s)	369, 433
BssNAI	GTATAC	1 cut(s)	9
BssT1I	CCWWGG	1 cut(s)	616
Bst1107I	GTATAC	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	737
Bst4CI	ACNGT	2 cut(s)	367, 682
Bst6I	CTCTTC	1 cut(s)	699
BstBAI	YACGTR	1 cut(s)	528
BstC8I	GCNNGC	2 cut(s)	39, 66
BstDEI	CTNAG	1 cut(s)	487
BstF5I	GGATG	1 cut(s)	477
BstKTI	GATC	2 cut(s)	372, 436
BstMAI	GTCTC	2 cut(s)	448, 478
BstMBI	GATC	2 cut(s)	369, 433
BstNI	CCWGG	1 cut(s)	737
BstSCI	CCNGG	1 cut(s)	735
BstSFI	CTRYAG	3 cut(s)	22, 153, 666
BstV1I	GCAGC	3 cut(s)	141, 391, 665
BstX2I	RGATCY	1 cut(s)	433
BstXI	CCANNNNNNTGG	1 cut(s)	444
BstYI	RGATCY	1 cut(s)	433
BstZ17I	GTATAC	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	477
BtsIMutI	CAGTG	1 cut(s)	213
BveI	ACCTGC	1 cut(s)	158
Cac8I	GCNNGC	2 cut(s)	39, 66
Cfr13I	GGNCC	3 cut(s)	197, 531, 548
Csp6I	GTAC	4 cut(s)	150, 319, 349, 683
CviAII	CATG	1 cut(s)	601
CviQI	GTAC	4 cut(s)	150, 319, 349, 683
DdeI	CTNAG	1 cut(s)	487
DpnI	GATC	2 cut(s)	371, 435
DpnII	GATC	2 cut(s)	369, 433
DraI	TTTAAA	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	699
EarI	CTCTTC	1 cut(s)	699
Eco130I	CCWWGG	1 cut(s)	616
Eco147I	AGGCCT	1 cut(s)	279
Eco31I	GGTCTC	2 cut(s)	448, 478
Eco47I	GGWCC	3 cut(s)	197, 531, 548
Eco72I	CACGTG	1 cut(s)	528
EcoO109I	RGGNCCY	2 cut(s)	197, 548
EcoRII	CCWGG	1 cut(s)	735
EcoT14I	CCWWGG	1 cut(s)	616
ErhI	CCWWGG	1 cut(s)	616
FaeI	CATG	1 cut(s)	604
FaqI	GGGAC	2 cut(s)	183, 561
FatI	CATG	1 cut(s)	600
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	3 cut(s)	130, 405, 654
FokI	GGATG	1 cut(s)	464
Fsp4HI	GCNGC	3 cut(s)	130, 405, 654
FspBI	CTAG	2 cut(s)	750, 796
GluI	GCNGC	3 cut(s)	130, 405, 654
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	1 cut(s)	723
Hin1II	CATG	1 cut(s)	604
HincII	GTYRAC	1 cut(s)	363
HindII	GTYRAC	1 cut(s)	363
HinfI	GANTC	4 cut(s)	15, 672, 719, 740
HpaI	GTTAAC	1 cut(s)	363
HpaII	CCGG	1 cut(s)	723
HphI	GGTGA	5 cut(s)	237, 319, 632, 725, 735
Hpy166II	GTNNAC	4 cut(s)	9, 363, 523, 531
Hpy188I	TCNGA	1 cut(s)	285
Hpy188III	TCNNGA	2 cut(s)	489, 723
Hpy8I	GTNNAC	4 cut(s)	9, 363, 523, 531
HpyAV	CCTTC	3 cut(s)	220, 290, 538
HpyCH4III	ACNGT	2 cut(s)	367, 682
HpyCH4IV	ACGT	2 cut(s)	527, 611
HpyCH4V	TGCA	3 cut(s)	167, 173, 772
HpyF3I	CTNAG	1 cut(s)	487
HpySE526I	ACGT	2 cut(s)	527, 611
Hsp92II	CATG	1 cut(s)	604
KflI	GGGWCCC	1 cut(s)	197
Kpn2I	TCCGGA	1 cut(s)	722
KspAI	GTTAAC	1 cut(s)	363
Kzo9I	GATC	2 cut(s)	369, 433
LmnI	GCTCC	3 cut(s)	650, 725, 766
Lsp1109I	GCAGC	3 cut(s)	141, 391, 665
MaeI	CTAG	2 cut(s)	750, 796
MaeII	ACGT	2 cut(s)	527, 611
MaeIII	GTNAC	5 cut(s)	181, 307, 559, 607, 713
MalI	GATC	2 cut(s)	371, 435
MboI	GATC	2 cut(s)	369, 433
MboII	GAAGA	4 cut(s)	116, 364, 367, 716
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	1 cut(s)	488
MluCI	AATT	4 cut(s)	204, 336, 514, 657
MlyI	GAGTC	1 cut(s)	713
MnlI	CCTC	2 cut(s)	269, 441
MroI	TCCGGA	1 cut(s)	722
MseI	TTAA	2 cut(s)	116, 362
MspI	CCGG	1 cut(s)	723
MspR9I	CCNGG	1 cut(s)	737
MvaI	CCWGG	1 cut(s)	737
NdeII	GATC	2 cut(s)	369, 433
NlaIII	CATG	1 cut(s)	604
NlaIV	GGNNCC	5 cut(s)	198, 199, 435, 549, 762
NmeAIII	GCCGAG	1 cut(s)	319
NmuCI	GTSAC	3 cut(s)	307, 559, 713
PaqCI	CACCTGC	1 cut(s)	158
PceI	AGGCCT	1 cut(s)	279
PfeI	GAWTC	3 cut(s)	15, 672, 740
PflFI	GACNNNGTC	1 cut(s)	266
PkrI	GCNGC	3 cut(s)	131, 406, 655
PleI	GAGTC	1 cut(s)	713
PmaCI	CACGTG	1 cut(s)	528
PmlI	CACGTG	1 cut(s)	528
PpsI	GAGTC	1 cut(s)	713
Ppu21I	YACGTR	1 cut(s)	528
PpuMI	RGGWCCY	2 cut(s)	197, 548
Psp1406I	AACGTT	1 cut(s)	611
Psp5II	RGGWCCY	2 cut(s)	197, 548
Psp6I	CCWGG	1 cut(s)	735
PspCI	CACGTG	1 cut(s)	528
PspGI	CCWGG	1 cut(s)	735
PspN4I	GGNNCC	5 cut(s)	198, 199, 435, 549, 762
PspPI	GGNCC	3 cut(s)	197, 531, 548
PspPPI	RGGWCCY	2 cut(s)	197, 548
PsuI	RGATCY	1 cut(s)	433
PsyI	GACNNNGTC	1 cut(s)	266
RsaI	GTAC	4 cut(s)	151, 320, 350, 684
RsaNI	GTAC	4 cut(s)	150, 319, 349, 683
SaqAI	TTAA	2 cut(s)	116, 362
SatI	GCNGC	3 cut(s)	130, 405, 654
Sau3AI	GATC	2 cut(s)	369, 433
Sau96I	GGNCC	3 cut(s)	197, 531, 548
ScaI	AGTACT	1 cut(s)	684
SchI	GAGTC	1 cut(s)	713
ScrFI	CCNGG	1 cut(s)	737
SduI	GDGCHC	1 cut(s)	488
SfcI	CTRYAG	3 cut(s)	22, 153, 666
SinI	GGWCC	3 cut(s)	197, 531, 548
Sse9I	AATT	4 cut(s)	204, 336, 514, 657
SseBI	AGGCCT	1 cut(s)	279
SspMI	CTAG	2 cut(s)	750, 796
StuI	AGGCCT	1 cut(s)	279
StyD4I	CCNGG	1 cut(s)	735
StyI	CCWWGG	1 cut(s)	616
TaaI	ACNGT	2 cut(s)	367, 682
TaiI	ACGT	2 cut(s)	530, 614
TaqI	TCGA	1 cut(s)	581
TasI	AATT	4 cut(s)	204, 336, 514, 657
TatI	WGTACW	1 cut(s)	682
TfiI	GAWTC	3 cut(s)	15, 672, 740
Tru1I	TTAA	2 cut(s)	116, 362
Tru9I	TTAA	2 cut(s)	116, 362
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	3 cut(s)	307, 559, 713
TseI	GCWGC	3 cut(s)	129, 404, 653
Tsp45I	GTSAC	3 cut(s)	307, 559, 713
TspDTI	ATGAA	2 cut(s)	67, 356
TspRI	CASTG	1 cut(s)	220
Tth111I	GACNNNGTC	1 cut(s)	266
VpaK11BI	GGWCC	3 cut(s)	197, 531, 548
XapI	RAATTY	1 cut(s)	204
XmiI	GTMKAC	1 cut(s)	8
XspI	CTAG	2 cut(s)	750, 796
ZrmI	AGTACT	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.