Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002325

Physical Location & Seq

Genomic Coordinates Reverse (-)

31428027 .. 31428329

Gene Structure 303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1243600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCCGGTGCGCAAGGACGACGAGGTCCAGGTCGTGCGTGGGACCTATAAGGGCCGCGAGGGCAAGGTTGTCCAGGTGTATCGCCGGAAGTTGGTCATCCACATCGAGCGGATCACCCGAGAGAAGGTGAACGGGTCCACCGTCAATGTCGGCATCAACCCCTCCAAGGTCGTCATCACCAAGCTCCGCCTCGACAAGGACCGCAAGTCTCTGCTGGACCGCAAGGCCAAGGGCCGCGCCGTCGCTGACAAGGACAAAGGCACCAAGTTCACCGCAGAGGATATCATGCAAAACGTCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L26

Protein Analysis

101

Amino Acids

11.4

Weight (kDa)

10.2

Isoelectric Point (pI)

12.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KOW4_SPT5	PF23291	3 - 39	5.4e-06	Transcription elongation factor SPT5, fourth KOW domain
KOW	PF00467	5 - 36	2.5e-08	KOW motif
Ribosomal_L26	PF16906	24 - 75	3.2e-15	Ribosomal proteins L26 eukaryotic, L24P archaeal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49910 AT5G67510
fragaria_vesca	FvH4_1g17640 FvH4_5g24274 FvH4_6g36980
malus_domestica	MD02G1185200.v1.1 MD06G1158400.v1.1 MD12G1060600.v1.1 MD12G1243600.v1.1 MD14G1120400.v1.1 MD16G1170200.v1.1
prunus_persica	Prupe.3G002900_v2.0.a1 Prupe.6G221600_v2.0.a1
pyrus_communis	pycom02g15010 pycom06g14140 pycom14g13750
rosa_chinensis	RchiOBHm_Chr2g0107961 RchiOBHm_Chr2g0110121 RchiOBHm_Chr2g0149501
rosa_laevigata	RLG00000017629 RLG00000020414
rosa_multiflora	Rmu_sc0001484.1_g000030 Rmu_sc0005278.1_g000014 Rmu_sc0006867.1_g000007 Rmu_sc0008619.1_g000004
rosa_roxburghii	Rroxscaffold_2G00094390 Rroxscaffold_2G00098050 Rroxscaffold_2G00135780
rosa_rugosa	Rorug02G0149000 Rorug02G0412000 Rorug04G0124600
rosa_samantha	Rh2AG198300 Rh2AG472100 Rh2BG211100 Rh2BG484200 Rh2CG202900 Rh2CG219800 Rh2CG458000 Rh2DG205900 Rh2DG493400
rosa_wichuraiana	Rw2G015730 Rw2G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	23
Acc16I	TGCGCA	1 cut(s)	11
AccB1I	GGYRCC	1 cut(s)	260
AccBSI	CCGCTC	1 cut(s)	109
AccII	CGCG	2 cut(s)	57, 237
AciI	CCGC	7 cut(s)	55, 109, 187, 202, 220, 235, 273
AclWI	GGATC	1 cut(s)	119
AfiI	CCNNNNNNNGG	4 cut(s)	91, 124, 166, 196
AhdI	GACNNNNNGTC	1 cut(s)	205
AjnI	CCWGG	2 cut(s)	27, 72
AluBI	AGCT	1 cut(s)	184
AluI	AGCT	1 cut(s)	184
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	119
Ama87I	CYCGRG	1 cut(s)	117
AoxI	GGCC	3 cut(s)	52, 225, 232
AspLEI	GCGC	2 cut(s)	12, 239
AspS9I	GGNCC	7 cut(s)	25, 42, 52, 135, 199, 217, 232
AsuHPI	GGTGA	4 cut(s)	106, 139, 169, 262
AvaI	CYCGRG	1 cut(s)	117
AvaII	GGWCC	5 cut(s)	25, 42, 135, 199, 217
BanI	GGYRCC	1 cut(s)	260
BceAI	ACGGC	1 cut(s)	224
BciT130I	CCWGG	2 cut(s)	29, 74
BcoDI	GTCTC	1 cut(s)	213
BglI	GCCNNNNNGGC	1 cut(s)	60
BisI	GCNGC	2 cut(s)	55, 235
BlsI	GCNGC	2 cut(s)	56, 236
Bme1390I	CCNGG	2 cut(s)	29, 74
Bme18I	GGWCC	5 cut(s)	25, 42, 135, 199, 217
BmeRI	GACNNNNNGTC	1 cut(s)	205
BmeT110I	CYCGRG	1 cut(s)	117
BmgT120I	GGNCC	7 cut(s)	25, 42, 52, 135, 199, 217, 232
BmiI	GGNNCC	3 cut(s)	43, 136, 262
BmrFI	CCNGG	2 cut(s)	29, 74
BmsI	GCATC	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	165, 228
Bsc4I	CCNNNNNNNGG	4 cut(s)	91, 124, 166, 196
Bse118I	RCCGGY	1 cut(s)	4
BseBI	CCWGG	2 cut(s)	29, 74
BseDI	CCNNGG	2 cut(s)	165, 228
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	4 cut(s)	91, 124, 166, 196
Bsh1236I	CGCG	2 cut(s)	57, 237
BshFI	GGCC	3 cut(s)	54, 227, 234
BshNI	GGYRCC	1 cut(s)	260
BsiHKCI	CYCGRG	1 cut(s)	117
BsiSI	CCGG	2 cut(s)	5, 85
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	4 cut(s)	91, 124, 166, 196
BsmAI	GTCTC	1 cut(s)	213
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	3 cut(s)	54, 227, 234
BsoBI	CYCGRG	1 cut(s)	117
Bsp143I	GATC	1 cut(s)	111
BspACI	CCGC	7 cut(s)	55, 109, 187, 202, 220, 235, 273
BspANI	GGCC	3 cut(s)	54, 227, 234
BspFNI	CGCG	2 cut(s)	57, 237
BspLI	GGNNCC	3 cut(s)	43, 136, 262
BspPI	GGATC	1 cut(s)	119
BspT107I	GGYRCC	1 cut(s)	260
BsrBI	CCGCTC	1 cut(s)	109
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	2 cut(s)	165, 228
BssMI	GATC	1 cut(s)	111
BssT1I	CCWWGG	2 cut(s)	165, 228
Bst2UI	CCWGG	2 cut(s)	29, 74
Bst4CI	ACNGT	1 cut(s)	142
BstENI	CCTNNNNNAGG	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	96
BstFNI	CGCG	2 cut(s)	57, 237
BstHHI	GCGC	2 cut(s)	12, 239
BstKTI	GATC	1 cut(s)	114
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	1 cut(s)	60
BstNI	CCWGG	2 cut(s)	29, 74
BstSCI	CCNGG	2 cut(s)	27, 72
BstUI	CGCG	2 cut(s)	57, 237
BsuRI	GGCC	3 cut(s)	54, 227, 234
BtsCI	GGATG	1 cut(s)	96
CfoI	GCGC	2 cut(s)	12, 239
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	7 cut(s)	25, 42, 52, 135, 199, 217, 232
CviAII	CATG	1 cut(s)	286
CviJI	RGCY	4 cut(s)	54, 184, 227, 234
CviKI_1	RGCY	4 cut(s)	54, 184, 227, 234
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
DrdI	GACNNNNNNGTC	1 cut(s)	23
DriI	GACNNNNNGTC	1 cut(s)	205
DseDI	GACNNNNNNGTC	1 cut(s)	23
Eam1105I	GACNNNNNGTC	1 cut(s)	205
EciI	GGCGGA	1 cut(s)	176
Eco130I	CCWWGG	2 cut(s)	165, 228
Eco32I	GATATC	1 cut(s)	283
Eco47I	GGWCC	5 cut(s)	25, 42, 135, 199, 217
Eco88I	CYCGRG	1 cut(s)	117
EcoNI	CCTNNNNNAGG	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	42
EcoRII	CCWGG	2 cut(s)	27, 72
EcoRV	GATATC	1 cut(s)	283
EcoT14I	CCWWGG	2 cut(s)	165, 228
ErhI	CCWWGG	2 cut(s)	165, 228
FaeI	CATG	1 cut(s)	289
FaiI	YATR	2 cut(s)	48, 287
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	1 cut(s)	285
Fnu4HI	GCNGC	2 cut(s)	55, 235
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	2 cut(s)	55, 235
FspI	TGCGCA	1 cut(s)	11
GlaI	GCGC	2 cut(s)	11, 238
GluI	GCNGC	2 cut(s)	55, 235
HaeIII	GGCC	3 cut(s)	54, 227, 234
HapII	CCGG	2 cut(s)	5, 85
HhaI	GCGC	2 cut(s)	12, 239
Hin1II	CATG	1 cut(s)	289
Hin6I	GCGC	2 cut(s)	10, 237
HinP1I	GCGC	2 cut(s)	10, 237
HpaII	CCGG	2 cut(s)	5, 85
HphI	GGTGA	4 cut(s)	106, 139, 169, 262
Hpy166II	GTNNAC	3 cut(s)	130, 138, 270
Hpy8I	GTNNAC	3 cut(s)	130, 138, 270
Hpy99I	CGWCG	3 cut(s)	23, 245, 299
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	1 cut(s)	289
HpyF10VI	GCNNNNNNNGC	1 cut(s)	60
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	1 cut(s)	289
HspAI	GCGC	2 cut(s)	10, 237
Kzo9I	GATC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	7 cut(s)	14, 18, 41, 59, 86, 98, 200
LweI	GCATC	1 cut(s)	162
MaeII	ACGT	1 cut(s)	294
MalI	GATC	1 cut(s)	113
MbiI	CCGCTC	1 cut(s)	109
MboI	GATC	1 cut(s)	111
MnlI	CCTC	5 cut(s)	16, 52, 172, 200, 271
MspI	CCGG	2 cut(s)	5, 85
MspR9I	CCNGG	2 cut(s)	29, 74
MvaI	CCWGG	2 cut(s)	29, 74
MvnI	CGCG	2 cut(s)	57, 237
MwoI	GCNNNNNNNGC	1 cut(s)	60
NdeII	GATC	1 cut(s)	111
NlaIII	CATG	1 cut(s)	289
NlaIV	GGNNCC	3 cut(s)	43, 136, 262
NsbI	TGCGCA	1 cut(s)	11
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PflFI	GACNNNGTC	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	56, 236
PpuMI	RGGWCCY	1 cut(s)	42
Psp5II	RGGWCCY	1 cut(s)	42
Psp6I	CCWGG	2 cut(s)	27, 72
PspGI	CCWGG	2 cut(s)	27, 72
PspN4I	GGNNCC	3 cut(s)	43, 136, 262
PspPI	GGNCC	7 cut(s)	25, 42, 52, 135, 199, 217, 232
PspPPI	RGGWCCY	1 cut(s)	42
PsyI	GACNNNGTC	1 cut(s)	23
SatI	GCNGC	2 cut(s)	55, 235
Sau3AI	GATC	1 cut(s)	111
Sau96I	GGNCC	7 cut(s)	25, 42, 52, 135, 199, 217, 232
ScrFI	CCNGG	2 cut(s)	29, 74
SetI	ASST	9 cut(s)	27, 33, 47, 69, 78, 129, 171, 186, 297
SfaNI	GCATC	1 cut(s)	162
SinI	GGWCC	5 cut(s)	25, 42, 135, 199, 217
SsiI	CCGC	7 cut(s)	55, 109, 187, 202, 220, 235, 273
StyD4I	CCNGG	2 cut(s)	27, 72
StyI	CCWWGG	2 cut(s)	165, 228
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	3 cut(s)	105, 192, 297
TauI	GCSGC	2 cut(s)	57, 237
Tth111I	GACNNNGTC	1 cut(s)	23
VpaK11BI	GGWCC	5 cut(s)	25, 42, 135, 199, 217
XagI	CCTNNNNNAGG	1 cut(s)	194
XcmI	CCANNNNNNNNNTGG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.