Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002325

Physical Location & Seq

Genomic Coordinates Reverse (-)

29050210 .. 29050898

Gene Structure 689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g36980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAAGAGGAACCCCCGCGTCTCCAGCTCCCGCCGCAAGAGCCGCAAGGCTCACTTCACGGCGCCGTCGTCGGTCCGCCGCATCCTGATGAGCGCGCCGCTCTCCTCCGACCTCCGCACCAAGTACAGCGTCCGGTCCATGCCGGTGCGCAAGGACGACGAGGTCCAGGTTGTCCGTGGGACCTACAAGGGCCGCGAGGGCAAGGTCGTCCAGGTGTACCGCCGCAAGTGGGTGATCCACATCGAGCGCATCACCAGGGAGAAGGTGAACGGGTCAACAGTCAACGTCGGGATCAACCCTTCGAAGGTGGTGATCACCAAGCTCAGGTTGGACAAGGACCGGAAGTCGCTGCTGGACCGCAAGGCCAAGGGACGCGCCGCCGCGGATAAGGACAAAGGCACCAAGTTCACCGCCGAGGATATCATGCAGAACGTCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L26

Protein Analysis

147

Amino Acids

16.72

Weight (kDa)

11.14

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L26	PF16906	8 - 121	5.5e-37	Ribosomal proteins L26 eukaryotic, L24P archaeal
KOW	PF00467	51 - 82	1.6e-08	KOW motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49910 AT5G67510
fragaria_vesca	FvH4_1g17640 FvH4_5g24274 FvH4_6g36980
malus_domestica	MD02G1185200.v1.1 MD06G1158400.v1.1 MD12G1060600.v1.1 MD12G1243600.v1.1 MD14G1120400.v1.1 MD16G1170200.v1.1
prunus_persica	Prupe.3G002900_v2.0.a1 Prupe.6G221600_v2.0.a1
pyrus_communis	pycom02g15010 pycom06g14140 pycom14g13750
rosa_chinensis	RchiOBHm_Chr2g0107961 RchiOBHm_Chr2g0110121 RchiOBHm_Chr2g0149501
rosa_laevigata	RLG00000017629 RLG00000020414
rosa_multiflora	Rmu_sc0001484.1_g000030 Rmu_sc0005278.1_g000014 Rmu_sc0006867.1_g000007 Rmu_sc0008619.1_g000004
rosa_roxburghii	Rroxscaffold_2G00094390 Rroxscaffold_2G00098050 Rroxscaffold_2G00135780
rosa_rugosa	Rorug02G0149000 Rorug02G0412000 Rorug04G0124600
rosa_samantha	Rh2AG198300 Rh2AG472100 Rh2BG211100 Rh2BG484200 Rh2CG202900 Rh2CG219800 Rh2CG458000 Rh2DG205900 Rh2DG493400
rosa_wichuraiana	Rw2G015730 Rw2G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
Acc16I	TGCGCA	1 cut(s)	149
AccB1I	GGYRCC	2 cut(s)	61, 398
AccBSI	CCGCTC	1 cut(s)	100
AccI	GTMKAC	1 cut(s)	435
AccII	CGCG	5 cut(s)	18, 95, 195, 375, 383
AclWI	GGATC	2 cut(s)	229, 299
AcyI	GRCGYC	1 cut(s)	62
AfaI	GTAC	2 cut(s)	125, 218
AfiI	CCNNNNNNNGG	3 cut(s)	229, 304, 324
AhdI	GACNNNNNGTC	1 cut(s)	343
AjnI	CCWGG	3 cut(s)	165, 210, 254
AluBI	AGCT	2 cut(s)	27, 322
AluI	AGCT	2 cut(s)	27, 322
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	2 cut(s)	229, 299
AoxI	GGCC	2 cut(s)	190, 363
ApeKI	GCWGC	1 cut(s)	349
AspLEI	GCGC	6 cut(s)	64, 95, 97, 150, 249, 377
AspS9I	GGNCC	7 cut(s)	73, 135, 163, 180, 190, 337, 355
AsuHPI	GGTGA	6 cut(s)	244, 244, 277, 307, 322, 400
AsuII	TTCGAA	1 cut(s)	302
AvaII	GGWCC	6 cut(s)	73, 135, 163, 180, 337, 355
BanI	GGYRCC	2 cut(s)	61, 398
BbvI	GCAGC	1 cut(s)	336
BceAI	ACGGC	2 cut(s)	49, 75
BciT130I	CCWGG	3 cut(s)	167, 212, 256
BclI	TGATCA	1 cut(s)	312
BcoDI	GTCTC	1 cut(s)	25
BfoI	RGCGCY	1 cut(s)	65
BglI	GCCNNNNNGGC	1 cut(s)	198
BisI	GCNGC	9 cut(s)	34, 43, 79, 98, 193, 223, 350, 378, 381
BlsI	GCNGC	9 cut(s)	35, 44, 80, 99, 194, 224, 351, 379, 382
Bme1390I	CCNGG	3 cut(s)	167, 212, 256
Bme18I	GGWCC	6 cut(s)	73, 135, 163, 180, 337, 355
BmeRI	GACNNNNNGTC	1 cut(s)	343
BmgT120I	GGNCC	7 cut(s)	73, 135, 163, 180, 190, 337, 355
BmiI	GGNNCC	4 cut(s)	11, 63, 181, 400
BmrFI	CCNGG	3 cut(s)	167, 212, 256
BmsI	GCATC	2 cut(s)	90, 258
BpmI	CTGGAG	1 cut(s)	7
Bpu10I	CCTNAGC	1 cut(s)	323
Bpu14I	TTCGAA	1 cut(s)	302
BsaBI	GATNNNNATC	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	62
BsaJI	CCNNGG	5 cut(s)	175, 255, 366, 381, 414
BsaWI	WCCGGW	2 cut(s)	132, 339
Bsc4I	CCNNNNNNNGG	3 cut(s)	229, 304, 324
Bse118I	RCCGGY	1 cut(s)	142
Bse8I	GATNNNNATC	1 cut(s)	239
BseBI	CCWGG	3 cut(s)	167, 212, 256
BseDI	CCNNGG	5 cut(s)	175, 255, 366, 381, 414
BseGI	GGATG	1 cut(s)	81
BseJI	GATNNNNATC	1 cut(s)	239
BseLI	CCNNNNNNNGG	3 cut(s)	229, 304, 324
BseMII	CTCAG	1 cut(s)	337
BsePI	GCGCGC	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	94
BseXI	GCAGC	1 cut(s)	336
Bsh1236I	CGCG	5 cut(s)	18, 95, 195, 375, 383
BshFI	GGCC	2 cut(s)	192, 365
BshNI	GGYRCC	2 cut(s)	61, 398
BsiSI	CCGG	3 cut(s)	133, 143, 340
BslFI	GGGAC	2 cut(s)	193, 384
BslI	CCNNNNNNNGG	3 cut(s)	229, 304, 324
BsmAI	GTCTC	1 cut(s)	25
BsmBI	CGTCTC	1 cut(s)	25
BsmFI	GGGAC	2 cut(s)	193, 384
BsnI	GGCC	2 cut(s)	192, 365
Bsp119I	TTCGAA	1 cut(s)	302
Bsp143I	GATC	3 cut(s)	234, 291, 312
BspANI	GGCC	2 cut(s)	192, 365
BspCNI	CTCAG	1 cut(s)	336
BspFNI	CGCG	5 cut(s)	18, 95, 195, 375, 383
BspLI	GGNNCC	4 cut(s)	11, 63, 181, 400
BspPI	GGATC	2 cut(s)	229, 299
BspT104I	TTCGAA	1 cut(s)	302
BspT107I	GGYRCC	2 cut(s)	61, 398
BsrBI	CCGCTC	1 cut(s)	100
BsrFI	RCCGGY	1 cut(s)	142
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	5 cut(s)	175, 255, 366, 381, 414
BssHII	GCGCGC	1 cut(s)	93
BssMI	GATC	3 cut(s)	234, 291, 312
BssNI	GRCGYC	1 cut(s)	62
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	3 cut(s)	167, 212, 256
Bst4CI	ACNGT	1 cut(s)	280
BstACI	GRCGYC	1 cut(s)	62
BstBI	TTCGAA	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	323
BstDSI	CCRYGG	2 cut(s)	175, 381
BstF5I	GGATG	1 cut(s)	81
BstFNI	CGCG	5 cut(s)	18, 95, 195, 375, 383
BstH2I	RGCGCY	1 cut(s)	65
BstHHI	GCGC	6 cut(s)	64, 95, 97, 150, 249, 377
BstKTI	GATC	3 cut(s)	237, 294, 315
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	3 cut(s)	234, 291, 312
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 33, 39, 42, 198
BstNI	CCWGG	3 cut(s)	167, 212, 256
BstSCI	CCNGG	3 cut(s)	165, 210, 254
BstUI	CGCG	5 cut(s)	18, 95, 195, 375, 383
BstV1I	GCAGC	1 cut(s)	336
BsuRI	GGCC	2 cut(s)	192, 365
BtgI	CCRYGG	2 cut(s)	175, 381
BtsCI	GGATG	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	95
CfoI	GCGC	6 cut(s)	64, 95, 97, 150, 249, 377
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	7 cut(s)	73, 135, 163, 180, 190, 337, 355
Cfr42I	CCGCGG	1 cut(s)	384
CpoI	CGGWCCG	1 cut(s)	73
CseI	GACGC	3 cut(s)	7, 118, 381
Csp6I	GTAC	2 cut(s)	124, 217
CspI	CGGWCCG	1 cut(s)	73
CviAII	CATG	2 cut(s)	139, 424
CviJI	RGCY	6 cut(s)	27, 42, 50, 192, 322, 365
CviKI_1	RGCY	6 cut(s)	27, 42, 50, 192, 322, 365
CviQI	GTAC	2 cut(s)	124, 217
DdeI	CTNAG	1 cut(s)	323
DinI	GGCGCC	1 cut(s)	63
DpnI	GATC	3 cut(s)	236, 293, 314
DpnII	GATC	3 cut(s)	234, 291, 312
DrdI	GACNNNNNNGTC	1 cut(s)	161
DriI	GACNNNNNGTC	1 cut(s)	343
DseDI	GACNNNNNNGTC	1 cut(s)	161
Eam1105I	GACNNNNNGTC	1 cut(s)	343
EciI	GGCGGA	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	366
Eco32I	GATATC	1 cut(s)	421
Eco47I	GGWCC	6 cut(s)	73, 135, 163, 180, 337, 355
EcoO109I	RGGNCCY	1 cut(s)	180
EcoRII	CCWGG	3 cut(s)	165, 210, 254
EcoRV	GATATC	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	366
EgeI	GGCGCC	1 cut(s)	63
EheI	GGCGCC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	366
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	2 cut(s)	142, 427
FaiI	YATR	2 cut(s)	140, 425
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FaqI	GGGAC	2 cut(s)	193, 384
FatI	CATG	2 cut(s)	138, 423
FauI	CCCGC	2 cut(s)	23, 38
FbaI	TGATCA	1 cut(s)	312
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	9 cut(s)	34, 43, 79, 98, 193, 223, 350, 378, 381
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	9 cut(s)	34, 43, 79, 98, 193, 223, 350, 378, 381
FspI	TGCGCA	1 cut(s)	149
GlaI	GCGC	6 cut(s)	63, 94, 96, 149, 248, 376
GluI	GCNGC	9 cut(s)	34, 43, 79, 98, 193, 223, 350, 378, 381
GsuI	CTGGAG	1 cut(s)	7
HaeII	RGCGCY	1 cut(s)	65
HaeIII	GGCC	2 cut(s)	192, 365
HapII	CCGG	3 cut(s)	133, 143, 340
HgaI	GACGC	3 cut(s)	7, 118, 381
HhaI	GCGC	6 cut(s)	64, 95, 97, 150, 249, 377
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	2 cut(s)	142, 427
Hin6I	GCGC	6 cut(s)	62, 93, 95, 148, 247, 375
HinP1I	GCGC	6 cut(s)	62, 93, 95, 148, 247, 375
HincII	GTYRAC	3 cut(s)	276, 283, 436
HindII	GTYRAC	3 cut(s)	276, 283, 436
HpaII	CCGG	3 cut(s)	133, 143, 340
HphI	GGTGA	6 cut(s)	244, 244, 277, 307, 322, 400
Hpy166II	GTNNAC	6 cut(s)	217, 268, 276, 283, 408, 436
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	2 cut(s)	85, 289
Hpy8I	GTNNAC	6 cut(s)	217, 268, 276, 283, 408, 436
Hpy99I	CGWCG	5 cut(s)	70, 73, 161, 290, 437
HpyAV	CCTTC	3 cut(s)	256, 298, 309
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	2 cut(s)	285, 432
HpyCH4V	TGCA	1 cut(s)	427
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 33, 39, 42, 198
HpyF3I	CTNAG	1 cut(s)	323
HpySE526I	ACGT	2 cut(s)	285, 432
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	2 cut(s)	142, 427
HspAI	GCGC	6 cut(s)	62, 93, 95, 148, 247, 375
KasI	GGCGCC	1 cut(s)	61
Ksp22I	TGATCA	1 cut(s)	312
KspI	CCGCGG	1 cut(s)	384
Kzo9I	GATC	3 cut(s)	234, 291, 312
LmnI	GCTCC	1 cut(s)	32
Lsp1109I	GCAGC	1 cut(s)	336
LweI	GCATC	2 cut(s)	90, 258
MaeII	ACGT	2 cut(s)	285, 432
MalI	GATC	3 cut(s)	236, 293, 314
MbiI	CCGCTC	1 cut(s)	100
MboI	GATC	3 cut(s)	234, 291, 312
MboII	GAAGA	1 cut(s)	16
Mly113I	GGCGCC	1 cut(s)	62
MmeI	TCCRAC	2 cut(s)	132, 309
MnlI	CCTC	5 cut(s)	115, 122, 154, 190, 409
MslI	CAYNNNNRTG	2 cut(s)	86, 143
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	3 cut(s)	133, 143, 340
MspR9I	CCNGG	3 cut(s)	167, 212, 256
MvaI	CCWGG	3 cut(s)	167, 212, 256
MvnI	CGCG	5 cut(s)	18, 95, 195, 375, 383
MwoI	GCNNNNNNNGC	5 cut(s)	24, 33, 39, 42, 198
NarI	GGCGCC	1 cut(s)	62
NdeII	GATC	3 cut(s)	234, 291, 312
NlaIII	CATG	2 cut(s)	142, 427
NlaIV	GGNNCC	4 cut(s)	11, 63, 181, 400
NmeAIII	GCCGAG	1 cut(s)	439
NsbI	TGCGCA	1 cut(s)	149
NspV	TTCGAA	1 cut(s)	302
PauI	GCGCGC	1 cut(s)	93
PcsI	WCGNNNNNNNCGW	1 cut(s)	65
PflFI	GACNNNGTC	1 cut(s)	161
PkrI	GCNGC	9 cut(s)	35, 44, 80, 99, 194, 224, 351, 379, 382
PluTI	GGCGCC	1 cut(s)	65
PpuMI	RGGWCCY	1 cut(s)	180
Psp5II	RGGWCCY	1 cut(s)	180
Psp6I	CCWGG	3 cut(s)	165, 210, 254
PspGI	CCWGG	3 cut(s)	165, 210, 254
PspN4I	GGNNCC	4 cut(s)	11, 63, 181, 400
PspPI	GGNCC	7 cut(s)	73, 135, 163, 180, 190, 337, 355
PspPPI	RGGWCCY	1 cut(s)	180
PsyI	GACNNNGTC	1 cut(s)	161
PteI	GCGCGC	1 cut(s)	93
RsaI	GTAC	2 cut(s)	125, 218
RsaNI	GTAC	2 cut(s)	124, 217
RseI	CAYNNNNRTG	2 cut(s)	86, 143
Rsr2I	CGGWCCG	1 cut(s)	73
RsrII	CGGWCCG	1 cut(s)	73
SacII	CCGCGG	1 cut(s)	384
SalI	GTCGAC	1 cut(s)	434
SatI	GCNGC	9 cut(s)	34, 43, 79, 98, 193, 223, 350, 378, 381
Sau3AI	GATC	3 cut(s)	234, 291, 312
Sau96I	GGNCC	7 cut(s)	73, 135, 163, 180, 190, 337, 355
ScrFI	CCNGG	3 cut(s)	167, 212, 256
SfaNI	GCATC	2 cut(s)	90, 258
SfoI	GGCGCC	1 cut(s)	63
Sfr303I	CCGCGG	1 cut(s)	384
SfuI	TTCGAA	1 cut(s)	302
SgrBI	CCGCGG	1 cut(s)	384
SinI	GGWCC	6 cut(s)	73, 135, 163, 180, 337, 355
SmiMI	CAYNNNNRTG	2 cut(s)	86, 143
SspDI	GGCGCC	1 cut(s)	61
StyD4I	CCNGG	3 cut(s)	165, 210, 254
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	2 cut(s)	288, 435
TaqI	TCGA	3 cut(s)	243, 302, 435
TaqII	GACCGA	1 cut(s)	61
TatI	WGTACW	1 cut(s)	123
TauI	GCSGC	8 cut(s)	36, 45, 81, 100, 195, 225, 380, 383
TseI	GCWGC	1 cut(s)	349
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	164
Tth111I	GACNNNGTC	1 cut(s)	161
VpaK11BI	GGWCC	6 cut(s)	73, 135, 163, 180, 337, 355
XcmI	CCANNNNNNNNNTGG	2 cut(s)	173, 325
XmiI	GTMKAC	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.