Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002325

Physical Location & Seq

Genomic Coordinates Reverse (-)

10267969 .. 10268662

Gene Structure 694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g17640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAAGAGGAACCCACGCGTGTCGAGCTCCCGGCGCAAGAGCCGCAAGGCTCACTTCACGGCGCCGTCGAGCGTCCGCCGCGTCCTGATGAGCGCGCCGCTCTCCACCGACCTCCGGTCCAAGTACAACGTCCGGTCCATGCCGGTGCGCAAGGACGACGAGGTCCAGGTGGTGCGTGGGACCTACAAGGGCCGCGAGGGCAAGGTCGTCCAGGTCTACCGCCGCAAGTGGGTCATCCACATCGAGCGCATCACCCGCGAGAAGGTCAACGGCTCCACGGTCAACGTCGGCATCAACCCCTCCAAGGTCCTCATCACCAAGCTCAGGCTCGACAAGGATCGCAAGGCGCTGCTCGACCGCAAGGCCAAGGGAAGAGCCGCCGCCGATAAGGACAAGGGCACCAAGTTCACGGCGGAGGACATTATGCAGAATGTCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L26

Protein Analysis

147

Amino Acids

16.73

Weight (kDa)

11.14

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L26	PF16906	8 - 121	1.2e-37	Ribosomal proteins L26 eukaryotic, L24P archaeal
KOW	PF00467	51 - 82	1.6e-08	KOW motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49910 AT5G67510
fragaria_vesca	FvH4_1g17640 FvH4_5g24274 FvH4_6g36980
malus_domestica	MD02G1185200.v1.1 MD06G1158400.v1.1 MD12G1060600.v1.1 MD12G1243600.v1.1 MD14G1120400.v1.1 MD16G1170200.v1.1
prunus_persica	Prupe.3G002900_v2.0.a1 Prupe.6G221600_v2.0.a1
pyrus_communis	pycom02g15010 pycom06g14140 pycom14g13750
rosa_chinensis	RchiOBHm_Chr2g0107961 RchiOBHm_Chr2g0110121 RchiOBHm_Chr2g0149501
rosa_laevigata	RLG00000017629 RLG00000020414
rosa_multiflora	Rmu_sc0001484.1_g000030 Rmu_sc0005278.1_g000014 Rmu_sc0006867.1_g000007 Rmu_sc0008619.1_g000004
rosa_roxburghii	Rroxscaffold_2G00094390 Rroxscaffold_2G00098050 Rroxscaffold_2G00135780
rosa_rugosa	Rorug02G0149000 Rorug02G0412000 Rorug04G0124600
rosa_samantha	Rh2AG198300 Rh2AG472100 Rh2BG211100 Rh2BG484200 Rh2CG202900 Rh2CG219800 Rh2CG458000 Rh2DG205900 Rh2DG493400
rosa_wichuraiana	Rw2G015730 Rw2G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
Acc16I	TGCGCA	1 cut(s)	149
AccB1I	GGYRCC	2 cut(s)	61, 398
AccBSI	CCGCTC	1 cut(s)	100
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	5 cut(s)	18, 81, 95, 195, 258
AclWI	GGATC	1 cut(s)	345
AcyI	GRCGYC	1 cut(s)	62
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	5 cut(s)	114, 229, 262, 304, 324
AflIII	ACRYGT	1 cut(s)	16
AhdI	GACNNNNNGTC	1 cut(s)	115
AjnI	CCWGG	2 cut(s)	165, 210
AluBI	AGCT	2 cut(s)	27, 322
AluI	AGCT	2 cut(s)	27, 322
Alw21I	GWGCWC	1 cut(s)	29
AlwI	GGATC	1 cut(s)	345
AoxI	GGCC	2 cut(s)	190, 363
ApeKI	GCWGC	1 cut(s)	349
AspLEI	GCGC	7 cut(s)	36, 64, 95, 97, 150, 249, 349
AspS9I	GGNCC	6 cut(s)	117, 135, 163, 180, 190, 307
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	2 cut(s)	244, 307
AvaII	GGWCC	5 cut(s)	117, 135, 163, 180, 307
BaeGI	GKGCMC	1 cut(s)	401
BanI	GGYRCC	2 cut(s)	61, 398
BanII	GRGCYC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	336
BceAI	ACGGC	4 cut(s)	49, 75, 286, 426
BciT130I	CCWGG	2 cut(s)	167, 212
BcnI	CCSGG	1 cut(s)	31
BfoI	RGCGCY	2 cut(s)	65, 350
BglI	GCCNNNNNGGC	1 cut(s)	198
BisI	GCNGC	8 cut(s)	43, 79, 98, 193, 223, 350, 378, 381
BlsI	GCNGC	8 cut(s)	44, 80, 99, 194, 224, 351, 379, 382
Bme1390I	CCNGG	3 cut(s)	31, 167, 212
Bme18I	GGWCC	5 cut(s)	117, 135, 163, 180, 307
BmeRI	GACNNNNNGTC	1 cut(s)	115
BmgT120I	GGNCC	6 cut(s)	117, 135, 163, 180, 190, 307
BmiI	GGNNCC	5 cut(s)	11, 63, 181, 274, 400
BmrFI	CCNGG	3 cut(s)	31, 167, 212
BmsI	GCATC	2 cut(s)	258, 300
Bpu10I	CCTNAGC	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	31
BsaHI	GRCGYC	1 cut(s)	62
BsaJI	CCNNGG	3 cut(s)	276, 303, 366
BsaWI	WCCGGW	2 cut(s)	114, 132
Bsc4I	CCNNNNNNNGG	5 cut(s)	114, 229, 262, 304, 324
Bse118I	RCCGGY	1 cut(s)	142
BseBI	CCWGG	2 cut(s)	167, 212
BseDI	CCNNGG	3 cut(s)	276, 303, 366
BseGI	GGATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	5 cut(s)	114, 229, 262, 304, 324
BseMII	CTCAG	1 cut(s)	337
BsePI	GCGCGC	1 cut(s)	93
BseSI	GKGCMC	1 cut(s)	401
BseXI	GCAGC	1 cut(s)	336
Bsh1236I	CGCG	5 cut(s)	18, 81, 95, 195, 258
Bsh1285I	CGRYCG	1 cut(s)	358
BshFI	GGCC	2 cut(s)	192, 365
BshNI	GGYRCC	2 cut(s)	61, 398
BsiEI	CGRYCG	1 cut(s)	358
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	4 cut(s)	31, 115, 133, 143
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	5 cut(s)	114, 229, 262, 304, 324
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	2 cut(s)	192, 365
Bsp1286I	GDGCHC	2 cut(s)	29, 401
Bsp143I	GATC	1 cut(s)	337
BspANI	GGCC	2 cut(s)	192, 365
BspCNI	CTCAG	1 cut(s)	336
BspFNI	CGCG	5 cut(s)	18, 81, 95, 195, 258
BspLI	GGNNCC	5 cut(s)	11, 63, 181, 274, 400
BspPI	GGATC	1 cut(s)	345
BspQI	GCTCTTC	1 cut(s)	367
BspT107I	GGYRCC	2 cut(s)	61, 398
BsrBI	CCGCTC	1 cut(s)	100
BsrFI	RCCGGY	1 cut(s)	142
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	3 cut(s)	276, 303, 366
BssHII	GCGCGC	1 cut(s)	93
BssMI	GATC	1 cut(s)	337
BssNI	GRCGYC	1 cut(s)	62
BssT1I	CCWWGG	2 cut(s)	303, 366
Bst2UI	CCWGG	2 cut(s)	167, 212
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	367
BstACI	GRCGYC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	323
BstDSI	CCRYGG	1 cut(s)	276
BstF5I	GGATG	1 cut(s)	234
BstFNI	CGCG	5 cut(s)	18, 81, 95, 195, 258
BstH2I	RGCGCY	2 cut(s)	65, 350
BstHHI	GCGC	7 cut(s)	36, 64, 95, 97, 150, 249, 349
BstKTI	GATC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	337
BstMCI	CGRYCG	1 cut(s)	358
BstMWI	GCNNNNNNNGC	6 cut(s)	24, 33, 42, 78, 198, 255
BstNI	CCWGG	2 cut(s)	167, 212
BstSCI	CCNGG	3 cut(s)	29, 165, 210
BstSLI	GKGCMC	1 cut(s)	401
BstUI	CGCG	5 cut(s)	18, 81, 95, 195, 258
BstV1I	GCAGC	1 cut(s)	336
BsuRI	GGCC	2 cut(s)	192, 365
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	95
CfoI	GCGC	7 cut(s)	36, 64, 95, 97, 150, 249, 349
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	6 cut(s)	117, 135, 163, 180, 190, 307
CseI	GACGC	2 cut(s)	61, 70
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	9 cut(s)	27, 42, 50, 192, 273, 322, 328, 365, 377
CviKI_1	RGCY	9 cut(s)	27, 42, 50, 192, 273, 322, 328, 365, 377
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	1 cut(s)	323
DinI	GGCGCC	1 cut(s)	63
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
DrdI	GACNNNNNNGTC	1 cut(s)	161
DriI	GACNNNNNGTC	1 cut(s)	115
DseDI	GACNNNNNNGTC	1 cut(s)	161
Eam1104I	CTCTTC	1 cut(s)	367
Eam1105I	GACNNNNNGTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	367
EciI	GGCGGA	2 cut(s)	65, 428
Ecl136II	GAGCTC	1 cut(s)	27
Eco130I	CCWWGG	2 cut(s)	303, 366
Eco24I	GRGCYC	1 cut(s)	29
Eco47I	GGWCC	5 cut(s)	117, 135, 163, 180, 307
Eco53kI	GAGCTC	1 cut(s)	27
EcoICRI	GAGCTC	1 cut(s)	27
EcoO109I	RGGNCCY	2 cut(s)	180, 307
EcoRII	CCWGG	2 cut(s)	165, 210
EcoT14I	CCWWGG	2 cut(s)	303, 366
EcoT38I	GRGCYC	1 cut(s)	29
EgeI	GGCGCC	1 cut(s)	63
EheI	GGCGCC	1 cut(s)	63
ErhI	CCWWGG	2 cut(s)	303, 366
FaeI	CATG	1 cut(s)	142
FaiI	YATR	2 cut(s)	140, 425
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	1 cut(s)	138
FauI	CCCGC	1 cut(s)	263
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	8 cut(s)	43, 79, 98, 193, 223, 350, 378, 381
FokI	GGATG	1 cut(s)	221
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	8 cut(s)	43, 79, 98, 193, 223, 350, 378, 381
FspI	TGCGCA	1 cut(s)	149
GlaI	GCGC	7 cut(s)	35, 63, 94, 96, 149, 248, 348
GluI	GCNGC	8 cut(s)	43, 79, 98, 193, 223, 350, 378, 381
HaeII	RGCGCY	2 cut(s)	65, 350
HaeIII	GGCC	2 cut(s)	192, 365
HapII	CCGG	4 cut(s)	31, 115, 133, 143
HgaI	GACGC	2 cut(s)	61, 70
HhaI	GCGC	7 cut(s)	36, 64, 95, 97, 150, 249, 349
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	1 cut(s)	142
Hin6I	GCGC	7 cut(s)	34, 62, 93, 95, 148, 247, 347
HinP1I	GCGC	7 cut(s)	34, 62, 93, 95, 148, 247, 347
HincII	GTYRAC	2 cut(s)	268, 283
HindII	GTYRAC	2 cut(s)	268, 283
HpaII	CCGG	4 cut(s)	31, 115, 133, 143
HphI	GGTGA	2 cut(s)	244, 307
Hpy166II	GTNNAC	4 cut(s)	217, 268, 283, 408
Hpy188III	TCNNGA	1 cut(s)	85
Hpy8I	GTNNAC	4 cut(s)	217, 268, 283, 408
Hpy99I	CGWCG	3 cut(s)	70, 161, 290
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	2 cut(s)	129, 285
HpyCH4V	TGCA	1 cut(s)	427
HpyF10VI	GCNNNNNNNGC	6 cut(s)	24, 33, 42, 78, 198, 255
HpyF3I	CTNAG	1 cut(s)	323
HpySE526I	ACGT	2 cut(s)	129, 285
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	1 cut(s)	142
HspAI	GCGC	7 cut(s)	34, 62, 93, 95, 148, 247, 347
KasI	GGCGCC	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	337
LguI	GCTCTTC	1 cut(s)	367
LmnI	GCTCC	2 cut(s)	32, 278
Lsp1109I	GCAGC	1 cut(s)	336
LweI	GCATC	2 cut(s)	258, 300
MaeII	ACGT	2 cut(s)	129, 285
MalI	GATC	1 cut(s)	339
MbiI	CCGCTC	1 cut(s)	100
MboI	GATC	1 cut(s)	337
MboII	GAAGA	2 cut(s)	16, 384
MhlI	GDGCHC	2 cut(s)	29, 401
MluI	ACGCGT	1 cut(s)	16
Mly113I	GGCGCC	1 cut(s)	62
MnlI	CCTC	6 cut(s)	122, 154, 190, 310, 320, 409
MslI	CAYNNNNRTG	1 cut(s)	143
MspI	CCGG	4 cut(s)	31, 115, 133, 143
MspR9I	CCNGG	3 cut(s)	31, 167, 212
MvaI	CCWGG	2 cut(s)	167, 212
MvnI	CGCG	5 cut(s)	18, 81, 95, 195, 258
MwoI	GCNNNNNNNGC	6 cut(s)	24, 33, 42, 78, 198, 255
NarI	GGCGCC	1 cut(s)	62
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	5 cut(s)	11, 63, 181, 274, 400
NsbI	TGCGCA	1 cut(s)	149
PauI	GCGCGC	1 cut(s)	93
PciSI	GCTCTTC	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	1 cut(s)	65
PflFI	GACNNNGTC	1 cut(s)	161
PkrI	GCNGC	8 cut(s)	44, 80, 99, 194, 224, 351, 379, 382
PluTI	GGCGCC	1 cut(s)	65
PpuMI	RGGWCCY	2 cut(s)	180, 307
Psp124BI	GAGCTC	1 cut(s)	29
Psp5II	RGGWCCY	2 cut(s)	180, 307
Psp6I	CCWGG	2 cut(s)	165, 210
PspGI	CCWGG	2 cut(s)	165, 210
PspN4I	GGNNCC	5 cut(s)	11, 63, 181, 274, 400
PspPI	GGNCC	6 cut(s)	117, 135, 163, 180, 190, 307
PspPPI	RGGWCCY	2 cut(s)	180, 307
PsyI	GACNNNGTC	1 cut(s)	161
PteI	GCGCGC	1 cut(s)	93
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	143
SacI	GAGCTC	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	367
SatI	GCNGC	8 cut(s)	43, 79, 98, 193, 223, 350, 378, 381
Sau3AI	GATC	1 cut(s)	337
Sau96I	GGNCC	6 cut(s)	117, 135, 163, 180, 190, 307
ScrFI	CCNGG	3 cut(s)	31, 167, 212
SduI	GDGCHC	2 cut(s)	29, 401
SfaNI	GCATC	2 cut(s)	258, 300
SfoI	GGCGCC	1 cut(s)	63
SinI	GGWCC	5 cut(s)	117, 135, 163, 180, 307
SmiMI	CAYNNNNRTG	1 cut(s)	143
SspDI	GGCGCC	1 cut(s)	61
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	3 cut(s)	29, 165, 210
StyI	CCWWGG	2 cut(s)	303, 366
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	2 cut(s)	132, 288
TaqI	TCGA	6 cut(s)	23, 68, 243, 330, 354, 435
TatI	WGTACW	1 cut(s)	123
TauI	GCSGC	7 cut(s)	45, 81, 100, 195, 225, 380, 383
TseI	GCWGC	1 cut(s)	349
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	161
VpaK11BI	GGWCC	5 cut(s)	117, 135, 163, 180, 307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.