Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002325

Physical Location & Seq

Genomic Coordinates Forward (+)

7045868 .. 7046080

Gene Structure 213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1060600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGCCGGTGCGCAAGGACGACGAGGTCAACATCGAGCGGATCACCCGAGAGAAGGTGAACGGGTCCACCATCAATGTCGGCATCAACCCCTCCAAGGTCGTCATCACCAAGCTCCGCCTCGACAAGGACGGCAAGGCCAAGGGCCGCGCCGTCGCTGACAAGGACAAAGGCACCAAGTTCACCGCAGAGGATATCATGCAAAACGTCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0000184 GO:0000278 GO:0000956 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006417 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006974 GO:0006977 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009266 GO:0009314 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009628 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010212 GO:0010332 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010948 GO:0015031 GO:0015833 GO:0015934 GO:0016020 GO:0016070 GO:0016071 GO:0016072 GO:0019222 GO:0019439 GO:0019538 GO:0022402 GO:0022613 GO:0022625 GO:0022626 GO:0023051 GO:0023052 GO:0023056 GO:0030330 GO:0030424 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031570 GO:0031571 GO:0031667 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033036 GO:0033267 GO:0033365 GO:0033554 GO:0034248 GO:0034250 GO:0034470 GO:0034613 GO:0034641 GO:0034644 GO:0034645 GO:0034655 GO:0034660 GO:0035556 GO:0042254 GO:0042273 GO:0042594 GO:0042770 GO:0042788 GO:0042886 GO:0042981 GO:0042995 GO:0043005 GO:0043043 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043195 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043516 GO:0043517 GO:0043603 GO:0043604 GO:0043679 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044306 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045047 GO:0045184 GO:0045202 GO:0045727 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0046700 GO:0046907 GO:0048027 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0070972 GO:0071156 GO:0071158 GO:0071214 GO:0071478 GO:0071479 GO:0071480 GO:0071482 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0072594 GO:0072599 GO:0072657 GO:0080090 GO:0080134 GO:0080135 GO:0090068 GO:0090150 GO:0090304 GO:0097159 GO:0097458 GO:0098588 GO:0098793 GO:0098805 GO:0104004 GO:0120025 GO:0120038 GO:0150034 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901796 GO:1901798 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902162 GO:1902164 GO:1902165 GO:1902167 GO:1902229 GO:1902231 GO:1902253 GO:1902255 GO:1902400 GO:1902402 GO:1902403 GO:1902531 GO:1902533 GO:1902806 GO:1902807 GO:1903047 GO:1904803 GO:1990904 GO:1990928 GO:2000045 GO:2000112 GO:2000134 GO:2001020 GO:2001022 GO:2001233 GO:2001235 GO:2001242 GO:2001244

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L26

Protein Analysis

71

Amino Acids

7.77

Weight (kDa)

9.4

Isoelectric Point (pI)

18.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L26	PF16906	2 - 45	2.5e-11	Ribosomal proteins L26 eukaryotic, L24P archaeal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49910 AT5G67510
fragaria_vesca	FvH4_1g17640 FvH4_5g24274 FvH4_6g36980
malus_domestica	MD02G1185200.v1.1 MD06G1158400.v1.1 MD12G1060600.v1.1 MD12G1243600.v1.1 MD14G1120400.v1.1 MD16G1170200.v1.1
prunus_persica	Prupe.3G002900_v2.0.a1 Prupe.6G221600_v2.0.a1
pyrus_communis	pycom02g15010 pycom06g14140 pycom14g13750
rosa_chinensis	RchiOBHm_Chr2g0107961 RchiOBHm_Chr2g0110121 RchiOBHm_Chr2g0149501
rosa_laevigata	RLG00000017629 RLG00000020414
rosa_multiflora	Rmu_sc0001484.1_g000030 Rmu_sc0005278.1_g000014 Rmu_sc0006867.1_g000007 Rmu_sc0008619.1_g000004
rosa_roxburghii	Rroxscaffold_2G00094390 Rroxscaffold_2G00098050 Rroxscaffold_2G00135780
rosa_rugosa	Rorug02G0149000 Rorug02G0412000 Rorug04G0124600
rosa_samantha	Rh2AG198300 Rh2AG472100 Rh2BG211100 Rh2BG484200 Rh2CG202900 Rh2CG219800 Rh2CG458000 Rh2DG205900 Rh2DG493400
rosa_wichuraiana	Rw2G015730 Rw2G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	23
Acc16I	TGCGCA	1 cut(s)	11
AccB1I	GGYRCC	1 cut(s)	170
AccBSI	CCGCTC	1 cut(s)	37
AccII	CGCG	1 cut(s)	147
AciI	CCGC	4 cut(s)	37, 115, 145, 183
AclWI	GGATC	1 cut(s)	47
AfiI	CCNNNNNNNGG	3 cut(s)	52, 94, 124
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
AlwI	GGATC	1 cut(s)	47
Ama87I	CYCGRG	1 cut(s)	45
AoxI	GGCC	2 cut(s)	135, 142
AspLEI	GCGC	2 cut(s)	12, 149
AspS9I	GGNCC	2 cut(s)	63, 142
AsuHPI	GGTGA	4 cut(s)	34, 67, 97, 172
AvaI	CYCGRG	1 cut(s)	45
AvaII	GGWCC	1 cut(s)	63
BanI	GGYRCC	1 cut(s)	170
BccI	CCATC	1 cut(s)	77
BceAI	ACGGC	2 cut(s)	134, 145
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
Bme18I	GGWCC	1 cut(s)	63
BmeT110I	CYCGRG	1 cut(s)	45
BmgT120I	GGNCC	2 cut(s)	63, 142
BmiI	GGNNCC	2 cut(s)	64, 172
BmsI	GCATC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	93, 138
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 94, 124
Bse118I	RCCGGY	1 cut(s)	4
BseDI	CCNNGG	2 cut(s)	93, 138
BseLI	CCNNNNNNNGG	3 cut(s)	52, 94, 124
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	2 cut(s)	137, 144
BshNI	GGYRCC	1 cut(s)	170
BsiHKCI	CYCGRG	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	5
BslI	CCNNNNNNNGG	3 cut(s)	52, 94, 124
BsnI	GGCC	2 cut(s)	137, 144
BsoBI	CYCGRG	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	39
BspACI	CCGC	4 cut(s)	37, 115, 145, 183
BspANI	GGCC	2 cut(s)	137, 144
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	64, 172
BspPI	GGATC	1 cut(s)	47
BspT107I	GGYRCC	1 cut(s)	170
BsrBI	CCGCTC	1 cut(s)	37
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	2 cut(s)	93, 138
BssMI	GATC	1 cut(s)	39
BssT1I	CCWWGG	2 cut(s)	93, 138
BstENI	CCTNNNNNAGG	1 cut(s)	122
BstFNI	CGCG	1 cut(s)	147
BstHHI	GCGC	2 cut(s)	12, 149
BstKTI	GATC	1 cut(s)	42
BstMBI	GATC	1 cut(s)	39
BstUI	CGCG	1 cut(s)	147
BsuRI	GGCC	2 cut(s)	137, 144
CfoI	GCGC	2 cut(s)	12, 149
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	2 cut(s)	63, 142
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	3 cut(s)	112, 137, 144
CviKI_1	RGCY	3 cut(s)	112, 137, 144
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
EciI	GGCGGA	1 cut(s)	104
Eco130I	CCWWGG	2 cut(s)	93, 138
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	63
Eco88I	CYCGRG	1 cut(s)	45
EcoNI	CCTNNNNNAGG	1 cut(s)	122
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	2 cut(s)	93, 138
ErhI	CCWWGG	2 cut(s)	93, 138
FaeI	CATG	1 cut(s)	199
FaiI	YATR	1 cut(s)	197
FatI	CATG	1 cut(s)	195
Fnu4HI	GCNGC	1 cut(s)	145
Fsp4HI	GCNGC	1 cut(s)	145
FspI	TGCGCA	1 cut(s)	11
GlaI	GCGC	2 cut(s)	11, 148
GluI	GCNGC	1 cut(s)	145
HaeIII	GGCC	2 cut(s)	137, 144
HapII	CCGG	1 cut(s)	5
HhaI	GCGC	2 cut(s)	12, 149
Hin1II	CATG	1 cut(s)	199
Hin6I	GCGC	2 cut(s)	10, 147
HinP1I	GCGC	2 cut(s)	10, 147
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	4 cut(s)	34, 67, 97, 172
Hpy166II	GTNNAC	4 cut(s)	28, 58, 66, 180
Hpy8I	GTNNAC	4 cut(s)	28, 58, 66, 180
Hpy99I	CGWCG	3 cut(s)	23, 155, 209
HpyAV	CCTTC	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	1 cut(s)	199
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	1 cut(s)	199
HspAI	GCGC	2 cut(s)	10, 147
Kzo9I	GATC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	117
LpnPI	CCDG	1 cut(s)	18
LweI	GCATC	1 cut(s)	90
MaeII	ACGT	1 cut(s)	204
MalI	GATC	1 cut(s)	41
MbiI	CCGCTC	1 cut(s)	37
MboI	GATC	1 cut(s)	39
MnlI	CCTC	4 cut(s)	16, 100, 128, 181
MspI	CCGG	1 cut(s)	5
MvnI	CGCG	1 cut(s)	147
NdeII	GATC	1 cut(s)	39
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	2 cut(s)	64, 172
NsbI	TGCGCA	1 cut(s)	11
PflFI	GACNNNGTC	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	146
PspN4I	GGNNCC	2 cut(s)	64, 172
PspPI	GGNCC	2 cut(s)	63, 142
PsyI	GACNNNGTC	1 cut(s)	23
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	1 cut(s)	39
Sau96I	GGNCC	2 cut(s)	63, 142
SetI	ASST	5 cut(s)	27, 57, 99, 114, 207
SfaNI	GCATC	1 cut(s)	90
SinI	GGWCC	1 cut(s)	63
SsiI	CCGC	4 cut(s)	37, 115, 145, 183
StyI	CCWWGG	2 cut(s)	93, 138
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	3 cut(s)	33, 120, 207
TauI	GCSGC	1 cut(s)	147
Tth111I	GACNNNGTC	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	63
XagI	CCTNNNNNAGG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.