Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002325

Physical Location & Seq

Genomic Coordinates Forward (+)

199017 .. 199763

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G002900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAAGTACAATCCAAGAGTGACCAGCTCTCGCCGCAAGAACCGAAAGGCTCATTTCACGGCGCCGTCGAGCGTCCGCCGTGTGTTGATGAGCTCTCCTATCTCGTCAGACCTCCGGTCCAAGTACAATGTCCGGTCCATGCCGGTTCGCAAGGATGACGAGGTTCAGGTGGTGCGTGGGACCTACAAGGGTCGCGAGGGCAAGGTAGTCCAGGTTTACAGGCGCAAATGGGTCATCCACATAGAGCGCATCACCAGGGAGAAGGTCAATGGGTCGACGGTGAACGTGGGCATCAACCCATCCAAGGTGGTGATCACCAAGCTCAGGCTGGACAAGGATAGGAAGGCGCTGCTGGACCGCAAGGCCAAGGGTCGTGCCGCTGCAGACAAGGATAAGGGTACTAAGTTCACAGCCGAAGATATTATGCAGAACGTCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L26

Protein Analysis

147

Amino Acids

16.77

Weight (kDa)

10.91

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49910 AT5G67510
fragaria_vesca	FvH4_1g17640 FvH4_5g24274 FvH4_6g36980
malus_domestica	MD02G1185200.v1.1 MD06G1158400.v1.1 MD12G1060600.v1.1 MD12G1243600.v1.1 MD14G1120400.v1.1 MD16G1170200.v1.1
prunus_persica	Prupe.3G002900_v2.0.a1 Prupe.6G221600_v2.0.a1
pyrus_communis	pycom02g15010 pycom06g14140 pycom14g13750
rosa_chinensis	RchiOBHm_Chr2g0107961 RchiOBHm_Chr2g0110121 RchiOBHm_Chr2g0149501
rosa_laevigata	RLG00000017629 RLG00000020414
rosa_multiflora	Rmu_sc0001484.1_g000030 Rmu_sc0005278.1_g000014 Rmu_sc0006867.1_g000007 Rmu_sc0008619.1_g000004
rosa_roxburghii	Rroxscaffold_2G00094390 Rroxscaffold_2G00098050 Rroxscaffold_2G00135780
rosa_rugosa	Rorug02G0149000 Rorug02G0412000 Rorug04G0124600
rosa_samantha	Rh2AG198300 Rh2AG472100 Rh2BG211100 Rh2BG484200 Rh2CG202900 Rh2CG219800 Rh2CG458000 Rh2DG205900 Rh2DG493400
rosa_wichuraiana	Rw2G015730 Rw2G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	61
AccI	GTMKAC	2 cut(s)	275, 435
AccII	CGCG	1 cut(s)	195
AciI	CCGC	4 cut(s)	34, 76, 358, 378
AcyI	GRCGYC	1 cut(s)	62
AfaI	GTAC	3 cut(s)	8, 125, 400
AfiI	CCNNNNNNNGG	2 cut(s)	304, 324
AhdI	GACNNNNNGTC	1 cut(s)	115
AjnI	CCWGG	2 cut(s)	210, 254
AluBI	AGCT	3 cut(s)	27, 93, 322
AluI	AGCT	3 cut(s)	27, 93, 322
Alw21I	GWGCWC	1 cut(s)	95
AoxI	GGCC	1 cut(s)	363
ApeKI	GCWGC	2 cut(s)	349, 380
AspLEI	GCGC	4 cut(s)	64, 225, 249, 349
AspS9I	GGNCC	4 cut(s)	117, 135, 180, 355
AsuHPI	GGTGA	4 cut(s)	244, 292, 307, 322
AvaII	GGWCC	4 cut(s)	117, 135, 180, 355
BanI	GGYRCC	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	95
Bbv12I	GWGCWC	1 cut(s)	95
BbvI	GCAGC	2 cut(s)	336, 367
BccI	CCATC	1 cut(s)	307
BceAI	ACGGC	3 cut(s)	49, 63, 75
BciT130I	CCWGG	2 cut(s)	212, 256
BclI	TGATCA	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	381
BfoI	RGCGCY	2 cut(s)	65, 350
BisI	GCNGC	4 cut(s)	34, 350, 378, 381
BlsI	GCNGC	4 cut(s)	35, 351, 379, 382
Bme1390I	CCNGG	2 cut(s)	212, 256
Bme18I	GGWCC	4 cut(s)	117, 135, 180, 355
BmeRI	GACNNNNNGTC	1 cut(s)	115
BmgT120I	GGNCC	4 cut(s)	117, 135, 180, 355
BmiI	GGNNCC	2 cut(s)	63, 181
BmrFI	CCNGG	2 cut(s)	212, 256
BmsI	GCATC	2 cut(s)	258, 300
Bpu10I	CCTNAGC	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	62
BsaJI	CCNNGG	3 cut(s)	255, 303, 366
BsaWI	WCCGGW	2 cut(s)	114, 132
Bsc4I	CCNNNNNNNGG	2 cut(s)	304, 324
Bse118I	RCCGGY	1 cut(s)	142
BseBI	CCWGG	2 cut(s)	212, 256
BseDI	CCNNGG	3 cut(s)	255, 303, 366
BseGI	GGATG	3 cut(s)	160, 234, 299
BseLI	CCNNNNNNNGG	2 cut(s)	304, 324
BseMII	CTCAG	1 cut(s)	337
BseXI	GCAGC	2 cut(s)	336, 367
Bsh1236I	CGCG	1 cut(s)	195
BshFI	GGCC	1 cut(s)	365
BshNI	GGYRCC	1 cut(s)	61
BsiHKAI	GWGCWC	1 cut(s)	95
BsiSI	CCGG	3 cut(s)	115, 133, 143
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	2 cut(s)	304, 324
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	312
Bsp68I	TCGCGA	1 cut(s)	195
BspACI	CCGC	4 cut(s)	34, 76, 358, 378
BspANI	GGCC	1 cut(s)	365
BspCNI	CTCAG	1 cut(s)	336
BspFNI	CGCG	1 cut(s)	195
BspLI	GGNNCC	2 cut(s)	63, 181
BspMAI	CTGCAG	1 cut(s)	385
BspT107I	GGYRCC	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	142
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	3 cut(s)	255, 303, 366
BssMI	GATC	1 cut(s)	312
BssNI	GRCGYC	1 cut(s)	62
BssT1I	CCWWGG	2 cut(s)	303, 366
Bst2UI	CCWGG	2 cut(s)	212, 256
Bst4CI	ACNGT	1 cut(s)	280
BstACI	GRCGYC	1 cut(s)	62
BstDEI	CTNAG	2 cut(s)	323, 402
BstF5I	GGATG	3 cut(s)	160, 234, 299
BstFNI	CGCG	1 cut(s)	195
BstH2I	RGCGCY	2 cut(s)	65, 350
BstHHI	GCGC	4 cut(s)	64, 225, 249, 349
BstKTI	GATC	1 cut(s)	315
BstMBI	GATC	1 cut(s)	312
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstNI	CCWGG	2 cut(s)	212, 256
BstSCI	CCNGG	2 cut(s)	210, 254
BstSFI	CTRYAG	1 cut(s)	381
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	2 cut(s)	336, 367
BsuRI	GGCC	1 cut(s)	365
BtsCI	GGATG	3 cut(s)	160, 234, 299
BtuMI	TCGCGA	1 cut(s)	195
CfoI	GCGC	4 cut(s)	64, 225, 249, 349
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	4 cut(s)	117, 135, 180, 355
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	3 cut(s)	7, 124, 399
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	7 cut(s)	27, 50, 93, 322, 328, 365, 413
CviKI_1	RGCY	7 cut(s)	27, 50, 93, 322, 328, 365, 413
CviQI	GTAC	3 cut(s)	7, 124, 399
DdeI	CTNAG	2 cut(s)	323, 402
DinI	GGCGCC	1 cut(s)	63
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
DriI	GACNNNNNGTC	1 cut(s)	115
Eam1105I	GACNNNNNGTC	1 cut(s)	115
EciI	GGCGGA	1 cut(s)	65
Ecl136II	GAGCTC	1 cut(s)	93
Eco130I	CCWWGG	2 cut(s)	303, 366
Eco24I	GRGCYC	1 cut(s)	95
Eco47I	GGWCC	4 cut(s)	117, 135, 180, 355
Eco53kI	GAGCTC	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	93
EcoO109I	RGGNCCY	1 cut(s)	180
EcoRII	CCWGG	2 cut(s)	210, 254
EcoT14I	CCWWGG	2 cut(s)	303, 366
EcoT38I	GRGCYC	1 cut(s)	95
EgeI	GGCGCC	1 cut(s)	63
EheI	GGCGCC	1 cut(s)	63
ErhI	CCWWGG	2 cut(s)	303, 366
FaeI	CATG	1 cut(s)	142
FaiI	YATR	3 cut(s)	140, 242, 425
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	1 cut(s)	138
FbaI	TGATCA	1 cut(s)	312
FblI	GTMKAC	2 cut(s)	275, 435
Fnu4HI	GCNGC	4 cut(s)	34, 350, 378, 381
FokI	GGATG	3 cut(s)	167, 221, 286
FriOI	GRGCYC	1 cut(s)	95
Fsp4HI	GCNGC	4 cut(s)	34, 350, 378, 381
GlaI	GCGC	4 cut(s)	63, 224, 248, 348
GluI	GCNGC	4 cut(s)	34, 350, 378, 381
HaeII	RGCGCY	2 cut(s)	65, 350
HaeIII	GGCC	1 cut(s)	365
HapII	CCGG	3 cut(s)	115, 133, 143
HgaI	GACGC	1 cut(s)	61
HhaI	GCGC	4 cut(s)	64, 225, 249, 349
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	1 cut(s)	142
Hin6I	GCGC	4 cut(s)	62, 223, 247, 347
HinP1I	GCGC	4 cut(s)	62, 223, 247, 347
HincII	GTYRAC	2 cut(s)	276, 436
HindII	GTYRAC	2 cut(s)	276, 436
HpaII	CCGG	3 cut(s)	115, 133, 143
HphI	GGTGA	4 cut(s)	244, 292, 307, 322
Hpy166II	GTNNAC	5 cut(s)	217, 276, 283, 408, 436
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	5 cut(s)	217, 276, 283, 408, 436
Hpy99I	CGWCG	3 cut(s)	70, 280, 437
HpyAV	CCTTC	2 cut(s)	256, 337
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	2 cut(s)	285, 432
HpyCH4V	TGCA	2 cut(s)	383, 427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	2 cut(s)	323, 402
HpySE526I	ACGT	2 cut(s)	285, 432
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	1 cut(s)	142
HspAI	GCGC	4 cut(s)	62, 223, 247, 347
KasI	GGCGCC	1 cut(s)	61
Ksp22I	TGATCA	1 cut(s)	312
Kzo9I	GATC	1 cut(s)	312
Lsp1109I	GCAGC	2 cut(s)	336, 367
LweI	GCATC	2 cut(s)	258, 300
MaeII	ACGT	2 cut(s)	285, 432
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	1 cut(s)	314
MboI	GATC	1 cut(s)	312
MboII	GAAGA	1 cut(s)	428
MhlI	GDGCHC	1 cut(s)	95
Mly113I	GGCGCC	1 cut(s)	62
MnlI	CCTC	3 cut(s)	122, 154, 190
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	3 cut(s)	115, 133, 143
MspR9I	CCNGG	2 cut(s)	212, 256
MvaI	CCWGG	2 cut(s)	212, 256
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	1 cut(s)	33
NarI	GGCGCC	1 cut(s)	62
NdeII	GATC	1 cut(s)	312
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	2 cut(s)	63, 181
NmuCI	GTSAC	1 cut(s)	19
NruI	TCGCGA	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	1 cut(s)	65
PkrI	GCNGC	4 cut(s)	35, 351, 379, 382
PluTI	GGCGCC	1 cut(s)	65
PpuMI	RGGWCCY	1 cut(s)	180
Psp124BI	GAGCTC	1 cut(s)	95
Psp5II	RGGWCCY	1 cut(s)	180
Psp6I	CCWGG	2 cut(s)	210, 254
PspGI	CCWGG	2 cut(s)	210, 254
PspN4I	GGNNCC	2 cut(s)	63, 181
PspPI	GGNCC	4 cut(s)	117, 135, 180, 355
PspPPI	RGGWCCY	1 cut(s)	180
PstI	CTGCAG	1 cut(s)	385
RruI	TCGCGA	1 cut(s)	195
RsaI	GTAC	3 cut(s)	8, 125, 400
RsaNI	GTAC	3 cut(s)	7, 124, 399
SacI	GAGCTC	1 cut(s)	95
SalI	GTCGAC	2 cut(s)	274, 434
SatI	GCNGC	4 cut(s)	34, 350, 378, 381
Sau3AI	GATC	1 cut(s)	312
Sau96I	GGNCC	4 cut(s)	117, 135, 180, 355
ScrFI	CCNGG	2 cut(s)	212, 256
SduI	GDGCHC	1 cut(s)	95
SfaNI	GCATC	2 cut(s)	258, 300
SfcI	CTRYAG	1 cut(s)	381
SfoI	GGCGCC	1 cut(s)	63
SinI	GGWCC	4 cut(s)	117, 135, 180, 355
SsiI	CCGC	4 cut(s)	34, 76, 358, 378
SspDI	GGCGCC	1 cut(s)	61
SstI	GAGCTC	1 cut(s)	95
StyD4I	CCNGG	2 cut(s)	210, 254
StyI	CCWWGG	2 cut(s)	303, 366
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	2 cut(s)	288, 435
TaqI	TCGA	3 cut(s)	68, 275, 435
TatI	WGTACW	2 cut(s)	6, 123
TauI	GCSGC	2 cut(s)	36, 380
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	2 cut(s)	349, 380
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	4 cut(s)	117, 135, 180, 355
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XmiI	GTMKAC	2 cut(s)	275, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.