Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002325

Physical Location & Seq

Genomic Coordinates Forward (+)

18504164 .. 18505390

Gene Structure 1227 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G49910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAAGTACAACCCAAGAGTGACCTCTTCTCGCAGAAAGAACAGGAAGGCTCATTTCACAGCTTCCTCCAGCGAGAGGCGTGTGATAATGAGCTCTCCTCTCTCCACCGATCTTCGTCAGAAGTACAATGTCAGATCCATGCCGATCCGTAAAGACGACGAGGTTCAGATCGTTCGTGGTACTTACAAGGGACGTGAAGGCAAAGTTGTTCAGGTTTACCGTCGCAAATGGGTGATTCACATCGAGAGAATCACGAGGGAGAAGGTGAATGGAACAACCGTGAACGTTGGGATTCAGCCGTCGAAAGTTGTGATAACGAAGCTTCGTCTTGATAAAGATAGGAAATCGCTTTTGGAGAGGAAGGCTAAGGGACGTGCTGCTGCTGATAAGGAGAAGGGTACTAAGTTTACGTCTGAGGATGTTATGCAGAACGTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L26

Protein Analysis

146

Amino Acids

16.94

Weight (kDa)

10.79

Isoelectric Point (pI)

38.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L26	PF16906	8 - 121	4.1e-38	Ribosomal proteins L26 eukaryotic, L24P archaeal
KOW	PF00467	51 - 82	1.7e-08	KOW motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49910 AT5G67510
fragaria_vesca	FvH4_1g17640 FvH4_5g24274 FvH4_6g36980
malus_domestica	MD02G1185200.v1.1 MD06G1158400.v1.1 MD12G1060600.v1.1 MD12G1243600.v1.1 MD14G1120400.v1.1 MD16G1170200.v1.1
prunus_persica	Prupe.3G002900_v2.0.a1 Prupe.6G221600_v2.0.a1
pyrus_communis	pycom02g15010 pycom06g14140 pycom14g13750
rosa_chinensis	RchiOBHm_Chr2g0107961 RchiOBHm_Chr2g0110121 RchiOBHm_Chr2g0149501
rosa_laevigata	RLG00000017629 RLG00000020414
rosa_multiflora	Rmu_sc0001484.1_g000030 Rmu_sc0005278.1_g000014 Rmu_sc0006867.1_g000007 Rmu_sc0008619.1_g000004
rosa_roxburghii	Rroxscaffold_2G00094390 Rroxscaffold_2G00098050 Rroxscaffold_2G00135780
rosa_rugosa	Rorug02G0149000 Rorug02G0412000 Rorug04G0124600
rosa_samantha	Rh2AG198300 Rh2AG472100 Rh2BG211100 Rh2BG484200 Rh2CG202900 Rh2CG219800 Rh2CG458000 Rh2DG205900 Rh2DG493400
rosa_wichuraiana	Rw2G015730 Rw2G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	2 cut(s)	285, 432
AclWI	GGATC	2 cut(s)	129, 139
AfaI	GTAC	4 cut(s)	8, 125, 181, 400
AfiI	CCNNNNNNNGG	1 cut(s)	75
AjiI	CACGTC	2 cut(s)	194, 374
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AluBI	AGCT	3 cut(s)	62, 93, 322
AluI	AGCT	3 cut(s)	62, 93, 322
Alw21I	GWGCWC	1 cut(s)	95
AlwI	GGATC	2 cut(s)	129, 139
ApeKI	GCWGC	2 cut(s)	377, 380
AsuHPI	GGTGA	2 cut(s)	244, 277
BanII	GRGCYC	1 cut(s)	95
BauI	CACGAG	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	95
BbvI	GCAGC	2 cut(s)	364, 367
BceAI	ACGGC	1 cut(s)	283
BisI	GCNGC	2 cut(s)	378, 381
BlsI	GCNGC	2 cut(s)	379, 382
BmgBI	CACGTC	2 cut(s)	194, 374
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
BpmI	CTGGAG	1 cut(s)	52
Bpu10I	CCTNAGC	1 cut(s)	366
BsaBI	GATNNNNATC	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse8I	GATNNNNATC	1 cut(s)	239
BseGI	GGATG	1 cut(s)	424
BseJI	GATNNNNATC	1 cut(s)	239
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	405
BseRI	GAGGAG	1 cut(s)	87
BseXI	GCAGC	2 cut(s)	364, 367
BsiHKAI	GWGCWC	1 cut(s)	95
BslFI	GGGAC	2 cut(s)	204, 384
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmFI	GGGAC	2 cut(s)	204, 384
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp143I	GATC	4 cut(s)	109, 134, 144, 168
BspCNI	CTCAG	1 cut(s)	406
BspPI	GGATC	2 cut(s)	129, 139
BssMI	GATC	4 cut(s)	109, 134, 144, 168
BssSI	CACGAG	1 cut(s)	253
Bst2BI	CACGAG	1 cut(s)	253
Bst4CI	ACNGT	2 cut(s)	221, 280
Bst6I	CTCTTC	1 cut(s)	31
BstDEI	CTNAG	3 cut(s)	366, 402, 414
BstF5I	GGATG	1 cut(s)	424
BstKTI	GATC	4 cut(s)	112, 137, 147, 171
BstMBI	GATC	4 cut(s)	109, 134, 144, 168
BstV1I	GCAGC	2 cut(s)	364, 367
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BtrI	CACGTC	2 cut(s)	194, 374
BtsCI	GGATG	1 cut(s)	424
Csp6I	GTAC	4 cut(s)	7, 124, 180, 399
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	6 cut(s)	50, 62, 93, 298, 322, 365
CviKI_1	RGCY	6 cut(s)	50, 62, 93, 298, 322, 365
CviQI	GTAC	4 cut(s)	7, 124, 180, 399
DdeI	CTNAG	3 cut(s)	366, 402, 414
DpnI	GATC	4 cut(s)	111, 136, 146, 170
DpnII	GATC	4 cut(s)	109, 134, 144, 168
Eam1104I	CTCTTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	31
Ecl136II	GAGCTC	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	95
Eco53kI	GAGCTC	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	95
FaeI	CATG	1 cut(s)	142
FaiI	YATR	2 cut(s)	140, 425
FaqI	GGGAC	2 cut(s)	204, 384
FatI	CATG	1 cut(s)	138
Fnu4HI	GCNGC	2 cut(s)	378, 381
FokI	GGATG	1 cut(s)	431
FriOI	GRGCYC	1 cut(s)	95
Fsp4HI	GCNGC	2 cut(s)	378, 381
GluI	GCNGC	2 cut(s)	378, 381
GsuI	CTGGAG	1 cut(s)	52
Hin1II	CATG	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	3 cut(s)	235, 249, 292
HphI	GGTGA	2 cut(s)	244, 277
Hpy166II	GTNNAC	3 cut(s)	217, 283, 408
Hpy188I	TCNGA	4 cut(s)	120, 134, 168, 415
Hpy188III	TCNNGA	3 cut(s)	244, 253, 329
Hpy8I	GTNNAC	3 cut(s)	217, 283, 408
Hpy99I	CGWCG	3 cut(s)	161, 225, 304
HpyAV	CCTTC	5 cut(s)	40, 191, 256, 355, 388
HpyCH4III	ACNGT	2 cut(s)	221, 280
HpyCH4IV	ACGT	5 cut(s)	193, 285, 373, 410, 432
HpyCH4V	TGCA	1 cut(s)	427
HpyF3I	CTNAG	3 cut(s)	366, 402, 414
HpySE526I	ACGT	5 cut(s)	193, 285, 373, 410, 432
Hsp92II	CATG	1 cut(s)	142
Kzo9I	GATC	4 cut(s)	109, 134, 144, 168
LpnPI	CCDG	3 cut(s)	28, 82, 197
Lsp1109I	GCAGC	2 cut(s)	364, 367
MaeII	ACGT	5 cut(s)	193, 285, 373, 410, 432
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	4 cut(s)	111, 136, 146, 170
MboI	GATC	4 cut(s)	109, 134, 144, 168
MboII	GAAGA	2 cut(s)	18, 104
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	95
MnlI	CCTC	8 cut(s)	34, 69, 76, 108, 154, 249, 351, 409
MseI	TTAA	1 cut(s)	439
NdeII	GATC	4 cut(s)	109, 134, 144, 168
NlaIII	CATG	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	19
PfeI	GAWTC	3 cut(s)	235, 249, 292
PkrI	GCNGC	2 cut(s)	379, 382
Psp124BI	GAGCTC	1 cut(s)	95
Psp1406I	AACGTT	2 cut(s)	285, 432
PsuI	RGATCY	1 cut(s)	134
RsaI	GTAC	4 cut(s)	8, 125, 181, 400
RsaNI	GTAC	4 cut(s)	7, 124, 180, 399
SacI	GAGCTC	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	439
SatI	GCNGC	2 cut(s)	378, 381
Sau3AI	GATC	4 cut(s)	109, 134, 144, 168
SduI	GDGCHC	1 cut(s)	95
SstI	GAGCTC	1 cut(s)	95
TaaI	ACNGT	2 cut(s)	221, 280
TaiI	ACGT	5 cut(s)	196, 288, 376, 413, 435
TaqI	TCGA	2 cut(s)	243, 302
TatI	WGTACW	2 cut(s)	6, 123
TfiI	GAWTC	3 cut(s)	235, 249, 292
Tru1I	TTAA	1 cut(s)	439
Tru9I	TTAA	1 cut(s)	439
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	2 cut(s)	377, 380
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.