Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003787.1

Orthogroup ID

OG0004267

Physical Location & Seq

Genomic Coordinates Forward (+)

44471 .. 47146

Gene Structure 2676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003787.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

atggcaggaaggtcttgttacagagatgtcctgccatttacagccatggtgactatggagtccatggacgtgggcttgaacacactgttcaaagctgcaacaatgacaggaatgagctaccatgtctttattgcctacacttactccatagctgctcttgctcttgttccagctcctttcatctcccacagatcaaggaggcttcctcccctcaacttttccattatgagcaaaattcttcttcttgggctaattgggagctcatctcagataatggggtatgcaggaatcaattacagctctccaatgctttattctgctatcagcaaccttctgccagctttcactttcattcttgccatcattttcaggttggaaactgtagcattgaaaaccagaagcactcaagctaaaattgttggtactatagtttcacttgcaggtgcattcgtggtgactctatataagggcccccgaatttccctcactggccgaacccaatctcttttgctaaactcaacaccttcaaaatcaaactggatcattggaggccttctgataacagcccagtatatattggtgacactttggtacattgttctggcacaaattatgaaagagtacccaaatgaattaactgtgatcttcttctacaatgttgtggtcagcatcgtagctgtagttgttggtttgattacagaaaaaaatccaaatgcttggagattgagacctgatatggcattggtatccatcctgtgctcaggactactaaactcattattgaacaataccgttcacacatggaccttgcgcttgaagggacctgtgtatgtgacaatgttcaagccattgtcgattgccattgctgttgtcatgggcgtaacgttccttggtgatacacttcatctgggaagcctacttggagcaacaattatatcagttgggttttacacggtgctgtggggaaaagctaaagaagagacttgtgaagactctggagctgatagcctggaatcaccatctagaaataaggccccctcctcgttgcatcttttttctcattttgcagcctacttggagcaacaattatatcagttgggttttacacggtactgtggggaaaagctaaagaagagacttgtgaagactctggagctgatagcctggaatcaccatctagaaataaggcccccttattgcaaacctacaaaacggagaatgtctagaccaaaatgtgtagcaaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

415

Amino Acids

45.91

Weight (kDa)

9.76

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28050 AT3G28060
fragaria_vesca	FvH4_6g50360 FvH4_6g50360 FvH4_6g50360 FvH4_6g50360 FvH4_6g50360
malus_domestica	MD09G1036900.v1.1 MD17G1038300.v1.1
prunus_persica	Prupe.3G280700_v2.0.a1 Prupe.3G280700_v2.0.a1 Prupe.3G280700_v2.0.a1
pyrus_communis	pycom111g02970 pycom17g03450
rosa_chinensis	RchiOBHm_Chr2g0170681 RchiOBHm_Chr2g0170701
rosa_laevigata	RLG00000021975 RLG00000021976
rosa_multiflora	Rmu_sc0003787.1_g000008 Rmu_sc0003787.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081110 Rroxscaffold_2G00081120
rosa_rugosa	Rorug02G0550400 Rorug02G0550500
rosa_samantha	Rh2AG623400 Rh2AG623500 Rh2BG633900 Rh2BG634000 Rh2CG603100 Rh2CG603200
rosa_wichuraiana	Rw2G051630 Rw2G051640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	431
AasI	GACNNNNNNGTC	1 cut(s)	58
Acc36I	ACCTGC	1 cut(s)	431
AclI	AACGTT	1 cut(s)	884
AclWI	GGATC	1 cut(s)	548
AcoI	YGGCCR	1 cut(s)	490
AcsI	RAATTY	2 cut(s)	234, 477
AfaI	GTAC	4 cut(s)	424, 593, 623, 1112
AgsI	TTSAA	7 cut(s)	79, 91, 391, 528, 784, 817, 844
AjiI	CACGTC	1 cut(s)	70
AjnI	CCWGG	2 cut(s)	1008, 1163
AjuI	GAANNNNNNNTTGG	2 cut(s)	298, 330
Alw21I	GWGCWC	2 cut(s)	263, 761
Alw26I	GTCTC	3 cut(s)	721, 974, 1129
AlwI	GGATC	1 cut(s)	548
AoxI	GGCC	5 cut(s)	469, 490, 550, 1032, 1187
ApaI	GGGCCC	1 cut(s)	473
ApeKI	GCWGC	3 cut(s)	95, 152, 1067
ApoI	RAATTY	2 cut(s)	234, 477
AspLEI	GCGC	1 cut(s)	813
AspS9I	GGNCC	6 cut(s)	469, 470, 804, 821, 1033, 1188
AsuHPI	GGTGA	6 cut(s)	61, 466, 592, 905, 1008, 1163
AvaII	GGWCC	2 cut(s)	804, 821
BaeGI	GKGCMC	1 cut(s)	473
BaeI	ACNNNNGTAYC	2 cut(s)	414, 447
BanII	GRGCYC	2 cut(s)	263, 473
BbsI	GAAGAC	2 cut(s)	996, 1151
Bbv12I	GWGCWC	2 cut(s)	263, 761
BbvI	GCAGC	3 cut(s)	82, 139, 1079
BccI	CCATC	4 cut(s)	368, 758, 1027, 1182
BciT130I	CCWGG	2 cut(s)	1010, 1165
BciVI	GTATCC	1 cut(s)	757
BcoDI	GTCTC	3 cut(s)	721, 974, 1129
BfaI	CTAG	4 cut(s)	1023, 1178, 1224, 1246
BfmI	CTRYAG	3 cut(s)	381, 426, 678
BfuAI	ACCTGC	1 cut(s)	431
BfuI	GTATCC	1 cut(s)	757
BisI	GCNGC	3 cut(s)	96, 153, 1068
BlsI	GCNGC	3 cut(s)	97, 154, 1069
Bme1390I	CCNGG	2 cut(s)	1010, 1165
Bme18I	GGWCC	2 cut(s)	804, 821
BmgBI	CACGTC	1 cut(s)	70
BmgT120I	GGNCC	6 cut(s)	469, 470, 804, 821, 1033, 1188
BmiI	GGNNCC	5 cut(s)	471, 472, 822, 1035, 1190
BmrFI	CCNGG	2 cut(s)	1010, 1165
BmrI	ACTGGG	1 cut(s)	562
BmsI	GCATC	2 cut(s)	678, 1057
BmuI	ACTGGG	1 cut(s)	562
BpiI	GAAGAC	2 cut(s)	996, 1151
BplI	GAGNNNNNCTC	4 cut(s)	190, 222, 250, 282
BpmI	CTGGAG	2 cut(s)	1017, 1172
Bpu10I	CCTNAGC	1 cut(s)	760
BpuEI	CTTGAG	1 cut(s)	390
BsaI	GGTCTC	1 cut(s)	721
BsaJI	CCNNGG	3 cut(s)	45, 63, 889
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bse1I	ACTGG	3 cut(s)	493, 542, 568
Bse3DI	GCAATG	1 cut(s)	861
BseBI	CCWGG	2 cut(s)	1010, 1165
BseDI	CCNNGG	3 cut(s)	45, 63, 889
BseGI	GGATG	1 cut(s)	750
BseMI	GCAATG	1 cut(s)	861
BseMII	CTCAG	2 cut(s)	281, 774
BseNI	ACTGG	3 cut(s)	493, 542, 568
BseRI	GAGGAG	1 cut(s)	1030
BseSI	GKGCMC	1 cut(s)	473
BseXI	GCAGC	3 cut(s)	82, 139, 1079
BshFI	GGCC	5 cut(s)	471, 492, 552, 1034, 1189
BsiHKAI	GWGCWC	2 cut(s)	263, 761
BslFI	GGGAC	1 cut(s)	834
BsmAI	GTCTC	3 cut(s)	721, 974, 1129
BsmFI	GGGAC	1 cut(s)	834
BsmI	GAATGC	1 cut(s)	446
BsnI	GGCC	5 cut(s)	471, 492, 552, 1034, 1189
Bso31I	GGTCTC	1 cut(s)	721
Bsp120I	GGGCCC	1 cut(s)	469
Bsp1286I	GDGCHC	3 cut(s)	263, 473, 761
Bsp143I	GATC	3 cut(s)	191, 540, 642
Bsp19I	CCATGG	2 cut(s)	45, 63
BspANI	GGCC	5 cut(s)	471, 492, 552, 1034, 1189
BspCNI	CTCAG	2 cut(s)	280, 773
BspLI	GGNNCC	5 cut(s)	471, 472, 822, 1035, 1190
BspMI	ACCTGC	1 cut(s)	431
BspPI	GGATC	1 cut(s)	548
BspTNI	GGTCTC	1 cut(s)	721
BsrDI	GCAATG	1 cut(s)	861
BsrI	ACTGG	3 cut(s)	493, 542, 568
BssECI	CCNNGG	3 cut(s)	45, 63, 889
BssMI	GATC	3 cut(s)	191, 540, 642
BssT1I	CCWWGG	3 cut(s)	45, 63, 889
Bst2UI	CCWGG	2 cut(s)	1010, 1165
Bst4CI	ACNGT	7 cut(s)	87, 382, 640, 793, 955, 1110, 1115
Bst6I	CTCTTC	2 cut(s)	972, 1127
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	2 cut(s)	267, 760
BstDSI	CCRYGG	2 cut(s)	45, 63
BstF5I	GGATG	1 cut(s)	750
BstHHI	GCGC	1 cut(s)	813
BstKTI	GATC	3 cut(s)	194, 543, 645
BstMAI	GTCTC	3 cut(s)	721, 974, 1129
BstMBI	GATC	3 cut(s)	191, 540, 642
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	2 cut(s)	1010, 1165
BstSCI	CCNGG	2 cut(s)	1008, 1163
BstSFI	CTRYAG	3 cut(s)	381, 426, 678
BstSLI	GKGCMC	1 cut(s)	473
BstV1I	GCAGC	3 cut(s)	82, 139, 1079
BstV2I	GAAGAC	2 cut(s)	996, 1151
BstXI	CCANNNNNNTGG	2 cut(s)	70, 717
BsuI	GTATCC	1 cut(s)	757
BsuRI	GGCC	5 cut(s)	471, 492, 552, 1034, 1189
BtgI	CCRYGG	2 cut(s)	45, 63
BtrI	CACGTC	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	750
BtsIMutI	CAGTG	2 cut(s)	83, 486
BveI	ACCTGC	1 cut(s)	431
Cac8I	GCNNGC	1 cut(s)	339
CfoI	GCGC	1 cut(s)	813
Cfr13I	GGNCC	6 cut(s)	469, 470, 804, 821, 1033, 1188
Csp6I	GTAC	4 cut(s)	423, 592, 622, 1111
CviAII	CATG	5 cut(s)	46, 64, 122, 801, 874
CviQI	GTAC	4 cut(s)	423, 592, 622, 1111
DdeI	CTNAG	2 cut(s)	267, 760
DpnI	GATC	3 cut(s)	193, 542, 644
DpnII	GATC	3 cut(s)	191, 540, 642
DrdI	GACNNNNNNGTC	1 cut(s)	58
DseDI	GACNNNNNNGTC	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	490
Eam1104I	CTCTTC	2 cut(s)	972, 1127
EarI	CTCTTC	2 cut(s)	972, 1127
Ecl136II	GAGCTC	1 cut(s)	261
Eco130I	CCWWGG	3 cut(s)	45, 63, 889
Eco147I	AGGCCT	1 cut(s)	552
Eco24I	GRGCYC	2 cut(s)	263, 473
Eco31I	GGTCTC	1 cut(s)	721
Eco47I	GGWCC	2 cut(s)	804, 821
Eco53kI	GAGCTC	1 cut(s)	261
EcoICRI	GAGCTC	1 cut(s)	261
EcoO109I	RGGNCCY	5 cut(s)	469, 470, 821, 1033, 1188
EcoRII	CCWGG	2 cut(s)	1008, 1163
EcoT14I	CCWWGG	3 cut(s)	45, 63, 889
EcoT38I	GRGCYC	2 cut(s)	263, 473
ErhI	CCWWGG	3 cut(s)	45, 63, 889
FaeI	CATG	5 cut(s)	49, 67, 125, 804, 877
FalI	AAGNNNNNCTT	2 cut(s)	1177, 1209
FaqI	GGGAC	1 cut(s)	834
FatI	CATG	5 cut(s)	45, 63, 121, 800, 873
Fnu4HI	GCNGC	3 cut(s)	96, 153, 1068
FokI	GGATG	1 cut(s)	737
FriOI	GRGCYC	2 cut(s)	263, 473
Fsp4HI	GCNGC	3 cut(s)	96, 153, 1068
FspBI	CTAG	4 cut(s)	1023, 1178, 1224, 1246
GlaI	GCGC	1 cut(s)	812
GluI	GCNGC	3 cut(s)	96, 153, 1068
GsuI	CTGGAG	2 cut(s)	1017, 1172
HaeIII	GGCC	5 cut(s)	471, 492, 552, 1034, 1189
HhaI	GCGC	1 cut(s)	813
Hin1II	CATG	5 cut(s)	49, 67, 125, 804, 877
Hin6I	GCGC	1 cut(s)	811
HinP1I	GCGC	1 cut(s)	811
HinfI	GANTC	7 cut(s)	59, 288, 457, 992, 1013, 1147, 1168
HphI	GGTGA	6 cut(s)	61, 466, 592, 905, 1008, 1163
Hpy166II	GTNNAC	1 cut(s)	796
Hpy188I	TCNGA	2 cut(s)	270, 558
Hpy188III	TCNNGA	6 cut(s)	762, 996, 1023, 1151, 1178, 1224
Hpy8I	GTNNAC	1 cut(s)	796
HpyAV	CCTTC	5 cut(s)	3, 341, 534, 563, 811
HpyCH4III	ACNGT	7 cut(s)	87, 382, 640, 793, 955, 1110, 1115
HpyCH4IV	ACGT	2 cut(s)	69, 884
HpyCH4V	TGCA	7 cut(s)	98, 284, 440, 446, 1048, 1067, 1200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	2 cut(s)	267, 760
HpySE526I	ACGT	2 cut(s)	69, 884
Hsp92II	CATG	5 cut(s)	49, 67, 125, 804, 877
HspAI	GCGC	1 cut(s)	811
Kzo9I	GATC	3 cut(s)	191, 540, 642
LmnI	GCTCC	6 cut(s)	178, 258, 923, 998, 1078, 1153
Lsp1109I	GCAGC	3 cut(s)	82, 139, 1079
LweI	GCATC	2 cut(s)	678, 1057
MaeI	CTAG	4 cut(s)	1023, 1178, 1224, 1246
MaeII	ACGT	2 cut(s)	69, 884
MaeIII	GTNAC	6 cut(s)	17, 49, 454, 580, 832, 880
MalI	GATC	3 cut(s)	193, 542, 644
MboI	GATC	3 cut(s)	191, 540, 642
MboII	GAAGA	8 cut(s)	230, 233, 637, 640, 989, 1001, 1144, 1156
MhlI	GDGCHC	3 cut(s)	263, 473, 761
MluCI	AATT	9 cut(s)	234, 252, 292, 414, 477, 609, 632, 930, 1085
MlyI	GAGTC	4 cut(s)	68, 451, 986, 1141
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	7 cut(s)	192, 216, 221, 494, 542, 1048, 1051
MseI	TTAA	1 cut(s)	635
MslI	CAYNNNNRTG	1 cut(s)	68
MspR9I	CCNGG	2 cut(s)	1010, 1165
Mva1269I	GAATGC	1 cut(s)	446
MvaI	CCWGG	2 cut(s)	1010, 1165
MwoI	GCNNNNNNNGC	1 cut(s)	158
NcoI	CCATGG	2 cut(s)	45, 63
NdeII	GATC	3 cut(s)	191, 540, 642
NlaIII	CATG	5 cut(s)	49, 67, 125, 804, 877
NlaIV	GGNNCC	5 cut(s)	471, 472, 822, 1035, 1190
NmuCI	GTSAC	4 cut(s)	49, 454, 580, 832
PaqCI	CACCTGC	1 cut(s)	431
PceI	AGGCCT	1 cut(s)	552
PctI	GAATGC	1 cut(s)	446
PfeI	GAWTC	3 cut(s)	288, 1013, 1168
PkrI	GCNGC	3 cut(s)	97, 154, 1069
PleI	GAGTC	4 cut(s)	67, 451, 986, 1141
PpsI	GAGTC	4 cut(s)	67, 451, 986, 1141
PpuMI	RGGWCCY	1 cut(s)	821
Psp124BI	GAGCTC	1 cut(s)	263
Psp1406I	AACGTT	1 cut(s)	884
Psp5II	RGGWCCY	1 cut(s)	821
Psp6I	CCWGG	2 cut(s)	1008, 1163
PspGI	CCWGG	2 cut(s)	1008, 1163
PspN4I	GGNNCC	5 cut(s)	471, 472, 822, 1035, 1190
PspOMI	GGGCCC	1 cut(s)	469
PspPI	GGNCC	6 cut(s)	469, 470, 804, 821, 1033, 1188
PspPPI	RGGWCCY	1 cut(s)	821
RsaI	GTAC	4 cut(s)	424, 593, 623, 1112
RsaNI	GTAC	4 cut(s)	423, 592, 622, 1111
RseI	CAYNNNNRTG	1 cut(s)	68
SacI	GAGCTC	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	635
SatI	GCNGC	3 cut(s)	96, 153, 1068
Sau3AI	GATC	3 cut(s)	191, 540, 642
Sau96I	GGNCC	6 cut(s)	469, 470, 804, 821, 1033, 1188
SchI	GAGTC	4 cut(s)	68, 451, 986, 1141
ScrFI	CCNGG	2 cut(s)	1010, 1165
SduI	GDGCHC	3 cut(s)	263, 473, 761
SfaNI	GCATC	2 cut(s)	678, 1057
SfcI	CTRYAG	3 cut(s)	381, 426, 678
SinI	GGWCC	2 cut(s)	804, 821
SmiMI	CAYNNNNRTG	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
Sse9I	AATT	9 cut(s)	234, 252, 292, 414, 477, 609, 632, 930, 1085
SseBI	AGGCCT	1 cut(s)	552
SspMI	CTAG	4 cut(s)	1023, 1178, 1224, 1246
SstI	GAGCTC	1 cut(s)	263
StuI	AGGCCT	1 cut(s)	552
StyD4I	CCNGG	2 cut(s)	1008, 1163
StyI	CCWWGG	3 cut(s)	45, 63, 889
TaaI	ACNGT	7 cut(s)	87, 382, 640, 793, 955, 1110, 1115
TaiI	ACGT	2 cut(s)	72, 887
TaqI	TCGA	1 cut(s)	854
TasI	AATT	9 cut(s)	234, 252, 292, 414, 477, 609, 632, 930, 1085
TfiI	GAWTC	3 cut(s)	288, 1013, 1168
Tru1I	TTAA	1 cut(s)	635
Tru9I	TTAA	1 cut(s)	635
TscAI	CASTG	2 cut(s)	90, 493
TseFI	GTSAC	4 cut(s)	49, 454, 580, 832
TseI	GCWGC	3 cut(s)	95, 152, 1067
Tsp45I	GTSAC	4 cut(s)	49, 454, 580, 832
TspDTI	ATGAA	5 cut(s)	169, 340, 629, 645, 893
TspGWI	ACGGA	1 cut(s)	1228
TspRI	CASTG	2 cut(s)	90, 493
VpaK11BI	GGWCC	2 cut(s)	804, 821
XapI	RAATTY	2 cut(s)	234, 477
XbaI	TCTAGA	3 cut(s)	1022, 1177, 1223
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XspI	CTAG	4 cut(s)	1023, 1178, 1224, 1246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.