Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002325

Physical Location & Seq

Genomic Coordinates Reverse (-)

19347851 .. 19348204

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG205900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAGCGCGCCGCTCTCCTCGGACCTCCGGTCGAAGTACAACGTCCGGTCCATGCCGGTGCGCAAGGACGACGAGGTCCAGGTGGTGCGTGGGACCTACAAGGGCCGGGAGGGCAAGGTGGTGCAGGTCTACCGCCGCAAGTGGGTCATCCACATCGAGCGGATCACCCGCGAGAAGGTCAACGGATCCACGGTCAACGTCGGAATCAACCCGTCCAAGGTCCTCATCACCAAGCTCAGGTTGGACAAGGACCGCAAGTCGCTGCTGGACCGCAAGGCCAAGGGAAGAGCCGCCGCCGATAAGGACAAAGGCACCAAGTTCACGGCGGAGGACATCATGCAGAACGTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L26

Protein Analysis

117

Amino Acids

13.36

Weight (kDa)

10.28

Isoelectric Point (pI)

28.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L26	PF16906	1 - 92	1.6e-25	Ribosomal proteins L26 eukaryotic, L24P archaeal
KOW	PF00467	22 - 53	1.1e-08	KOW motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49910 AT5G67510
fragaria_vesca	FvH4_1g17640 FvH4_5g24274 FvH4_6g36980
malus_domestica	MD02G1185200.v1.1 MD06G1158400.v1.1 MD12G1060600.v1.1 MD12G1243600.v1.1 MD14G1120400.v1.1 MD16G1170200.v1.1
prunus_persica	Prupe.3G002900_v2.0.a1 Prupe.6G221600_v2.0.a1
pyrus_communis	pycom02g15010 pycom06g14140 pycom14g13750
rosa_chinensis	RchiOBHm_Chr2g0107961 RchiOBHm_Chr2g0110121 RchiOBHm_Chr2g0149501
rosa_laevigata	RLG00000017629 RLG00000020414
rosa_multiflora	Rmu_sc0001484.1_g000030 Rmu_sc0005278.1_g000014 Rmu_sc0006867.1_g000007 Rmu_sc0008619.1_g000004
rosa_roxburghii	Rroxscaffold_2G00094390 Rroxscaffold_2G00098050 Rroxscaffold_2G00135780
rosa_rugosa	Rorug02G0149000 Rorug02G0412000 Rorug04G0124600
rosa_samantha	Rh2AG198300 Rh2AG472100 Rh2BG211100 Rh2BG484200 Rh2CG202900 Rh2CG219800 Rh2CG458000 Rh2DG205900 Rh2DG493400
rosa_wichuraiana	Rw2G015730 Rw2G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
Acc16I	TGCGCA	1 cut(s)	62
Acc36I	ACCTGC	1 cut(s)	115
AccB1I	GGYRCC	1 cut(s)	311
AccBSI	CCGCTC	2 cut(s)	13, 160
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	2 cut(s)	8, 171
AclWI	GGATC	3 cut(s)	170, 180, 193
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	4 cut(s)	142, 175, 217, 237
AhdI	GACNNNNNGTC	2 cut(s)	28, 256
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	1 cut(s)	235
AluI	AGCT	1 cut(s)	235
AlwI	GGATC	3 cut(s)	170, 180, 193
AoxI	GGCC	2 cut(s)	103, 276
ApeKI	GCWGC	1 cut(s)	262
AspLEI	GCGC	3 cut(s)	8, 10, 63
AspS9I	GGNCC	8 cut(s)	22, 48, 76, 93, 103, 220, 250, 268
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	2 cut(s)	157, 220
AvaII	GGWCC	7 cut(s)	22, 48, 76, 93, 220, 250, 268
BamHI	GGATCC	1 cut(s)	185
BanI	GGYRCC	1 cut(s)	311
BbvI	GCAGC	1 cut(s)	249
BceAI	ACGGC	1 cut(s)	339
BciT130I	CCWGG	1 cut(s)	80
BcnI	CCSGG	1 cut(s)	107
BfuAI	ACCTGC	1 cut(s)	115
BglI	GCCNNNNNGGC	1 cut(s)	111
BisI	GCNGC	5 cut(s)	11, 136, 263, 291, 294
BlsI	GCNGC	5 cut(s)	12, 137, 264, 292, 295
Bme1390I	CCNGG	2 cut(s)	80, 107
Bme18I	GGWCC	7 cut(s)	22, 48, 76, 93, 220, 250, 268
BmeRI	GACNNNNNGTC	2 cut(s)	28, 256
BmgT120I	GGNCC	8 cut(s)	22, 48, 76, 93, 103, 220, 250, 268
BmiI	GGNNCC	3 cut(s)	94, 187, 313
BmrFI	CCNGG	2 cut(s)	80, 107
Bpu10I	CCTNAGC	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	107
BsaJI	CCNNGG	4 cut(s)	18, 189, 216, 279
BsaWI	WCCGGW	2 cut(s)	27, 45
Bsc4I	CCNNNNNNNGG	4 cut(s)	142, 175, 217, 237
Bse118I	RCCGGY	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	4 cut(s)	18, 189, 216, 279
BseGI	GGATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	4 cut(s)	142, 175, 217, 237
BseMII	CTCAG	1 cut(s)	250
BsePI	GCGCGC	1 cut(s)	6
BseRI	GAGGAG	1 cut(s)	7
BseXI	GCAGC	1 cut(s)	249
BsgI	GTGCAG	1 cut(s)	143
Bsh1236I	CGCG	2 cut(s)	8, 171
Bsh1285I	CGRYCG	1 cut(s)	32
BshFI	GGCC	2 cut(s)	105, 278
BshNI	GGYRCC	1 cut(s)	311
BsiEI	CGRYCG	1 cut(s)	32
BsiSI	CCGG	4 cut(s)	28, 46, 56, 106
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	4 cut(s)	142, 175, 217, 237
BsmFI	GGGAC	1 cut(s)	106
BsnI	GGCC	2 cut(s)	105, 278
Bsp143I	GATC	2 cut(s)	162, 185
BspANI	GGCC	2 cut(s)	105, 278
BspCNI	CTCAG	1 cut(s)	249
BspFNI	CGCG	2 cut(s)	8, 171
BspLI	GGNNCC	3 cut(s)	94, 187, 313
BspMI	ACCTGC	1 cut(s)	115
BspPI	GGATC	3 cut(s)	170, 180, 193
BspQI	GCTCTTC	1 cut(s)	280
BspT107I	GGYRCC	1 cut(s)	311
BsrBI	CCGCTC	2 cut(s)	13, 160
BsrFI	RCCGGY	1 cut(s)	55
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	4 cut(s)	18, 189, 216, 279
BssHII	GCGCGC	1 cut(s)	6
BssMI	GATC	2 cut(s)	162, 185
BssT1I	CCWWGG	2 cut(s)	216, 279
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	1 cut(s)	280
BstC8I	GCNNGC	1 cut(s)	8
BstDEI	CTNAG	1 cut(s)	236
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	147
BstFNI	CGCG	2 cut(s)	8, 171
BstHHI	GCGC	3 cut(s)	8, 10, 63
BstKTI	GATC	2 cut(s)	165, 188
BstMBI	GATC	2 cut(s)	162, 185
BstMCI	CGRYCG	1 cut(s)	32
BstMWI	GCNNNNNNNGC	1 cut(s)	111
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	2 cut(s)	78, 105
BstUI	CGCG	2 cut(s)	8, 171
BstV1I	GCAGC	1 cut(s)	249
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BsuRI	GGCC	2 cut(s)	105, 278
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	147
BveI	ACCTGC	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	8
CfoI	GCGC	3 cut(s)	8, 10, 63
Cfr10I	RCCGGY	1 cut(s)	55
Cfr13I	GGNCC	8 cut(s)	22, 48, 76, 93, 103, 220, 250, 268
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	2 cut(s)	52, 337
CviJI	RGCY	4 cut(s)	105, 235, 278, 290
CviKI_1	RGCY	4 cut(s)	105, 235, 278, 290
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	2 cut(s)	164, 187
DpnII	GATC	2 cut(s)	162, 185
DrdI	GACNNNNNNGTC	1 cut(s)	74
DriI	GACNNNNNGTC	2 cut(s)	28, 256
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	280
Eam1105I	GACNNNNNGTC	2 cut(s)	28, 256
EarI	CTCTTC	1 cut(s)	280
EciI	GGCGGA	1 cut(s)	341
Eco130I	CCWWGG	2 cut(s)	216, 279
Eco47I	GGWCC	7 cut(s)	22, 48, 76, 93, 220, 250, 268
EcoO109I	RGGNCCY	2 cut(s)	93, 220
EcoRII	CCWGG	1 cut(s)	78
EcoT14I	CCWWGG	2 cut(s)	216, 279
ErhI	CCWWGG	2 cut(s)	216, 279
FaeI	CATG	2 cut(s)	55, 340
FaiI	YATR	2 cut(s)	53, 338
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	2 cut(s)	51, 336
FauI	CCCGC	1 cut(s)	176
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	5 cut(s)	11, 136, 263, 291, 294
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	5 cut(s)	11, 136, 263, 291, 294
FspI	TGCGCA	1 cut(s)	62
GlaI	GCGC	3 cut(s)	7, 9, 62
GluI	GCNGC	5 cut(s)	11, 136, 263, 291, 294
HaeIII	GGCC	2 cut(s)	105, 278
HapII	CCGG	4 cut(s)	28, 46, 56, 106
HhaI	GCGC	3 cut(s)	8, 10, 63
Hin1II	CATG	2 cut(s)	55, 340
Hin6I	GCGC	3 cut(s)	6, 8, 61
HinP1I	GCGC	3 cut(s)	6, 8, 61
HincII	GTYRAC	2 cut(s)	181, 196
HindII	GTYRAC	2 cut(s)	181, 196
HinfI	GANTC	1 cut(s)	204
HpaII	CCGG	4 cut(s)	28, 46, 56, 106
HphI	GGTGA	2 cut(s)	157, 220
Hpy166II	GTNNAC	4 cut(s)	130, 181, 196, 321
Hpy188I	TCNGA	2 cut(s)	22, 203
Hpy8I	GTNNAC	4 cut(s)	130, 181, 196, 321
Hpy99I	CGWCG	2 cut(s)	74, 203
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	3 cut(s)	42, 198, 345
HpyCH4V	TGCA	2 cut(s)	124, 340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	111
HpyF3I	CTNAG	1 cut(s)	236
HpySE526I	ACGT	3 cut(s)	42, 198, 345
Hsp92II	CATG	2 cut(s)	55, 340
HspAI	GCGC	3 cut(s)	6, 8, 61
Kzo9I	GATC	2 cut(s)	162, 185
LguI	GCTCTTC	1 cut(s)	280
LpnPI	CCDG	9 cut(s)	41, 59, 65, 69, 92, 110, 119, 223, 251
Lsp1109I	GCAGC	1 cut(s)	249
MaeII	ACGT	3 cut(s)	42, 198, 345
MalI	GATC	2 cut(s)	164, 187
MbiI	CCGCTC	2 cut(s)	13, 160
MboI	GATC	2 cut(s)	162, 185
MboII	GAAGA	1 cut(s)	297
MflI	RGATCY	1 cut(s)	185
MmeI	TCCRAC	2 cut(s)	181, 222
MnlI	CCTC	6 cut(s)	28, 35, 67, 103, 233, 322
MslI	CAYNNNNRTG	1 cut(s)	56
MspI	CCGG	4 cut(s)	28, 46, 56, 106
MspR9I	CCNGG	2 cut(s)	80, 107
MvaI	CCWGG	1 cut(s)	80
MvnI	CGCG	2 cut(s)	8, 171
MwoI	GCNNNNNNNGC	1 cut(s)	111
NciI	CCSGG	1 cut(s)	107
NdeII	GATC	2 cut(s)	162, 185
NlaIII	CATG	2 cut(s)	55, 340
NlaIV	GGNNCC	3 cut(s)	94, 187, 313
NsbI	TGCGCA	1 cut(s)	62
PauI	GCGCGC	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	204
PflFI	GACNNNGTC	1 cut(s)	74
PkrI	GCNGC	5 cut(s)	12, 137, 264, 292, 295
PpuMI	RGGWCCY	2 cut(s)	93, 220
Psp5II	RGGWCCY	2 cut(s)	93, 220
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	3 cut(s)	94, 187, 313
PspPI	GGNCC	8 cut(s)	22, 48, 76, 93, 103, 220, 250, 268
PspPPI	RGGWCCY	2 cut(s)	93, 220
PsuI	RGATCY	1 cut(s)	185
PsyI	GACNNNGTC	1 cut(s)	74
PteI	GCGCGC	1 cut(s)	6
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	56
SapI	GCTCTTC	1 cut(s)	280
SatI	GCNGC	5 cut(s)	11, 136, 263, 291, 294
Sau3AI	GATC	2 cut(s)	162, 185
Sau96I	GGNCC	8 cut(s)	22, 48, 76, 93, 103, 220, 250, 268
ScrFI	CCNGG	2 cut(s)	80, 107
SinI	GGWCC	7 cut(s)	22, 48, 76, 93, 220, 250, 268
SmiMI	CAYNNNNRTG	1 cut(s)	56
StyD4I	CCNGG	2 cut(s)	78, 105
StyI	CCWWGG	2 cut(s)	216, 279
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	3 cut(s)	45, 201, 348
TaqI	TCGA	2 cut(s)	32, 156
TatI	WGTACW	1 cut(s)	36
TauI	GCSGC	4 cut(s)	13, 138, 293, 296
TfiI	GAWTC	1 cut(s)	204
TseI	GCWGC	1 cut(s)	262
TspGWI	ACGGA	1 cut(s)	198
Tth111I	GACNNNGTC	1 cut(s)	74
VpaK11BI	GGWCC	7 cut(s)	22, 48, 76, 93, 220, 250, 268
XcmI	CCANNNNNNNNNTGG	2 cut(s)	86, 238
XmiI	GTMKAC	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.