MD14G1120400.v1.1

regulation of translation involved in cellular response to UV

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0002325
Physical Location & Seq
Forward (+)
19469954 .. 19470184
231 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1120400.v1.1.491

Sequence Viewer

Length: 231 bp
ATGCCGGTGCGCAAGGACGACGAGGTCCACATCGAGCGGATCACCCGAGAGAAGGTGAACGGGTCCACCGTCAATGTCGGCATCAACCCCTCCAAGGTCGTCATCACCAAGCTCCGCCTCGACAAGGACCGCAAGTCTCTGCTGGACCGCAAGGCCAAGGGCCGCGCCGTCGCTGACAAGGACAAAGGCACCAAGTTCACCGCAGAGGATATCATGCAAAACGTCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000184 GO:0000278 GO:0000956 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006417 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006974 GO:0006977 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009266 GO:0009314 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009628 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010212 GO:0010332 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010948 GO:0015031 GO:0015833 GO:0015934 GO:0016020 GO:0016070 GO:0016071 GO:0016072 GO:0019222 GO:0019439 GO:0019538 GO:0022402 GO:0022613 GO:0022625 GO:0022626 GO:0023051 GO:0023052 GO:0023056 GO:0030330 GO:0030424 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031570 GO:0031571 GO:0031667 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033036 GO:0033267 GO:0033365 GO:0033554 GO:0034248 GO:0034250 GO:0034470 GO:0034613 GO:0034641 GO:0034644 GO:0034645 GO:0034655 GO:0034660 GO:0035556 GO:0042254 GO:0042273 GO:0042594 GO:0042770 GO:0042788 GO:0042886 GO:0042981 GO:0042995 GO:0043005 GO:0043043 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043195 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043516 GO:0043517 GO:0043603 GO:0043604 GO:0043679 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044306 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045047 GO:0045184 GO:0045202 GO:0045727 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0046700 GO:0046907 GO:0048027 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0070972 GO:0071156 GO:0071158 GO:0071214 GO:0071478 GO:0071479 GO:0071480 GO:0071482 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0072594 GO:0072599 GO:0072657 GO:0080090 GO:0080134 GO:0080135 GO:0090068 GO:0090150 GO:0090304 GO:0097159 GO:0097458 GO:0098588 GO:0098793 GO:0098805 GO:0104004 GO:0120025 GO:0120038 GO:0150034 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901796 GO:1901798 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902162 GO:1902164 GO:1902165 GO:1902167 GO:1902229 GO:1902231 GO:1902253 GO:1902255 GO:1902400 GO:1902402 GO:1902403 GO:1902531 GO:1902533 GO:1902806 GO:1902807 GO:1903047 GO:1904803 GO:1990904 GO:1990928 GO:2000045 GO:2000112 GO:2000134 GO:2001020 GO:2001022 GO:2001233 GO:2001235 GO:2001242 GO:2001244
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KOW Ribosomal_L26

Protein Analysis

77

Amino Acids

8.59

Weight (kDa)

9.75

Isoelectric Point (pI)

16.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L26 PF16906 2 - 51 3.1e-15 Ribosomal proteins L26 eukaryotic, L24P archaeal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 23
Acc16I TGCGCA 1 cut(s) 11
AccB1I GGYRCC 1 cut(s) 188
AccBSI CCGCTC 1 cut(s) 37
AccII CGCG 1 cut(s) 165
AciI CCGC 6 cut(s) 37, 115, 130, 148, 163, 201
AclWI GGATC 1 cut(s) 47
AfiI CCNNNNNNNGG 3 cut(s) 52, 94, 124
AhdI GACNNNNNGTC 1 cut(s) 133
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 1 cut(s) 47
Ama87I CYCGRG 1 cut(s) 45
AoxI GGCC 2 cut(s) 153, 160
AspLEI GCGC 2 cut(s) 12, 167
AspS9I GGNCC 5 cut(s) 25, 63, 127, 145, 160
AsuHPI GGTGA 4 cut(s) 34, 67, 97, 190
AvaI CYCGRG 1 cut(s) 45
AvaII GGWCC 4 cut(s) 25, 63, 127, 145
BanI GGYRCC 1 cut(s) 188
BceAI ACGGC 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 141
BisI GCNGC 1 cut(s) 163
BlsI GCNGC 1 cut(s) 164
Bme18I GGWCC 4 cut(s) 25, 63, 127, 145
BmeRI GACNNNNNGTC 1 cut(s) 133
BmeT110I CYCGRG 1 cut(s) 45
BmgT120I GGNCC 5 cut(s) 25, 63, 127, 145, 160
BmiI GGNNCC 2 cut(s) 64, 190
BmsI GCATC 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 93, 156
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 94, 124
Bse118I RCCGGY 1 cut(s) 4
BseDI CCNNGG 2 cut(s) 93, 156
BseLI CCNNNNNNNGG 3 cut(s) 52, 94, 124
Bsh1236I CGCG 1 cut(s) 165
BshFI GGCC 2 cut(s) 155, 162
BshNI GGYRCC 1 cut(s) 188
BsiHKCI CYCGRG 1 cut(s) 45
BsiSI CCGG 1 cut(s) 5
BslI CCNNNNNNNGG 3 cut(s) 52, 94, 124
BsmAI GTCTC 1 cut(s) 141
BsnI GGCC 2 cut(s) 155, 162
BsoBI CYCGRG 1 cut(s) 45
Bsp143I GATC 1 cut(s) 39
BspACI CCGC 6 cut(s) 37, 115, 130, 148, 163, 201
BspANI GGCC 2 cut(s) 155, 162
BspFNI CGCG 1 cut(s) 165
BspLI GGNNCC 2 cut(s) 64, 190
BspPI GGATC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 188
BsrBI CCGCTC 1 cut(s) 37
BsrFI RCCGGY 1 cut(s) 4
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 2 cut(s) 93, 156
BssMI GATC 1 cut(s) 39
BssT1I CCWWGG 2 cut(s) 93, 156
Bst4CI ACNGT 1 cut(s) 70
BstENI CCTNNNNNAGG 1 cut(s) 122
BstFNI CGCG 1 cut(s) 165
BstHHI GCGC 2 cut(s) 12, 167
BstKTI GATC 1 cut(s) 42
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 1 cut(s) 39
BstUI CGCG 1 cut(s) 165
BsuRI GGCC 2 cut(s) 155, 162
CfoI GCGC 2 cut(s) 12, 167
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 5 cut(s) 25, 63, 127, 145, 160
CviAII CATG 1 cut(s) 214
CviJI RGCY 3 cut(s) 112, 155, 162
CviKI_1 RGCY 3 cut(s) 112, 155, 162
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
DrdI GACNNNNNNGTC 1 cut(s) 23
DriI GACNNNNNGTC 1 cut(s) 133
DseDI GACNNNNNNGTC 1 cut(s) 23
Eam1105I GACNNNNNGTC 1 cut(s) 133
EciI GGCGGA 1 cut(s) 104
Eco130I CCWWGG 2 cut(s) 93, 156
Eco32I GATATC 1 cut(s) 211
Eco47I GGWCC 4 cut(s) 25, 63, 127, 145
Eco88I CYCGRG 1 cut(s) 45
EcoNI CCTNNNNNAGG 1 cut(s) 122
EcoRV GATATC 1 cut(s) 211
EcoT14I CCWWGG 2 cut(s) 93, 156
ErhI CCWWGG 2 cut(s) 93, 156
FaeI CATG 1 cut(s) 217
FaiI YATR 1 cut(s) 215
FatI CATG 1 cut(s) 213
Fnu4HI GCNGC 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 163
FspI TGCGCA 1 cut(s) 11
GlaI GCGC 2 cut(s) 11, 166
GluI GCNGC 1 cut(s) 163
HaeIII GGCC 2 cut(s) 155, 162
HapII CCGG 1 cut(s) 5
HhaI GCGC 2 cut(s) 12, 167
Hin1II CATG 1 cut(s) 217
Hin6I GCGC 2 cut(s) 10, 165
HinP1I GCGC 2 cut(s) 10, 165
HpaII CCGG 1 cut(s) 5
HphI GGTGA 4 cut(s) 34, 67, 97, 190
Hpy166II GTNNAC 4 cut(s) 28, 58, 66, 198
Hpy8I GTNNAC 4 cut(s) 28, 58, 66, 198
Hpy99I CGWCG 3 cut(s) 23, 173, 227
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 1 cut(s) 217
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 1 cut(s) 217
HspAI GCGC 2 cut(s) 10, 165
Kzo9I GATC 1 cut(s) 39
LmnI GCTCC 1 cut(s) 117
LpnPI CCDG 2 cut(s) 18, 128
LweI GCATC 1 cut(s) 90
MaeII ACGT 1 cut(s) 222
MalI GATC 1 cut(s) 41
MbiI CCGCTC 1 cut(s) 37
MboI GATC 1 cut(s) 39
MnlI CCTC 4 cut(s) 16, 100, 128, 199
MspI CCGG 1 cut(s) 5
MvnI CGCG 1 cut(s) 165
NdeII GATC 1 cut(s) 39
NlaIII CATG 1 cut(s) 217
NlaIV GGNNCC 2 cut(s) 64, 190
NsbI TGCGCA 1 cut(s) 11
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PflFI GACNNNGTC 1 cut(s) 23
PkrI GCNGC 1 cut(s) 164
PspN4I GGNNCC 2 cut(s) 64, 190
PspPI GGNCC 5 cut(s) 25, 63, 127, 145, 160
PsyI GACNNNGTC 1 cut(s) 23
SatI GCNGC 1 cut(s) 163
Sau3AI GATC 1 cut(s) 39
Sau96I GGNCC 5 cut(s) 25, 63, 127, 145, 160
SetI ASST 5 cut(s) 27, 57, 99, 114, 225
SfaNI GCATC 1 cut(s) 90
SinI GGWCC 4 cut(s) 25, 63, 127, 145
SsiI CCGC 6 cut(s) 37, 115, 130, 148, 163, 201
StyI CCWWGG 2 cut(s) 93, 156
TaaI ACNGT 1 cut(s) 70
TaiI ACGT 1 cut(s) 225
TaqI TCGA 3 cut(s) 33, 120, 225
TauI GCSGC 1 cut(s) 165
Tth111I GACNNNGTC 1 cut(s) 23
VpaK11BI GGWCC 4 cut(s) 25, 63, 127, 145
XagI CCTNNNNNAGG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.