Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005278.1

Orthogroup ID

OG0002325

Physical Location & Seq

Genomic Coordinates Reverse (-)

94442 .. 94914

Gene Structure 473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005278.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgtcaattctgggcttggatcctgggcatcctaacaaggaacccacgcgtctcgagctacagccacaagagccgcaaggcccacttcactgcatcgttgagcgtccgccgagtcttgatgagcgcaccactctcctccgacctctggtcatccacatcgagcgtatcacccgcgagaaggtcaatggctccacggtcaacatcggaatcaacccctccaaggttctaatcaccaagctcaagctcgacaaggacagtaagtcgctgctggaccgcaaggccaagggcagaactgtcgccgataaggacaaaggcaccaagttgacggcgggggacatcatgcagaacatggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L26

Protein Analysis

118

Amino Acids

13.12

Weight (kDa)

9.37

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49910 AT5G67510
fragaria_vesca	FvH4_1g17640 FvH4_5g24274 FvH4_6g36980
malus_domestica	MD02G1185200.v1.1 MD06G1158400.v1.1 MD12G1060600.v1.1 MD12G1243600.v1.1 MD14G1120400.v1.1 MD16G1170200.v1.1
prunus_persica	Prupe.3G002900_v2.0.a1 Prupe.6G221600_v2.0.a1
pyrus_communis	pycom02g15010 pycom06g14140 pycom14g13750
rosa_chinensis	RchiOBHm_Chr2g0107961 RchiOBHm_Chr2g0110121 RchiOBHm_Chr2g0149501
rosa_laevigata	RLG00000017629 RLG00000020414
rosa_multiflora	Rmu_sc0001484.1_g000030 Rmu_sc0005278.1_g000014 Rmu_sc0006867.1_g000007 Rmu_sc0008619.1_g000004
rosa_roxburghii	Rroxscaffold_2G00094390 Rroxscaffold_2G00098050 Rroxscaffold_2G00135780
rosa_rugosa	Rorug02G0149000 Rorug02G0412000 Rorug04G0124600
rosa_samantha	Rh2AG198300 Rh2AG472100 Rh2BG211100 Rh2BG484200 Rh2CG202900 Rh2CG219800 Rh2CG458000 Rh2DG205900 Rh2DG493400
rosa_wichuraiana	Rw2G015730 Rw2G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	314
AccII	CGCG	2 cut(s)	49, 174
AciI	CCGC	5 cut(s)	74, 107, 172, 274, 329
AclWI	GGATC	2 cut(s)	14, 27
AfiI	CCNNNNNNNGG	3 cut(s)	145, 178, 220
AflIII	ACRYGT	1 cut(s)	47
AhdI	GACNNNNNGTC	2 cut(s)	146, 259
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	3 cut(s)	58, 238, 244
AluI	AGCT	3 cut(s)	58, 238, 244
Alw26I	GTCTC	1 cut(s)	56
AlwI	GGATC	2 cut(s)	14, 27
Ama87I	CYCGRG	1 cut(s)	53
AoxI	GGCC	2 cut(s)	79, 279
ApeKI	GCWGC	1 cut(s)	265
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	2 cut(s)	80, 271
AsuHPI	GGTGA	2 cut(s)	160, 223
AvaI	CYCGRG	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	271
BamHI	GGATCC	1 cut(s)	19
BanI	GGYRCC	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	252
BceAI	ACGGC	1 cut(s)	342
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BciT130I	CCWGG	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	59
BisI	GCNGC	2 cut(s)	74, 266
BlsI	GCNGC	2 cut(s)	75, 267
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	271
BmeRI	GACNNNNNGTC	2 cut(s)	146, 259
BmeT110I	CYCGRG	1 cut(s)	53
BmgT120I	GGNCC	2 cut(s)	80, 271
BmiI	GGNNCC	4 cut(s)	21, 42, 190, 316
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	2 cut(s)	37, 102
BpuEI	CTTGAG	1 cut(s)	224
BsaJI	CCNNGG	4 cut(s)	23, 192, 219, 282
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 178, 220
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	4 cut(s)	23, 192, 219, 282
BseGI	GGATG	2 cut(s)	28, 150
BseLI	CCNNNNNNNGG	3 cut(s)	145, 178, 220
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	252
Bsh1236I	CGCG	2 cut(s)	49, 174
BshFI	GGCC	2 cut(s)	81, 281
BshNI	GGYRCC	1 cut(s)	314
BsiHKCI	CYCGRG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	3 cut(s)	145, 178, 220
BsmAI	GTCTC	1 cut(s)	56
BsmBI	CGTCTC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	2 cut(s)	81, 281
BsoBI	CYCGRG	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	5 cut(s)	74, 107, 172, 274, 329
BspANI	GGCC	2 cut(s)	81, 281
BspFNI	CGCG	2 cut(s)	49, 174
BspLI	GGNNCC	4 cut(s)	21, 42, 190, 316
BspPI	GGATC	2 cut(s)	14, 27
BspT107I	GGYRCC	1 cut(s)	314
BssECI	CCNNGG	4 cut(s)	23, 192, 219, 282
BssMI	GATC	1 cut(s)	19
BssT1I	CCWWGG	2 cut(s)	219, 282
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	3 cut(s)	196, 257, 295
BstDSI	CCRYGG	1 cut(s)	192
BstF5I	GGATG	2 cut(s)	28, 150
BstFNI	CGCG	2 cut(s)	49, 174
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 70
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	1 cut(s)	59
BstUI	CGCG	2 cut(s)	49, 174
BstV1I	GCAGC	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BsuRI	GGCC	2 cut(s)	81, 281
BtgI	CCRYGG	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	28, 150
BtsI	GCAGTG	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	88
CfoI	GCGC	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	80, 271
CseI	GACGC	2 cut(s)	38, 92
CviAII	CATG	2 cut(s)	340, 349
CviJI	RGCY	9 cut(s)	15, 58, 64, 73, 81, 189, 238, 244, 281
CviKI_1	RGCY	9 cut(s)	15, 58, 64, 73, 81, 189, 238, 244, 281
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
DriI	GACNNNNNGTC	2 cut(s)	146, 259
Eam1105I	GACNNNNNGTC	2 cut(s)	146, 259
EciI	GGCGGA	1 cut(s)	96
Eco130I	CCWWGG	2 cut(s)	219, 282
Eco47I	GGWCC	1 cut(s)	271
Eco88I	CYCGRG	1 cut(s)	53
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	2 cut(s)	219, 282
ErhI	CCWWGG	2 cut(s)	219, 282
Esp3I	CGTCTC	1 cut(s)	56
FaeI	CATG	2 cut(s)	343, 352
FaiI	YATR	2 cut(s)	341, 350
FalI	AAGNNNNNCTT	2 cut(s)	69, 101
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	2 cut(s)	339, 348
FauI	CCCGC	2 cut(s)	179, 322
Fnu4HI	GCNGC	2 cut(s)	74, 266
FokI	GGATG	2 cut(s)	15, 137
Fsp4HI	GCNGC	2 cut(s)	74, 266
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	2 cut(s)	74, 266
HaeIII	GGCC	2 cut(s)	81, 281
HgaI	GACGC	2 cut(s)	38, 92
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	2 cut(s)	343, 352
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HincII	GTYRAC	2 cut(s)	199, 324
HindII	GTYRAC	2 cut(s)	199, 324
HinfI	GANTC	2 cut(s)	112, 207
HphI	GGTGA	2 cut(s)	160, 223
Hpy166II	GTNNAC	2 cut(s)	199, 324
Hpy188I	TCNGA	2 cut(s)	140, 206
Hpy188III	TCNNGA	2 cut(s)	53, 116
Hpy8I	GTNNAC	2 cut(s)	199, 324
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	3 cut(s)	196, 257, 295
HpyCH4V	TGCA	2 cut(s)	93, 343
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 70
Hsp92II	CATG	2 cut(s)	343, 352
HspAI	GCGC	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	1 cut(s)	194
LpnPI	CCDG	4 cut(s)	9, 36, 131, 254
Lsp1109I	GCAGC	1 cut(s)	252
LweI	GCATC	2 cut(s)	37, 102
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MflI	RGATCY	1 cut(s)	19
MluCI	AATT	1 cut(s)	6
MluI	ACGCGT	1 cut(s)	47
MlyI	GAGTC	1 cut(s)	121
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	3 cut(s)	146, 153, 226
MspR9I	CCNGG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	24
MvnI	CGCG	2 cut(s)	49, 174
MwoI	GCNNNNNNNGC	2 cut(s)	55, 70
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	2 cut(s)	343, 352
NlaIV	GGNNCC	4 cut(s)	21, 42, 190, 316
NmeAIII	GCCGAG	1 cut(s)	135
PaeR7I	CTCGAG	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	207
PkrI	GCNGC	2 cut(s)	75, 267
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	4 cut(s)	21, 42, 190, 316
PspPI	GGNCC	2 cut(s)	80, 271
PsuI	RGATCY	1 cut(s)	19
SatI	GCNGC	2 cut(s)	74, 266
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	2 cut(s)	80, 271
SchI	GAGTC	1 cut(s)	121
ScrFI	CCNGG	1 cut(s)	24
SetI	ASST	6 cut(s)	60, 145, 183, 225, 240, 246
SfaNI	GCATC	2 cut(s)	37, 102
SfcI	CTRYAG	1 cut(s)	59
Sfr274I	CTCGAG	1 cut(s)	53
SinI	GGWCC	1 cut(s)	271
SlaI	CTCGAG	1 cut(s)	53
SmlI	CTYRAG	2 cut(s)	53, 239
SmoI	CTYRAG	2 cut(s)	53, 239
Sse9I	AATT	1 cut(s)	6
SsiI	CCGC	5 cut(s)	74, 107, 172, 274, 329
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	2 cut(s)	219, 282
TaaI	ACNGT	3 cut(s)	196, 257, 295
TaqI	TCGA	3 cut(s)	54, 159, 246
TasI	AATT	1 cut(s)	6
TauI	GCSGC	1 cut(s)	76
TfiI	GAWTC	1 cut(s)	207
TscAI	CASTG	1 cut(s)	95
TseI	GCWGC	1 cut(s)	265
TspRI	CASTG	1 cut(s)	95
VpaK11BI	GGWCC	1 cut(s)	271
XhoI	CTCGAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.