Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001484.1

Orthogroup ID

OG0002325

Physical Location & Seq

Genomic Coordinates Forward (+)

126730 .. 127221

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001484.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgaagaggaacccacgcgtctcgagctccaggcgcaagagccgcaaggcccacttcacggcgccgtcgagcgtccgccgcgtcctgatgagcgcgccgctctcctcggacctcccgtcgagcgtccgccgcgtgctgatgagcgcgccgctctcctcggacctccggtcgaagtacaacgtccggtccatgccggtgcgcaaggacgacgaggtccaggtggtgcgtgggacctacaagggccgggagggcaaggtggtccaggtctaccgccgcaagtgggtcatccacatcgagcggatcacccgcgagaaggtcaacggatccacggtcaacgtcggaatcaacccgtccaaggtcctcatcaccaagctcaggttggacaaggaccgcaagtcgctgctggaccgcaaggccaagggaagagccgccgccgataaggacaaaggcaccaagttcacggcggaggacatcatgcagaacgtggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L26

Protein Analysis

163

Amino Acids

18.53

Weight (kDa)

11.23

Isoelectric Point (pI)

51.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49910 AT5G67510
fragaria_vesca	FvH4_1g17640 FvH4_5g24274 FvH4_6g36980
malus_domestica	MD02G1185200.v1.1 MD06G1158400.v1.1 MD12G1060600.v1.1 MD12G1243600.v1.1 MD14G1120400.v1.1 MD16G1170200.v1.1
prunus_persica	Prupe.3G002900_v2.0.a1 Prupe.6G221600_v2.0.a1
pyrus_communis	pycom02g15010 pycom06g14140 pycom14g13750
rosa_chinensis	RchiOBHm_Chr2g0107961 RchiOBHm_Chr2g0110121 RchiOBHm_Chr2g0149501
rosa_laevigata	RLG00000017629 RLG00000020414
rosa_multiflora	Rmu_sc0001484.1_g000030 Rmu_sc0005278.1_g000014 Rmu_sc0006867.1_g000007 Rmu_sc0008619.1_g000004
rosa_roxburghii	Rroxscaffold_2G00094390 Rroxscaffold_2G00098050 Rroxscaffold_2G00135780
rosa_rugosa	Rorug02G0149000 Rorug02G0412000 Rorug04G0124600
rosa_samantha	Rh2AG198300 Rh2AG472100 Rh2BG211100 Rh2BG484200 Rh2CG202900 Rh2CG219800 Rh2CG458000 Rh2DG205900 Rh2DG493400
rosa_wichuraiana	Rw2G015730 Rw2G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	212
Acc16I	TGCGCA	1 cut(s)	200
AccB1I	GGYRCC	2 cut(s)	61, 449
AccBSI	CCGCTC	3 cut(s)	100, 151, 298
AccI	GTMKAC	1 cut(s)	267
AccII	CGCG	6 cut(s)	18, 81, 95, 132, 146, 309
AclWI	GGATC	3 cut(s)	308, 318, 331
AcyI	GRCGYC	1 cut(s)	62
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	5 cut(s)	58, 280, 313, 355, 375
AflIII	ACRYGT	1 cut(s)	16
AhdI	GACNNNNNGTC	3 cut(s)	115, 166, 394
AjnI	CCWGG	3 cut(s)	29, 216, 261
AluBI	AGCT	2 cut(s)	27, 373
AluI	AGCT	2 cut(s)	27, 373
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	3 cut(s)	308, 318, 331
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	3 cut(s)	48, 241, 414
ApeKI	GCWGC	1 cut(s)	400
AspLEI	GCGC	7 cut(s)	36, 64, 95, 97, 146, 148, 201
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	2 cut(s)	295, 358
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	9 cut(s)	109, 160, 186, 214, 231, 259, 358, 388, 406
BamHI	GGATCC	1 cut(s)	323
BanI	GGYRCC	2 cut(s)	61, 449
BanII	GRGCYC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	387
BceAI	ACGGC	3 cut(s)	49, 75, 477
BciT130I	CCWGG	3 cut(s)	31, 218, 263
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	25
BfoI	RGCGCY	1 cut(s)	65
BglI	GCCNNNNNGGC	1 cut(s)	249
BisI	GCNGC	9 cut(s)	43, 79, 98, 130, 149, 274, 401, 429, 432
BlsI	GCNGC	9 cut(s)	44, 80, 99, 131, 150, 275, 402, 430, 433
Bme1390I	CCNGG	4 cut(s)	31, 218, 245, 263
Bme18I	GGWCC	9 cut(s)	109, 160, 186, 214, 231, 259, 358, 388, 406
BmeRI	GACNNNNNGTC	3 cut(s)	115, 166, 394
BmeT110I	CYCGRG	1 cut(s)	22
BmiI	GGNNCC	5 cut(s)	11, 63, 232, 325, 451
BmrFI	CCNGG	4 cut(s)	31, 218, 245, 263
BpmI	CTGGAG	1 cut(s)	13
Bpu10I	CCTNAGC	1 cut(s)	374
BpuMI	CCSGG	1 cut(s)	245
BsaHI	GRCGYC	1 cut(s)	62
BsaJI	CCNNGG	5 cut(s)	105, 156, 327, 354, 417
BsaWI	WCCGGW	2 cut(s)	165, 183
Bsc4I	CCNNNNNNNGG	5 cut(s)	58, 280, 313, 355, 375
Bse118I	RCCGGY	1 cut(s)	193
BseBI	CCWGG	3 cut(s)	31, 218, 263
BseDI	CCNNGG	5 cut(s)	105, 156, 327, 354, 417
BseGI	GGATG	1 cut(s)	285
BseLI	CCNNNNNNNGG	5 cut(s)	58, 280, 313, 355, 375
BseMII	CTCAG	1 cut(s)	388
BsePI	GCGCGC	2 cut(s)	93, 144
BseRI	GAGGAG	2 cut(s)	94, 145
BseXI	GCAGC	1 cut(s)	387
Bsh1236I	CGCG	6 cut(s)	18, 81, 95, 132, 146, 309
Bsh1285I	CGRYCG	1 cut(s)	170
BshFI	GGCC	3 cut(s)	50, 243, 416
BshNI	GGYRCC	2 cut(s)	61, 449
BsiEI	CGRYCG	1 cut(s)	170
BsiHKAI	GWGCWC	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	4 cut(s)	166, 184, 194, 244
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	5 cut(s)	58, 280, 313, 355, 375
BsmAI	GTCTC	1 cut(s)	25
BsmBI	CGTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	244
BsnI	GGCC	3 cut(s)	50, 243, 416
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	2 cut(s)	300, 323
BspANI	GGCC	3 cut(s)	50, 243, 416
BspCNI	CTCAG	1 cut(s)	387
BspFNI	CGCG	6 cut(s)	18, 81, 95, 132, 146, 309
BspLI	GGNNCC	5 cut(s)	11, 63, 232, 325, 451
BspPI	GGATC	3 cut(s)	308, 318, 331
BspQI	GCTCTTC	1 cut(s)	418
BspT107I	GGYRCC	2 cut(s)	61, 449
BsrBI	CCGCTC	3 cut(s)	100, 151, 298
BsrFI	RCCGGY	1 cut(s)	193
BssAI	RCCGGY	1 cut(s)	193
BssECI	CCNNGG	5 cut(s)	105, 156, 327, 354, 417
BssHII	GCGCGC	2 cut(s)	93, 144
BssMI	GATC	2 cut(s)	300, 323
BssNI	GRCGYC	1 cut(s)	62
BssT1I	CCWWGG	2 cut(s)	354, 417
Bst2UI	CCWGG	3 cut(s)	31, 218, 263
Bst4CI	ACNGT	1 cut(s)	331
Bst6I	CTCTTC	1 cut(s)	418
BstACI	GRCGYC	1 cut(s)	62
BstC8I	GCNNGC	3 cut(s)	95, 134, 146
BstDEI	CTNAG	1 cut(s)	374
BstDSI	CCRYGG	1 cut(s)	327
BstF5I	GGATG	1 cut(s)	285
BstFNI	CGCG	6 cut(s)	18, 81, 95, 132, 146, 309
BstH2I	RGCGCY	1 cut(s)	65
BstHHI	GCGC	7 cut(s)	36, 64, 95, 97, 146, 148, 201
BstKTI	GATC	2 cut(s)	303, 326
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	2 cut(s)	300, 323
BstMCI	CGRYCG	1 cut(s)	170
BstMWI	GCNNNNNNNGC	6 cut(s)	24, 33, 42, 78, 129, 249
BstNI	CCWGG	3 cut(s)	31, 218, 263
BstSCI	CCNGG	4 cut(s)	29, 216, 243, 261
BstUI	CGCG	6 cut(s)	18, 81, 95, 132, 146, 309
BstV1I	GCAGC	1 cut(s)	387
BstX2I	RGATCY	1 cut(s)	323
BstYI	RGATCY	1 cut(s)	323
BsuRI	GGCC	3 cut(s)	50, 243, 416
BtgI	CCRYGG	1 cut(s)	327
BtsCI	GGATG	1 cut(s)	285
Cac8I	GCNNGC	3 cut(s)	95, 134, 146
CfoI	GCGC	7 cut(s)	36, 64, 95, 97, 146, 148, 201
Cfr10I	RCCGGY	1 cut(s)	193
CseI	GACGC	4 cut(s)	7, 61, 70, 112
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	2 cut(s)	190, 475
CviJI	RGCY	7 cut(s)	27, 42, 50, 243, 373, 416, 428
CviKI_1	RGCY	7 cut(s)	27, 42, 50, 243, 373, 416, 428
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	374
DinI	GGCGCC	1 cut(s)	63
DpnI	GATC	2 cut(s)	302, 325
DpnII	GATC	2 cut(s)	300, 323
DrdI	GACNNNNNNGTC	1 cut(s)	212
DriI	GACNNNNNGTC	3 cut(s)	115, 166, 394
DseDI	GACNNNNNNGTC	1 cut(s)	212
Eam1104I	CTCTTC	1 cut(s)	418
Eam1105I	GACNNNNNGTC	3 cut(s)	115, 166, 394
EarI	CTCTTC	1 cut(s)	418
EciI	GGCGGA	3 cut(s)	65, 116, 479
Ecl136II	GAGCTC	1 cut(s)	27
Eco130I	CCWWGG	2 cut(s)	354, 417
Eco24I	GRGCYC	1 cut(s)	29
Eco47I	GGWCC	9 cut(s)	109, 160, 186, 214, 231, 259, 358, 388, 406
Eco53kI	GAGCTC	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	27
EcoO109I	RGGNCCY	2 cut(s)	231, 358
EcoRII	CCWGG	3 cut(s)	29, 216, 261
EcoT14I	CCWWGG	2 cut(s)	354, 417
EcoT38I	GRGCYC	1 cut(s)	29
EgeI	GGCGCC	1 cut(s)	63
EheI	GGCGCC	1 cut(s)	63
ErhI	CCWWGG	2 cut(s)	354, 417
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	2 cut(s)	193, 478
FaiI	YATR	2 cut(s)	191, 476
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	2 cut(s)	189, 474
FauI	CCCGC	1 cut(s)	314
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	9 cut(s)	43, 79, 98, 130, 149, 274, 401, 429, 432
FokI	GGATG	1 cut(s)	272
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	9 cut(s)	43, 79, 98, 130, 149, 274, 401, 429, 432
FspI	TGCGCA	1 cut(s)	200
GlaI	GCGC	7 cut(s)	35, 63, 94, 96, 145, 147, 200
GluI	GCNGC	9 cut(s)	43, 79, 98, 130, 149, 274, 401, 429, 432
GsuI	CTGGAG	1 cut(s)	13
HaeII	RGCGCY	1 cut(s)	65
HaeIII	GGCC	3 cut(s)	50, 243, 416
HapII	CCGG	4 cut(s)	166, 184, 194, 244
HgaI	GACGC	4 cut(s)	7, 61, 70, 112
HhaI	GCGC	7 cut(s)	36, 64, 95, 97, 146, 148, 201
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	2 cut(s)	193, 478
Hin6I	GCGC	7 cut(s)	34, 62, 93, 95, 144, 146, 199
HinP1I	GCGC	7 cut(s)	34, 62, 93, 95, 144, 146, 199
HincII	GTYRAC	2 cut(s)	319, 334
HindII	GTYRAC	2 cut(s)	319, 334
HinfI	GANTC	1 cut(s)	342
HpaII	CCGG	4 cut(s)	166, 184, 194, 244
HphI	GGTGA	2 cut(s)	295, 358
Hpy166II	GTNNAC	4 cut(s)	268, 319, 334, 459
Hpy188I	TCNGA	3 cut(s)	109, 160, 341
Hpy188III	TCNNGA	2 cut(s)	22, 85
Hpy8I	GTNNAC	4 cut(s)	268, 319, 334, 459
Hpy99I	CGWCG	4 cut(s)	70, 121, 212, 341
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4IV	ACGT	3 cut(s)	180, 336, 483
HpyCH4V	TGCA	1 cut(s)	478
HpyF10VI	GCNNNNNNNGC	6 cut(s)	24, 33, 42, 78, 129, 249
HpyF3I	CTNAG	1 cut(s)	374
HpySE526I	ACGT	3 cut(s)	180, 336, 483
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	2 cut(s)	193, 478
HspAI	GCGC	7 cut(s)	34, 62, 93, 95, 144, 146, 199
KasI	GGCGCC	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	300, 323
LguI	GCTCTTC	1 cut(s)	418
LmnI	GCTCC	1 cut(s)	32
Lsp1109I	GCAGC	1 cut(s)	387
MaeII	ACGT	3 cut(s)	180, 336, 483
MalI	GATC	2 cut(s)	302, 325
MbiI	CCGCTC	3 cut(s)	100, 151, 298
MboI	GATC	2 cut(s)	300, 323
MboII	GAAGA	2 cut(s)	16, 435
MflI	RGATCY	1 cut(s)	323
MhlI	GDGCHC	1 cut(s)	29
MluI	ACGCGT	1 cut(s)	16
Mly113I	GGCGCC	1 cut(s)	62
MmeI	TCCRAC	2 cut(s)	319, 360
MnlI	CCTC	8 cut(s)	115, 122, 166, 173, 205, 241, 371, 460
MslI	CAYNNNNRTG	1 cut(s)	194
MspI	CCGG	4 cut(s)	166, 184, 194, 244
MspR9I	CCNGG	4 cut(s)	31, 218, 245, 263
MvaI	CCWGG	3 cut(s)	31, 218, 263
MvnI	CGCG	6 cut(s)	18, 81, 95, 132, 146, 309
MwoI	GCNNNNNNNGC	6 cut(s)	24, 33, 42, 78, 129, 249
NarI	GGCGCC	1 cut(s)	62
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	2 cut(s)	300, 323
NlaIII	CATG	2 cut(s)	193, 478
NlaIV	GGNNCC	5 cut(s)	11, 63, 232, 325, 451
NsbI	TGCGCA	1 cut(s)	200
PaeR7I	CTCGAG	1 cut(s)	22
PauI	GCGCGC	2 cut(s)	93, 144
PciSI	GCTCTTC	1 cut(s)	418
PcsI	WCGNNNNNNNCGW	2 cut(s)	65, 113
PfeI	GAWTC	1 cut(s)	342
PflFI	GACNNNGTC	1 cut(s)	212
PkrI	GCNGC	9 cut(s)	44, 80, 99, 131, 150, 275, 402, 430, 433
PluTI	GGCGCC	1 cut(s)	65
PpuMI	RGGWCCY	2 cut(s)	231, 358
Psp124BI	GAGCTC	1 cut(s)	29
Psp5II	RGGWCCY	2 cut(s)	231, 358
Psp6I	CCWGG	3 cut(s)	29, 216, 261
PspGI	CCWGG	3 cut(s)	29, 216, 261
PspN4I	GGNNCC	5 cut(s)	11, 63, 232, 325, 451
PspPPI	RGGWCCY	2 cut(s)	231, 358
PsuI	RGATCY	1 cut(s)	323
PsyI	GACNNNGTC	1 cut(s)	212
PteI	GCGCGC	2 cut(s)	93, 144
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
RseI	CAYNNNNRTG	1 cut(s)	194
SacI	GAGCTC	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	418
SatI	GCNGC	9 cut(s)	43, 79, 98, 130, 149, 274, 401, 429, 432
Sau3AI	GATC	2 cut(s)	300, 323
ScrFI	CCNGG	4 cut(s)	31, 218, 245, 263
SduI	GDGCHC	1 cut(s)	29
SfoI	GGCGCC	1 cut(s)	63
Sfr274I	CTCGAG	1 cut(s)	22
SinI	GGWCC	9 cut(s)	109, 160, 186, 214, 231, 259, 358, 388, 406
SlaI	CTCGAG	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
SspDI	GGCGCC	1 cut(s)	61
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	4 cut(s)	29, 216, 243, 261
StyI	CCWWGG	2 cut(s)	354, 417
TaaI	ACNGT	1 cut(s)	331
TaiI	ACGT	3 cut(s)	183, 339, 486
TaqI	TCGA	5 cut(s)	23, 68, 119, 170, 294
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	8 cut(s)	45, 81, 100, 132, 151, 276, 431, 434
TfiI	GAWTC	1 cut(s)	342
TseI	GCWGC	1 cut(s)	400
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	336
Tth111I	GACNNNGTC	1 cut(s)	212
VpaK11BI	GGWCC	9 cut(s)	109, 160, 186, 214, 231, 259, 358, 388, 406
XcmI	CCANNNNNNNNNTGG	2 cut(s)	224, 376
XhoI	CTCGAG	1 cut(s)	22
XmiI	GTMKAC	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.