Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002325

Physical Location & Seq

Genomic Coordinates Reverse (-)

15679700 .. 15680141

Gene Structure 442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00094390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAAGAGGAACCCCCGCGTCTCGAGCTCCCGCCGCAAGAGCCGCAAGGCTCACTTCACAGCGCCGTCGTCGGTCCGCCGCGTCCTGATGAGCGCGCCTCTCTCCTCCGACCTCCGGTCCAAGTACACCGTCCGGTCCATGCCGGTGCGCAAAGACGACGAGGTCCAGGTGGTGCGCGGGACCTACAAGGGCCGCGAGGGCAAGGTGGTCCAGGTGTACCGCCGCAAGTGGGTGATCCACATCGAGCGCATCACCAGGGAGAAGGTGGTCATCACCAAGCTCAGGCTCGACAAGGACCGCAAGTCTCTGCTCGACCGCAAGGCCAAGGGCCGCGCCGCCGCTGACAAGGACAAGGGCACCAAGTTCACCGCCGAGGATATCATGCAGAATGTCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L26

Protein Analysis

132

Amino Acids

15.34

Weight (kDa)

11.13

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L26	PF16906	8 - 107	1.9e-23	Ribosomal proteins L26 eukaryotic, L24P archaeal
KOW	PF00467	51 - 82	3.2e-08	KOW motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49910 AT5G67510
fragaria_vesca	FvH4_1g17640 FvH4_5g24274 FvH4_6g36980
malus_domestica	MD02G1185200.v1.1 MD06G1158400.v1.1 MD12G1060600.v1.1 MD12G1243600.v1.1 MD14G1120400.v1.1 MD16G1170200.v1.1
prunus_persica	Prupe.3G002900_v2.0.a1 Prupe.6G221600_v2.0.a1
pyrus_communis	pycom02g15010 pycom06g14140 pycom14g13750
rosa_chinensis	RchiOBHm_Chr2g0107961 RchiOBHm_Chr2g0110121 RchiOBHm_Chr2g0149501
rosa_laevigata	RLG00000017629 RLG00000020414
rosa_multiflora	Rmu_sc0001484.1_g000030 Rmu_sc0005278.1_g000014 Rmu_sc0006867.1_g000007 Rmu_sc0008619.1_g000004
rosa_roxburghii	Rroxscaffold_2G00094390 Rroxscaffold_2G00098050 Rroxscaffold_2G00135780
rosa_rugosa	Rorug02G0149000 Rorug02G0412000 Rorug04G0124600
rosa_samantha	Rh2AG198300 Rh2AG472100 Rh2BG211100 Rh2BG484200 Rh2CG202900 Rh2CG219800 Rh2CG458000 Rh2DG205900 Rh2DG493400
rosa_wichuraiana	Rw2G015730 Rw2G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
Acc16I	TGCGCA	1 cut(s)	149
AccB1I	GGYRCC	1 cut(s)	356
AccI	GTMKAC	1 cut(s)	393
AccII	CGCG	6 cut(s)	18, 81, 95, 177, 195, 333
AclWI	GGATC	1 cut(s)	229
AfaI	GTAC	2 cut(s)	125, 218
AfiI	CCNNNNNNNGG	3 cut(s)	114, 229, 282
AhdI	GACNNNNNGTC	2 cut(s)	115, 301
AjnI	CCWGG	3 cut(s)	165, 210, 254
AluBI	AGCT	2 cut(s)	27, 280
AluI	AGCT	2 cut(s)	27, 280
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	2 cut(s)	25, 309
AlwI	GGATC	1 cut(s)	229
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	3 cut(s)	190, 321, 328
AspLEI	GCGC	7 cut(s)	64, 95, 97, 150, 177, 249, 335
AspS9I	GGNCC	9 cut(s)	73, 117, 135, 163, 180, 190, 208, 295, 328
AsuHPI	GGTGA	4 cut(s)	244, 244, 265, 358
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	7 cut(s)	73, 117, 135, 163, 180, 208, 295
BaeGI	GKGCMC	1 cut(s)	359
BanI	GGYRCC	1 cut(s)	356
BanII	GRGCYC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	29
BceAI	ACGGC	1 cut(s)	49
BciT130I	CCWGG	3 cut(s)	167, 212, 256
BcoDI	GTCTC	2 cut(s)	25, 309
BfoI	RGCGCY	1 cut(s)	65
BglI	GCCNNNNNGGC	1 cut(s)	198
BisI	GCNGC	8 cut(s)	34, 43, 79, 193, 223, 331, 336, 339
BlsI	GCNGC	8 cut(s)	35, 44, 80, 194, 224, 332, 337, 340
Bme1390I	CCNGG	3 cut(s)	167, 212, 256
Bme18I	GGWCC	7 cut(s)	73, 117, 135, 163, 180, 208, 295
BmeRI	GACNNNNNGTC	2 cut(s)	115, 301
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	9 cut(s)	73, 117, 135, 163, 180, 190, 208, 295, 328
BmiI	GGNNCC	3 cut(s)	11, 181, 358
BmrFI	CCNGG	3 cut(s)	167, 212, 256
BmsI	GCATC	1 cut(s)	258
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
Bpu10I	CCTNAGC	1 cut(s)	281
BsaBI	GATNNNNATC	1 cut(s)	239
BsaJI	CCNNGG	3 cut(s)	255, 324, 372
BsaWI	WCCGGW	2 cut(s)	114, 132
Bsc4I	CCNNNNNNNGG	3 cut(s)	114, 229, 282
Bse118I	RCCGGY	1 cut(s)	142
Bse8I	GATNNNNATC	1 cut(s)	239
BseBI	CCWGG	3 cut(s)	167, 212, 256
BseDI	CCNNGG	3 cut(s)	255, 324, 372
BseJI	GATNNNNATC	1 cut(s)	239
BseLI	CCNNNNNNNGG	3 cut(s)	114, 229, 282
BseMII	CTCAG	1 cut(s)	295
BsePI	GCGCGC	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	94
BseSI	GKGCMC	1 cut(s)	359
Bsh1236I	CGCG	6 cut(s)	18, 81, 95, 177, 195, 333
Bsh1285I	CGRYCG	1 cut(s)	316
BshFI	GGCC	3 cut(s)	192, 323, 330
BshNI	GGYRCC	1 cut(s)	356
BsiEI	CGRYCG	1 cut(s)	316
BsiHKAI	GWGCWC	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	3 cut(s)	115, 133, 143
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	3 cut(s)	114, 229, 282
BsmAI	GTCTC	2 cut(s)	25, 309
BsmBI	CGTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	3 cut(s)	192, 323, 330
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	2 cut(s)	29, 359
Bsp143I	GATC	1 cut(s)	234
BspANI	GGCC	3 cut(s)	192, 323, 330
BspCNI	CTCAG	1 cut(s)	294
BspFNI	CGCG	6 cut(s)	18, 81, 95, 177, 195, 333
BspLI	GGNNCC	3 cut(s)	11, 181, 358
BspPI	GGATC	1 cut(s)	229
BspT107I	GGYRCC	1 cut(s)	356
BsrFI	RCCGGY	1 cut(s)	142
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	3 cut(s)	255, 324, 372
BssHII	GCGCGC	1 cut(s)	93
BssMI	GATC	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	3 cut(s)	167, 212, 256
Bst4CI	ACNGT	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	281
BstFNI	CGCG	6 cut(s)	18, 81, 95, 177, 195, 333
BstH2I	RGCGCY	1 cut(s)	65
BstHHI	GCGC	7 cut(s)	64, 95, 97, 150, 177, 249, 335
BstKTI	GATC	1 cut(s)	237
BstMAI	GTCTC	2 cut(s)	25, 309
BstMBI	GATC	1 cut(s)	234
BstMCI	CGRYCG	1 cut(s)	316
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 33, 39, 42, 198
BstNI	CCWGG	3 cut(s)	167, 212, 256
BstSCI	CCNGG	3 cut(s)	165, 210, 254
BstSLI	GKGCMC	1 cut(s)	359
BstUI	CGCG	6 cut(s)	18, 81, 95, 177, 195, 333
BsuRI	GGCC	3 cut(s)	192, 323, 330
Cac8I	GCNNGC	1 cut(s)	95
CfoI	GCGC	7 cut(s)	64, 95, 97, 150, 177, 249, 335
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	9 cut(s)	73, 117, 135, 163, 180, 190, 208, 295, 328
CpoI	CGGWCCG	1 cut(s)	73
CseI	GACGC	2 cut(s)	7, 70
Csp6I	GTAC	2 cut(s)	124, 217
CspI	CGGWCCG	1 cut(s)	73
CviAII	CATG	2 cut(s)	139, 382
CviJI	RGCY	8 cut(s)	27, 42, 50, 192, 280, 286, 323, 330
CviKI_1	RGCY	8 cut(s)	27, 42, 50, 192, 280, 286, 323, 330
CviQI	GTAC	2 cut(s)	124, 217
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	1 cut(s)	236
DpnII	GATC	1 cut(s)	234
DrdI	GACNNNNNNGTC	1 cut(s)	161
DriI	GACNNNNNGTC	2 cut(s)	115, 301
DseDI	GACNNNNNNGTC	1 cut(s)	161
Eam1105I	GACNNNNNGTC	2 cut(s)	115, 301
EciI	GGCGGA	1 cut(s)	65
Ecl136II	GAGCTC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	29
Eco32I	GATATC	1 cut(s)	379
Eco47I	GGWCC	7 cut(s)	73, 117, 135, 163, 180, 208, 295
Eco53kI	GAGCTC	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	180
EcoRII	CCWGG	3 cut(s)	165, 210, 254
EcoRV	GATATC	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	2 cut(s)	142, 385
FaiI	YATR	2 cut(s)	140, 383
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	2 cut(s)	138, 381
FauI	CCCGC	3 cut(s)	23, 38, 170
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	8 cut(s)	34, 43, 79, 193, 223, 331, 336, 339
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	8 cut(s)	34, 43, 79, 193, 223, 331, 336, 339
FspI	TGCGCA	1 cut(s)	149
GlaI	GCGC	7 cut(s)	63, 94, 96, 149, 176, 248, 334
GluI	GCNGC	8 cut(s)	34, 43, 79, 193, 223, 331, 336, 339
HaeII	RGCGCY	1 cut(s)	65
HaeIII	GGCC	3 cut(s)	192, 323, 330
HapII	CCGG	3 cut(s)	115, 133, 143
HgaI	GACGC	2 cut(s)	7, 70
HhaI	GCGC	7 cut(s)	64, 95, 97, 150, 177, 249, 335
Hin1II	CATG	2 cut(s)	142, 385
Hin6I	GCGC	7 cut(s)	62, 93, 95, 148, 175, 247, 333
HinP1I	GCGC	7 cut(s)	62, 93, 95, 148, 175, 247, 333
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HpaII	CCGG	3 cut(s)	115, 133, 143
HphI	GGTGA	4 cut(s)	244, 244, 265, 358
Hpy166II	GTNNAC	4 cut(s)	126, 217, 366, 394
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	2 cut(s)	22, 85
Hpy8I	GTNNAC	4 cut(s)	126, 217, 366, 394
Hpy99I	CGWCG	3 cut(s)	70, 73, 161
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	1 cut(s)	385
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 33, 39, 42, 198
HpyF3I	CTNAG	1 cut(s)	281
Hsp92II	CATG	2 cut(s)	142, 385
HspAI	GCGC	7 cut(s)	62, 93, 95, 148, 175, 247, 333
Kzo9I	GATC	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	32
LweI	GCATC	1 cut(s)	258
MalI	GATC	1 cut(s)	236
MboI	GATC	1 cut(s)	234
MboII	GAAGA	1 cut(s)	16
MhlI	GDGCHC	2 cut(s)	29, 359
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	6 cut(s)	108, 115, 122, 154, 190, 367
MslI	CAYNNNNRTG	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	3 cut(s)	115, 133, 143
MspR9I	CCNGG	3 cut(s)	167, 212, 256
MvaI	CCWGG	3 cut(s)	167, 212, 256
MvnI	CGCG	6 cut(s)	18, 81, 95, 177, 195, 333
MwoI	GCNNNNNNNGC	5 cut(s)	24, 33, 39, 42, 198
NdeII	GATC	1 cut(s)	234
NlaIII	CATG	2 cut(s)	142, 385
NlaIV	GGNNCC	3 cut(s)	11, 181, 358
NmeAIII	GCCGAG	1 cut(s)	397
NsbI	TGCGCA	1 cut(s)	149
PaeR7I	CTCGAG	1 cut(s)	22
PauI	GCGCGC	1 cut(s)	93
PflFI	GACNNNGTC	1 cut(s)	161
PkrI	GCNGC	8 cut(s)	35, 44, 80, 194, 224, 332, 337, 340
PpuMI	RGGWCCY	1 cut(s)	180
Psp124BI	GAGCTC	1 cut(s)	29
Psp5II	RGGWCCY	1 cut(s)	180
Psp6I	CCWGG	3 cut(s)	165, 210, 254
PspGI	CCWGG	3 cut(s)	165, 210, 254
PspN4I	GGNNCC	3 cut(s)	11, 181, 358
PspPI	GGNCC	9 cut(s)	73, 117, 135, 163, 180, 190, 208, 295, 328
PspPPI	RGGWCCY	1 cut(s)	180
PsyI	GACNNNGTC	1 cut(s)	161
PteI	GCGCGC	1 cut(s)	93
RsaI	GTAC	2 cut(s)	125, 218
RsaNI	GTAC	2 cut(s)	124, 217
RseI	CAYNNNNRTG	1 cut(s)	143
Rsr2I	CGGWCCG	1 cut(s)	73
RsrII	CGGWCCG	1 cut(s)	73
SacI	GAGCTC	1 cut(s)	29
SalI	GTCGAC	1 cut(s)	392
SatI	GCNGC	8 cut(s)	34, 43, 79, 193, 223, 331, 336, 339
Sau3AI	GATC	1 cut(s)	234
Sau96I	GGNCC	9 cut(s)	73, 117, 135, 163, 180, 190, 208, 295, 328
ScrFI	CCNGG	3 cut(s)	167, 212, 256
SduI	GDGCHC	2 cut(s)	29, 359
SetI	ASST	9 cut(s)	29, 114, 165, 171, 185, 207, 216, 267, 282
SfaNI	GCATC	1 cut(s)	258
Sfr274I	CTCGAG	1 cut(s)	22
SinI	GGWCC	7 cut(s)	73, 117, 135, 163, 180, 208, 295
SlaI	CTCGAG	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	3 cut(s)	165, 210, 254
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	5 cut(s)	23, 243, 288, 312, 393
TaqII	GACCGA	1 cut(s)	61
TatI	WGTACW	1 cut(s)	123
TauI	GCSGC	8 cut(s)	36, 45, 81, 195, 225, 333, 338, 341
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	161
VpaK11BI	GGWCC	7 cut(s)	73, 117, 135, 163, 180, 208, 295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262
XhoI	CTCGAG	1 cut(s)	22
XmiI	GTMKAC	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.