Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002325

Physical Location & Seq

Genomic Coordinates Forward (+)

13076404 .. 13089323

Gene Structure 12920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0149000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGGGGAAAAGAAGGTGACTATAATGATTCTGAAGGTTGACCTTCAGTGTGAGGAATGCTACAGGAAGGTCAAGCAAGTTCTCTGTAAATTCCCACAAATACAAGACCAGATGTACGACGAGAAGAACAACTTGGTGATCATCAAAGTGGTCTGCTGCAATCCTGAAAAGATCAGGGACAAGCTATGCTGCAAAGGAGGTGGCGTCATTAAGTGGATCGAGATCAAAGAGCCCGAGAAGCCCAAGCCTCTTCCTGCGCCGAAACCGAAACCGAAACCGAAACCTCCTCCGGCGTCGAAACCTGAACCGCCTCCGGAGCCGAAACCTGAGCCGCCTCCTGAGCCGAAACCTGAACCGCCTCCGGTTCCTGCTTGCCCTCTGCCTCTGGTTCCTGCTTGCCCTCGGCGGCCGTGTTGTTGGGATTGTTACCAAGGGCGTCCTGGTGGTCCCTGCGAAACTCGCCCTCCGCGGAGGCCAGTGAACCCGTGTTGTATGGATTGTTATGAAGGGCGTCCTGGTGGTCCCTGCGAAACTCGCCCTCCGCCGCGGCCGGTGAAACCGTGTTGCTCGGATTGTTACGAAGGGCGTCCTGGTGGTCCCTGCGAAACTTACCCTCGGCGGCCGGTGAACACGTGTTGTACGGATTGTTACGAAGGCCGTCCTGGTGGTCCCTGCGAAACTTACCCTCCGCGGCCGGTGAACACGTGTTGTACGGATTGTTACGAAGGCCGTCCTGGCGGTCCCTGCGAAACTGGGTATGGTTACGGAGGGCCTGTCCCTTACATACAGTATGATGGCCACTATGGAAGGCCGGTGTGTGATAGTTACGGCGGTGGGAGGAGCAATACCACTAGTTACTGCGTGACCCGCCCCGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L26

Protein Analysis

305

Amino Acids

33.7

Weight (kDa)

8.28

Isoelectric Point (pI)

66.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49910 AT5G67510
fragaria_vesca	FvH4_1g17640 FvH4_5g24274 FvH4_6g36980
malus_domestica	MD02G1185200.v1.1 MD06G1158400.v1.1 MD12G1060600.v1.1 MD12G1243600.v1.1 MD14G1120400.v1.1 MD16G1170200.v1.1
prunus_persica	Prupe.3G002900_v2.0.a1 Prupe.6G221600_v2.0.a1
pyrus_communis	pycom02g15010 pycom06g14140 pycom14g13750
rosa_chinensis	RchiOBHm_Chr2g0107961 RchiOBHm_Chr2g0110121 RchiOBHm_Chr2g0149501
rosa_laevigata	RLG00000017629 RLG00000020414
rosa_multiflora	Rmu_sc0001484.1_g000030 Rmu_sc0005278.1_g000014 Rmu_sc0006867.1_g000007 Rmu_sc0008619.1_g000004
rosa_roxburghii	Rroxscaffold_2G00094390 Rroxscaffold_2G00098050 Rroxscaffold_2G00135780
rosa_rugosa	Rorug02G0149000 Rorug02G0412000 Rorug04G0124600
rosa_samantha	Rh2AG198300 Rh2AG472100 Rh2BG211100 Rh2BG484200 Rh2CG202900 Rh2CG219800 Rh2CG458000 Rh2DG205900 Rh2DG493400
rosa_wichuraiana	Rw2G015730 Rw2G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	469, 547, 691
AccIII	TCCGGA	1 cut(s)	313
AclWI	GGATC	1 cut(s)	224
AcoI	YGGCCR	5 cut(s)	407, 548, 620, 692, 796
AcsI	RAATTY	1 cut(s)	89
AcuI	CTGAAG	2 cut(s)	29, 53
AcvI	CACGTG	2 cut(s)	633, 705
AcyI	GRCGYC	5 cut(s)	204, 293, 436, 511, 586
AfaI	GTAC	3 cut(s)	116, 640, 712
AflIII	ACRYGT	4 cut(s)	630, 632, 702, 704
AhlI	ACTAGT	1 cut(s)	851
AjnI	CCWGG	5 cut(s)	439, 514, 589, 661, 733
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	1 cut(s)	184
AluI	AGCT	1 cut(s)	184
AlwI	GGATC	1 cut(s)	224
Ama87I	CYCGRG	1 cut(s)	233
Aor13HI	TCCGGA	1 cut(s)	313
ApeKI	GCWGC	2 cut(s)	156, 189
ApoI	RAATTY	1 cut(s)	89
AspLEI	GCGC	2 cut(s)	259, 908
AspS9I	GGNCC	6 cut(s)	446, 521, 596, 668, 740, 770
AsuHPI	GGTGA	5 cut(s)	28, 148, 565, 637, 709
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	5 cut(s)	446, 521, 596, 668, 740
BalI	TGGCCA	1 cut(s)	798
BanII	GRGCYC	1 cut(s)	234
BbrPI	CACGTG	2 cut(s)	633, 705
BbvI	GCAGC	2 cut(s)	143, 176
BccI	CCATC	2 cut(s)	788, 917
BceAI	ACGGC	4 cut(s)	394, 642, 714, 844
BciT130I	CCWGG	5 cut(s)	441, 516, 591, 663, 735
BclI	TGATCA	1 cut(s)	138
BcuI	ACTAGT	1 cut(s)	851
BfaI	CTAG	1 cut(s)	852
BfmI	CTRYAG	1 cut(s)	61
BglI	GCCNNNNNGGC	1 cut(s)	735
BisI	GCNGC	8 cut(s)	157, 190, 332, 407, 545, 548, 620, 692
BlsI	GCNGC	8 cut(s)	158, 191, 333, 408, 546, 549, 621, 693
Bme1390I	CCNGG	5 cut(s)	441, 516, 591, 663, 735
Bme18I	GGWCC	5 cut(s)	446, 521, 596, 668, 740
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	6 cut(s)	446, 521, 596, 668, 740, 770
BmiI	GGNNCC	8 cut(s)	318, 366, 390, 448, 523, 598, 670, 742
BmrFI	CCNGG	5 cut(s)	441, 516, 591, 663, 735
BmrI	ACTGGG	1 cut(s)	762
BmuI	ACTGGG	1 cut(s)	762
Bpu10I	CCTNAGC	2 cut(s)	327, 339
BsaAI	YACGTR	2 cut(s)	633, 705
BsaBI	GATNNNNATC	1 cut(s)	221
BsaHI	GRCGYC	5 cut(s)	204, 293, 436, 511, 586
BsaJI	CCNNGG	6 cut(s)	401, 430, 467, 545, 614, 689
BsaWI	WCCGGW	2 cut(s)	313, 361
Bse118I	RCCGGY	4 cut(s)	550, 622, 694, 811
Bse1I	ACTGG	2 cut(s)	476, 757
Bse8I	GATNNNNATC	1 cut(s)	221
BseAI	TCCGGA	1 cut(s)	313
BseBI	CCWGG	5 cut(s)	441, 516, 591, 663, 735
BseDI	CCNNGG	6 cut(s)	401, 430, 467, 545, 614, 689
BseJI	GATNNNNATC	1 cut(s)	221
BseMII	CTCAG	2 cut(s)	318, 330
BseNI	ACTGG	2 cut(s)	476, 757
BseRI	GAGGAG	2 cut(s)	276, 853
BseX3I	CGGCCG	4 cut(s)	407, 548, 620, 692
BseXI	GCAGC	2 cut(s)	143, 176
Bsh1236I	CGCG	3 cut(s)	469, 547, 691
Bsh1285I	CGRYCG	4 cut(s)	410, 551, 623, 695
BsiEI	CGRYCG	4 cut(s)	410, 551, 623, 695
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	7 cut(s)	290, 314, 362, 551, 623, 695, 812
BslFI	GGGAC	7 cut(s)	191, 432, 507, 582, 654, 726, 761
BsmFI	GGGAC	7 cut(s)	191, 432, 507, 582, 654, 726, 761
BsmI	GAATGC	1 cut(s)	62
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp13I	TCCGGA	1 cut(s)	313
Bsp143I	GATC	4 cut(s)	138, 171, 216, 222
BspCNI	CTCAG	2 cut(s)	319, 331
BspEI	TCCGGA	1 cut(s)	313
BspFNI	CGCG	3 cut(s)	469, 547, 691
BspLI	GGNNCC	8 cut(s)	318, 366, 390, 448, 523, 598, 670, 742
BspPI	GGATC	1 cut(s)	224
BsrFI	RCCGGY	4 cut(s)	550, 622, 694, 811
BsrI	ACTGG	2 cut(s)	476, 757
BssAI	RCCGGY	4 cut(s)	550, 622, 694, 811
BssECI	CCNNGG	6 cut(s)	401, 430, 467, 545, 614, 689
BssMI	GATC	4 cut(s)	138, 171, 216, 222
BssNI	GRCGYC	5 cut(s)	204, 293, 436, 511, 586
BssT1I	CCWWGG	1 cut(s)	430
Bst2UI	CCWGG	5 cut(s)	441, 516, 591, 663, 735
Bst4CI	ACNGT	2 cut(s)	561, 789
Bst6I	CTCTTC	1 cut(s)	255
BstACI	GRCGYC	5 cut(s)	204, 293, 436, 511, 586
BstBAI	YACGTR	2 cut(s)	633, 705
BstC8I	GCNNGC	3 cut(s)	373, 397, 904
BstDEI	CTNAG	2 cut(s)	327, 339
BstDSI	CCRYGG	3 cut(s)	467, 545, 689
BstFNI	CGCG	3 cut(s)	469, 547, 691
BstHHI	GCGC	2 cut(s)	259, 908
BstKTI	GATC	4 cut(s)	141, 174, 219, 225
BstMBI	GATC	4 cut(s)	138, 171, 216, 222
BstMCI	CGRYCG	4 cut(s)	410, 551, 623, 695
BstMWI	GCNNNNNNNGC	8 cut(s)	238, 316, 340, 459, 534, 735, 744, 867
BstNI	CCWGG	5 cut(s)	441, 516, 591, 663, 735
BstSCI	CCNGG	5 cut(s)	439, 514, 589, 661, 733
BstSFI	CTRYAG	1 cut(s)	61
BstUI	CGCG	3 cut(s)	469, 547, 691
BstV1I	GCAGC	2 cut(s)	143, 176
BstZI	CGGCCG	4 cut(s)	407, 548, 620, 692
BtgI	CCRYGG	3 cut(s)	467, 545, 689
BtsIMutI	CAGTG	3 cut(s)	53, 483, 889
Cac8I	GCNNGC	3 cut(s)	373, 397, 904
CfoI	GCGC	2 cut(s)	259, 908
Cfr10I	RCCGGY	4 cut(s)	550, 622, 694, 811
Cfr13I	GGNCC	6 cut(s)	446, 521, 596, 668, 740, 770
Cfr42I	CCGCGG	3 cut(s)	470, 548, 692
CseI	GACGC	5 cut(s)	193, 282, 425, 500, 575
Csp6I	GTAC	3 cut(s)	115, 639, 711
CspCI	CAANNNNNGTGG	2 cut(s)	181, 216
CviAII	CATG	1 cut(s)	913
CviQI	GTAC	3 cut(s)	115, 639, 711
DdeI	CTNAG	2 cut(s)	327, 339
DpnI	GATC	4 cut(s)	140, 173, 218, 224
DpnII	GATC	4 cut(s)	138, 171, 216, 222
EaeI	YGGCCR	5 cut(s)	407, 548, 620, 692, 796
EagI	CGGCCG	4 cut(s)	407, 548, 620, 692
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
EciI	GGCGGA	1 cut(s)	531
EclXI	CGGCCG	4 cut(s)	407, 548, 620, 692
Eco130I	CCWWGG	1 cut(s)	430
Eco24I	GRGCYC	1 cut(s)	234
Eco47I	GGWCC	5 cut(s)	446, 521, 596, 668, 740
Eco52I	CGGCCG	4 cut(s)	407, 548, 620, 692
Eco57I	CTGAAG	2 cut(s)	29, 53
Eco72I	CACGTG	2 cut(s)	633, 705
Eco88I	CYCGRG	1 cut(s)	233
EcoO109I	RGGNCCY	1 cut(s)	770
EcoRII	CCWGG	5 cut(s)	439, 514, 589, 661, 733
EcoT14I	CCWWGG	1 cut(s)	430
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	1 cut(s)	916
FaiI	YATR	9 cut(s)	23, 187, 494, 504, 759, 785, 792, 804, 914
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FaqI	GGGAC	7 cut(s)	191, 432, 507, 582, 654, 726, 761
FatI	CATG	1 cut(s)	912
FauI	CCCGC	1 cut(s)	875
FbaI	TGATCA	1 cut(s)	138
Fnu4HI	GCNGC	8 cut(s)	157, 190, 332, 407, 545, 548, 620, 692
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	8 cut(s)	157, 190, 332, 407, 545, 548, 620, 692
FspBI	CTAG	1 cut(s)	852
GlaI	GCGC	2 cut(s)	258, 907
GluI	GCNGC	8 cut(s)	157, 190, 332, 407, 545, 548, 620, 692
HapII	CCGG	7 cut(s)	290, 314, 362, 551, 623, 695, 812
HgaI	GACGC	5 cut(s)	193, 282, 425, 500, 575
HhaI	GCGC	2 cut(s)	259, 908
Hin1I	GRCGYC	5 cut(s)	204, 293, 436, 511, 586
Hin1II	CATG	1 cut(s)	916
Hin6I	GCGC	2 cut(s)	257, 906
HinP1I	GCGC	2 cut(s)	257, 906
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	7 cut(s)	290, 314, 362, 551, 623, 695, 812
HphI	GGTGA	5 cut(s)	28, 148, 565, 637, 709
Hpy166II	GTNNAC	4 cut(s)	40, 481, 628, 700
Hpy188I	TCNGA	2 cut(s)	33, 571
Hpy188III	TCNNGA	4 cut(s)	164, 220, 314, 338
Hpy8I	GTNNAC	4 cut(s)	40, 481, 628, 700
Hpy99I	CGWCG	2 cut(s)	122, 298
HpyAV	CCTTC	9 cut(s)	7, 28, 53, 61, 500, 575, 647, 719, 801
HpyCH4III	ACNGT	2 cut(s)	561, 789
HpyCH4IV	ACGT	2 cut(s)	632, 704
HpyCH4V	TGCA	2 cut(s)	159, 192
HpyF10VI	GCNNNNNNNGC	8 cut(s)	238, 316, 340, 459, 534, 735, 744, 867
HpyF3I	CTNAG	2 cut(s)	327, 339
HpySE526I	ACGT	2 cut(s)	632, 704
Hsp92I	GRCGYC	5 cut(s)	204, 293, 436, 511, 586
Hsp92II	CATG	1 cut(s)	916
HspAI	GCGC	2 cut(s)	257, 906
Kpn2I	TCCGGA	1 cut(s)	313
Ksp22I	TGATCA	1 cut(s)	138
KspI	CCGCGG	3 cut(s)	470, 548, 692
Kzo9I	GATC	4 cut(s)	138, 171, 216, 222
LmnI	GCTCC	2 cut(s)	316, 840
Lsp1109I	GCAGC	2 cut(s)	143, 176
MaeI	CTAG	1 cut(s)	852
MaeII	ACGT	2 cut(s)	632, 704
MaeIII	GTNAC	9 cut(s)	16, 425, 575, 647, 719, 761, 824, 854, 862
MalI	GATC	4 cut(s)	140, 173, 218, 224
MboI	GATC	4 cut(s)	138, 171, 216, 222
MboII	GAAGA	3 cut(s)	136, 242, 899
MhlI	GDGCHC	1 cut(s)	234
MlsI	TGGCCA	1 cut(s)	798
MluCI	AATT	1 cut(s)	89
MluNI	TGGCCA	1 cut(s)	798
Mox20I	TGGCCA	1 cut(s)	798
MroI	TCCGGA	1 cut(s)	313
MscI	TGGCCA	1 cut(s)	798
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	146
Msp20I	TGGCCA	1 cut(s)	798
MspA1I	CMGCKG	3 cut(s)	469, 547, 691
MspI	CCGG	7 cut(s)	290, 314, 362, 551, 623, 695, 812
MspR9I	CCNGG	5 cut(s)	441, 516, 591, 663, 735
Mva1269I	GAATGC	1 cut(s)	62
MvaI	CCWGG	5 cut(s)	441, 516, 591, 663, 735
MvnI	CGCG	3 cut(s)	469, 547, 691
MwoI	GCNNNNNNNGC	8 cut(s)	238, 316, 340, 459, 534, 735, 744, 867
NdeII	GATC	4 cut(s)	138, 171, 216, 222
NlaIII	CATG	1 cut(s)	916
NlaIV	GGNNCC	8 cut(s)	318, 366, 390, 448, 523, 598, 670, 742
NmeAIII	GCCGAG	2 cut(s)	382, 595
NmuCI	GTSAC	2 cut(s)	16, 862
PctI	GAATGC	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	8 cut(s)	158, 191, 333, 408, 546, 549, 621, 693
PmaCI	CACGTG	2 cut(s)	633, 705
PmlI	CACGTG	2 cut(s)	633, 705
Ppu21I	YACGTR	2 cut(s)	633, 705
Psp6I	CCWGG	5 cut(s)	439, 514, 589, 661, 733
PspCI	CACGTG	2 cut(s)	633, 705
PspGI	CCWGG	5 cut(s)	439, 514, 589, 661, 733
PspN4I	GGNNCC	8 cut(s)	318, 366, 390, 448, 523, 598, 670, 742
PspPI	GGNCC	6 cut(s)	446, 521, 596, 668, 740, 770
RsaI	GTAC	3 cut(s)	116, 640, 712
RsaNI	GTAC	3 cut(s)	115, 639, 711
RseI	CAYNNNNRTG	1 cut(s)	146
SacII	CCGCGG	3 cut(s)	470, 548, 692
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	8 cut(s)	157, 190, 332, 407, 545, 548, 620, 692
Sau3AI	GATC	4 cut(s)	138, 171, 216, 222
Sau96I	GGNCC	6 cut(s)	446, 521, 596, 668, 740, 770
ScrFI	CCNGG	5 cut(s)	441, 516, 591, 663, 735
SduI	GDGCHC	1 cut(s)	234
SfcI	CTRYAG	1 cut(s)	61
Sfr303I	CCGCGG	3 cut(s)	470, 548, 692
SgrBI	CCGCGG	3 cut(s)	470, 548, 692
SinI	GGWCC	5 cut(s)	446, 521, 596, 668, 740
SmiMI	CAYNNNNRTG	1 cut(s)	146
SpeI	ACTAGT	1 cut(s)	851
Sse9I	AATT	1 cut(s)	89
SspMI	CTAG	1 cut(s)	852
StyD4I	CCNGG	5 cut(s)	439, 514, 589, 661, 733
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	2 cut(s)	561, 789
TaiI	ACGT	2 cut(s)	635, 707
TaqI	TCGA	2 cut(s)	219, 296
TasI	AATT	1 cut(s)	89
TauI	GCSGC	6 cut(s)	334, 409, 547, 550, 622, 694
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	3 cut(s)	53, 483, 889
TseFI	GTSAC	2 cut(s)	16, 862
TseI	GCWGC	2 cut(s)	156, 189
Tsp45I	GTSAC	2 cut(s)	16, 862
TspDTI	ATGAA	1 cut(s)	519
TspGWI	ACGGA	3 cut(s)	656, 728, 780
TspRI	CASTG	3 cut(s)	53, 483, 889
VpaK11BI	GGWCC	5 cut(s)	446, 521, 596, 668, 740
XapI	RAATTY	1 cut(s)	89
XcmI	CCANNNNNNNNNTGG	1 cut(s)	437
XspI	CTAG	1 cut(s)	852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.