Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002325

Physical Location & Seq

Genomic Coordinates Reverse (-)

15609110 .. 15609451

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g24274.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGAGGGCGCAGCTCTCCTCCGACCTTCGCACCAAGTACAGTGTCCGGTCCATGCCGGTGCGCAAGGACGACGAGGTGTACCGCCGCAAGCGGGTGATCCACATCGAGCGCATCACCAGGGAGAAGGTGAACGGGTCAACGGTCAACGTCGGGATCAACCCTTCGAAGGTGGTGATCACCAAGCTCAGATTAGACAAGGACCGGAAGTCACTGCTGGACCGCACGGCCAAGGGACGCGCCGCCGCAGATAAGGACAAGGGCACCAAGTTCACCGCCGAGGATATCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L26

Protein Analysis

97

Amino Acids

11.03

Weight (kDa)

10.49

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L26	PF16906	1 - 74	1.5e-23	Ribosomal proteins L26 eukaryotic, L24P archaeal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49910 AT5G67510
fragaria_vesca	FvH4_1g17640 FvH4_5g24274 FvH4_6g36980
malus_domestica	MD02G1185200.v1.1 MD06G1158400.v1.1 MD12G1060600.v1.1 MD12G1243600.v1.1 MD14G1120400.v1.1 MD16G1170200.v1.1
prunus_persica	Prupe.3G002900_v2.0.a1 Prupe.6G221600_v2.0.a1
pyrus_communis	pycom02g15010 pycom06g14140 pycom14g13750
rosa_chinensis	RchiOBHm_Chr2g0107961 RchiOBHm_Chr2g0110121 RchiOBHm_Chr2g0149501
rosa_laevigata	RLG00000017629 RLG00000020414
rosa_multiflora	Rmu_sc0001484.1_g000030 Rmu_sc0005278.1_g000014 Rmu_sc0006867.1_g000007 Rmu_sc0008619.1_g000004
rosa_roxburghii	Rroxscaffold_2G00094390 Rroxscaffold_2G00098050 Rroxscaffold_2G00135780
rosa_rugosa	Rorug02G0149000 Rorug02G0412000 Rorug04G0124600
rosa_samantha	Rh2AG198300 Rh2AG472100 Rh2BG211100 Rh2BG484200 Rh2CG202900 Rh2CG219800 Rh2CG458000 Rh2DG205900 Rh2DG493400
rosa_wichuraiana	Rw2G015730 Rw2G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	62
AccB1I	GGYRCC	1 cut(s)	260
AccII	CGCG	1 cut(s)	237
AciI	CCGC	7 cut(s)	82, 85, 91, 220, 240, 243, 273
AclWI	GGATC	2 cut(s)	91, 161
AcoI	YGGCCR	1 cut(s)	225
AfaI	GTAC	2 cut(s)	38, 80
AfiI	CCNNNNNNNGG	2 cut(s)	91, 166
AhdI	GACNNNNNGTC	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	2 cut(s)	13, 184
AluI	AGCT	2 cut(s)	13, 184
AlwI	GGATC	2 cut(s)	91, 161
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	10
AspLEI	GCGC	4 cut(s)	10, 63, 111, 239
AspS9I	GGNCC	3 cut(s)	48, 199, 217
AsuHPI	GGTGA	6 cut(s)	106, 106, 139, 169, 184, 262
AsuII	TTCGAA	1 cut(s)	164
AvaII	GGWCC	3 cut(s)	48, 199, 217
BaeGI	GKGCMC	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	260
BbvI	GCAGC	1 cut(s)	22
BceAI	ACGGC	1 cut(s)	240
BciT130I	CCWGG	1 cut(s)	118
BclI	TGATCA	1 cut(s)	174
BisI	GCNGC	4 cut(s)	11, 85, 240, 243
BlsI	GCNGC	4 cut(s)	12, 86, 241, 244
Bme1390I	CCNGG	1 cut(s)	118
Bme18I	GGWCC	3 cut(s)	48, 199, 217
BmeRI	GACNNNNNGTC	1 cut(s)	205
BmgT120I	GGNCC	3 cut(s)	48, 199, 217
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	118
BmsI	GCATC	1 cut(s)	120
Bpu14I	TTCGAA	1 cut(s)	164
BsaBI	GATNNNNATC	1 cut(s)	101
BsaJI	CCNNGG	3 cut(s)	117, 228, 276
BsaWI	WCCGGW	2 cut(s)	45, 201
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 166
Bse118I	RCCGGY	1 cut(s)	55
Bse8I	GATNNNNATC	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	3 cut(s)	117, 228, 276
BseJI	GATNNNNATC	1 cut(s)	101
BseLI	CCNNNNNNNGG	2 cut(s)	91, 166
BseMII	CTCAG	1 cut(s)	199
BseRI	GAGGAG	1 cut(s)	7
BseSI	GKGCMC	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	237
BshFI	GGCC	1 cut(s)	227
BshNI	GGYRCC	1 cut(s)	260
BsiSI	CCGG	3 cut(s)	46, 56, 202
BslFI	GGGAC	1 cut(s)	246
BslI	CCNNNNNNNGG	2 cut(s)	91, 166
BsmFI	GGGAC	1 cut(s)	246
BsnI	GGCC	1 cut(s)	227
Bsp119I	TTCGAA	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp143I	GATC	3 cut(s)	96, 153, 174
BspACI	CCGC	7 cut(s)	82, 85, 91, 220, 240, 243, 273
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	1 cut(s)	198
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	262
BspPI	GGATC	2 cut(s)	91, 161
BspT104I	TTCGAA	1 cut(s)	164
BspT107I	GGYRCC	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	55
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	3 cut(s)	117, 228, 276
BssMI	GATC	3 cut(s)	96, 153, 174
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	2 cut(s)	41, 142
BstBI	TTCGAA	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	1 cut(s)	185
BstFNI	CGCG	1 cut(s)	237
BstHHI	GCGC	4 cut(s)	10, 63, 111, 239
BstKTI	GATC	3 cut(s)	99, 156, 177
BstMBI	GATC	3 cut(s)	96, 153, 174
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	116
BstSLI	GKGCMC	1 cut(s)	263
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	227
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	2 cut(s)	46, 209
Cac8I	GCNNGC	1 cut(s)	89
CfoI	GCGC	4 cut(s)	10, 63, 111, 239
Cfr10I	RCCGGY	1 cut(s)	55
Cfr13I	GGNCC	3 cut(s)	48, 199, 217
CseI	GACGC	1 cut(s)	243
Csp6I	GTAC	2 cut(s)	37, 79
CviAII	CATG	2 cut(s)	52, 286
CviJI	RGCY	3 cut(s)	13, 184, 227
CviKI_1	RGCY	3 cut(s)	13, 184, 227
CviQI	GTAC	2 cut(s)	37, 79
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	3 cut(s)	98, 155, 176
DpnII	GATC	3 cut(s)	96, 153, 174
DriI	GACNNNNNGTC	1 cut(s)	205
EaeI	YGGCCR	1 cut(s)	225
Eam1105I	GACNNNNNGTC	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	228
Eco32I	GATATC	1 cut(s)	283
Eco47I	GGWCC	3 cut(s)	48, 199, 217
EcoRII	CCWGG	1 cut(s)	116
EcoRV	GATATC	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	2 cut(s)	55, 289
FaiI	YATR	2 cut(s)	53, 287
FaqI	GGGAC	1 cut(s)	246
FatI	CATG	2 cut(s)	51, 285
FauI	CCCGC	1 cut(s)	84
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	4 cut(s)	11, 85, 240, 243
Fsp4HI	GCNGC	4 cut(s)	11, 85, 240, 243
FspI	TGCGCA	1 cut(s)	62
GlaI	GCGC	4 cut(s)	9, 62, 110, 238
GluI	GCNGC	4 cut(s)	11, 85, 240, 243
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	3 cut(s)	46, 56, 202
HgaI	GACGC	1 cut(s)	243
HhaI	GCGC	4 cut(s)	10, 63, 111, 239
Hin1II	CATG	2 cut(s)	55, 289
Hin6I	GCGC	4 cut(s)	8, 61, 109, 237
HinP1I	GCGC	4 cut(s)	8, 61, 109, 237
HincII	GTYRAC	2 cut(s)	138, 145
HindII	GTYRAC	2 cut(s)	138, 145
HpaII	CCGG	3 cut(s)	46, 56, 202
HphI	GGTGA	6 cut(s)	106, 106, 139, 169, 184, 262
Hpy166II	GTNNAC	5 cut(s)	79, 130, 138, 145, 270
Hpy188I	TCNGA	2 cut(s)	22, 188
Hpy188III	TCNNGA	1 cut(s)	151
Hpy8I	GTNNAC	5 cut(s)	79, 130, 138, 145, 270
Hpy99I	CGWCG	2 cut(s)	74, 152
HpyAV	CCTTC	4 cut(s)	35, 118, 160, 171
HpyCH4III	ACNGT	2 cut(s)	41, 142
HpyCH4IV	ACGT	1 cut(s)	147
HpyF3I	CTNAG	1 cut(s)	185
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	55, 289
HspAI	GCGC	4 cut(s)	8, 61, 109, 237
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	3 cut(s)	96, 153, 174
LpnPI	CCDG	6 cut(s)	59, 69, 103, 130, 200, 215
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	1 cut(s)	120
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	207
MalI	GATC	3 cut(s)	98, 155, 176
MboI	GATC	3 cut(s)	96, 153, 174
MhlI	GDGCHC	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	3 cut(s)	28, 67, 271
MslI	CAYNNNNRTG	1 cut(s)	56
MspI	CCGG	3 cut(s)	46, 56, 202
MspR9I	CCNGG	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	118
MvnI	CGCG	1 cut(s)	237
NdeII	GATC	3 cut(s)	96, 153, 174
NlaIII	CATG	2 cut(s)	55, 289
NlaIV	GGNNCC	1 cut(s)	262
NmuCI	GTSAC	1 cut(s)	207
NsbI	TGCGCA	1 cut(s)	62
NspV	TTCGAA	1 cut(s)	164
PkrI	GCNGC	4 cut(s)	12, 86, 241, 244
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	3 cut(s)	48, 199, 217
RsaI	GTAC	2 cut(s)	38, 80
RsaNI	GTAC	2 cut(s)	37, 79
RseI	CAYNNNNRTG	1 cut(s)	56
SatI	GCNGC	4 cut(s)	11, 85, 240, 243
Sau3AI	GATC	3 cut(s)	96, 153, 174
Sau96I	GGNCC	3 cut(s)	48, 199, 217
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	263
SetI	ASST	7 cut(s)	15, 27, 78, 129, 150, 171, 186
SfaNI	GCATC	1 cut(s)	120
SfuI	TTCGAA	1 cut(s)	164
SinI	GGWCC	3 cut(s)	48, 199, 217
SmiMI	CAYNNNNRTG	1 cut(s)	56
SsiI	CCGC	7 cut(s)	82, 85, 91, 220, 240, 243, 273
StyD4I	CCNGG	1 cut(s)	116
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	2 cut(s)	41, 142
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	2 cut(s)	105, 164
TatI	WGTACW	1 cut(s)	36
TauI	GCSGC	3 cut(s)	87, 242, 245
TscAI	CASTG	2 cut(s)	46, 216
TseFI	GTSAC	1 cut(s)	207
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	207
TspRI	CASTG	2 cut(s)	46, 216
VpaK11BI	GGWCC	3 cut(s)	48, 199, 217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.