Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002325

Physical Location & Seq

Genomic Coordinates Reverse (-)

16809135 .. 16809575

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1185200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAAGTACAATCCCCGCGTCACCAGCTCCCGGCGGAAGAACCGCAAGGCTCACTTCACCGCGCCGTCCAGCGTGCGCCGCGTGCTGATGAGCGCCCCTCTCTCCCCCGACCTCCGTTCCAAGTACAACGTCCGATCCATGCCGGTGCGCAAGGACGACGAGGTCCAGGTGGTCCGCGGGACCTTCAAGGGCCGCGAGGGCAAGGTCGTCCAGGTCTACCGCCGCAAATGGGTCATCCACATCGAACGAATCACCCGCGAGAAGGTCAATGGCTCCACCGTGAACGTCGGAATCAACCCATCCAAGGTGGTCGTCACCAAGCTCAGGCTGGACAAGGACCGCAAGTCTCTGCTCGACCGCAAGGCCAAGGGCCGCGCCGCCGCAGACAAGGACAAGGGTACCAAGTTCACCGCCGAGGATATCATGCAGAACGTCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L26

Protein Analysis

147

Amino Acids

16.75

Weight (kDa)

11.02

Isoelectric Point (pI)

37.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L26	PF16906	8 - 121	1.8e-37	Ribosomal proteins L26 eukaryotic, L24P archaeal
KOW	PF00467	51 - 82	1.4e-08	KOW motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49910 AT5G67510
fragaria_vesca	FvH4_1g17640 FvH4_5g24274 FvH4_6g36980
malus_domestica	MD02G1185200.v1.1 MD06G1158400.v1.1 MD12G1060600.v1.1 MD12G1243600.v1.1 MD14G1120400.v1.1 MD16G1170200.v1.1
prunus_persica	Prupe.3G002900_v2.0.a1 Prupe.6G221600_v2.0.a1
pyrus_communis	pycom02g15010 pycom06g14140 pycom14g13750
rosa_chinensis	RchiOBHm_Chr2g0107961 RchiOBHm_Chr2g0110121 RchiOBHm_Chr2g0149501
rosa_laevigata	RLG00000017629 RLG00000020414
rosa_multiflora	Rmu_sc0001484.1_g000030 Rmu_sc0005278.1_g000014 Rmu_sc0006867.1_g000007 Rmu_sc0008619.1_g000004
rosa_roxburghii	Rroxscaffold_2G00094390 Rroxscaffold_2G00098050 Rroxscaffold_2G00135780
rosa_rugosa	Rorug02G0149000 Rorug02G0412000 Rorug04G0124600
rosa_samantha	Rh2AG198300 Rh2AG472100 Rh2BG211100 Rh2BG484200 Rh2CG202900 Rh2CG219800 Rh2CG458000 Rh2DG205900 Rh2DG493400
rosa_wichuraiana	Rw2G015730 Rw2G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
Acc16I	TGCGCA	1 cut(s)	149
Acc65I	GGTACC	1 cut(s)	398
AccB1I	GGYRCC	1 cut(s)	398
AccI	GTMKAC	2 cut(s)	216, 435
AccII	CGCG	7 cut(s)	18, 62, 81, 177, 195, 258, 375
AclWI	GGATC	1 cut(s)	129
AfaI	GTAC	3 cut(s)	8, 125, 400
AfiI	CCNNNNNNNGG	5 cut(s)	30, 229, 262, 304, 324
AgsI	TTSAA	1 cut(s)	187
AhdI	GACNNNNNGTC	1 cut(s)	343
AjnI	CCWGG	2 cut(s)	165, 210
AluBI	AGCT	2 cut(s)	27, 322
AluI	AGCT	2 cut(s)	27, 322
Alw26I	GTCTC	1 cut(s)	351
AlwI	GGATC	1 cut(s)	129
AoxI	GGCC	3 cut(s)	190, 363, 370
Asp718I	GGTACC	1 cut(s)	398
AspLEI	GCGC	5 cut(s)	64, 78, 95, 150, 377
AspS9I	GGNCC	6 cut(s)	163, 172, 180, 190, 337, 370
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	5 cut(s)	13, 49, 244, 307, 400
AvaII	GGWCC	4 cut(s)	163, 172, 180, 337
BaeI	ACNNNNGTAYC	2 cut(s)	382, 415
BanI	GGYRCC	1 cut(s)	398
BccI	CCATC	1 cut(s)	307
BceAI	ACGGC	1 cut(s)	49
BciT130I	CCWGG	2 cut(s)	167, 212
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	351
BfoI	RGCGCY	1 cut(s)	96
BglI	GCCNNNNNGGC	1 cut(s)	198
BisI	GCNGC	6 cut(s)	79, 193, 223, 373, 378, 381
BlsI	GCNGC	6 cut(s)	80, 194, 224, 374, 379, 382
Bme1390I	CCNGG	3 cut(s)	31, 167, 212
Bme18I	GGWCC	4 cut(s)	163, 172, 180, 337
BmeRI	GACNNNNNGTC	1 cut(s)	343
BmgT120I	GGNCC	6 cut(s)	163, 172, 180, 190, 337, 370
BmiI	GGNNCC	3 cut(s)	181, 274, 400
BmrFI	CCNGG	3 cut(s)	31, 167, 212
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
Bpu10I	CCTNAGC	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	31
BsaJI	CCNNGG	4 cut(s)	175, 303, 366, 414
Bsc4I	CCNNNNNNNGG	5 cut(s)	30, 229, 262, 304, 324
Bse118I	RCCGGY	1 cut(s)	142
BseBI	CCWGG	2 cut(s)	167, 212
BseDI	CCNNGG	4 cut(s)	175, 303, 366, 414
BseGI	GGATG	2 cut(s)	234, 299
BseLI	CCNNNNNNNGG	5 cut(s)	30, 229, 262, 304, 324
BseMII	CTCAG	1 cut(s)	337
Bsh1236I	CGCG	7 cut(s)	18, 62, 81, 177, 195, 258, 375
Bsh1285I	CGRYCG	1 cut(s)	358
BshFI	GGCC	3 cut(s)	192, 365, 372
BshNI	GGYRCC	1 cut(s)	398
BsiEI	CGRYCG	1 cut(s)	358
BsiSI	CCGG	2 cut(s)	31, 143
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	5 cut(s)	30, 229, 262, 304, 324
BsmAI	GTCTC	1 cut(s)	351
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	3 cut(s)	192, 365, 372
Bsp143I	GATC	1 cut(s)	134
BspANI	GGCC	3 cut(s)	192, 365, 372
BspCNI	CTCAG	1 cut(s)	336
BspFNI	CGCG	7 cut(s)	18, 62, 81, 177, 195, 258, 375
BspLI	GGNNCC	3 cut(s)	181, 274, 400
BspPI	GGATC	1 cut(s)	129
BspT107I	GGYRCC	1 cut(s)	398
BsrFI	RCCGGY	1 cut(s)	142
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	4 cut(s)	175, 303, 366, 414
BssMI	GATC	1 cut(s)	134
BssT1I	CCWWGG	2 cut(s)	303, 366
Bst2UI	CCWGG	2 cut(s)	167, 212
Bst4CI	ACNGT	1 cut(s)	280
BstC8I	GCNNGC	2 cut(s)	74, 83
BstDEI	CTNAG	1 cut(s)	323
BstDSI	CCRYGG	1 cut(s)	175
BstF5I	GGATG	2 cut(s)	234, 299
BstFNI	CGCG	7 cut(s)	18, 62, 81, 177, 195, 258, 375
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	5 cut(s)	64, 78, 95, 150, 377
BstKTI	GATC	1 cut(s)	137
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	1 cut(s)	134
BstMCI	CGRYCG	1 cut(s)	358
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 78, 82, 198
BstNI	CCWGG	2 cut(s)	167, 212
BstSCI	CCNGG	3 cut(s)	29, 165, 210
BstUI	CGCG	7 cut(s)	18, 62, 81, 177, 195, 258, 375
BsuRI	GGCC	3 cut(s)	192, 365, 372
BtgI	CCRYGG	1 cut(s)	175
BtsCI	GGATG	2 cut(s)	234, 299
Cac8I	GCNNGC	2 cut(s)	74, 83
CfoI	GCGC	5 cut(s)	64, 78, 95, 150, 377
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	6 cut(s)	163, 172, 180, 190, 337, 370
Cfr42I	CCGCGG	1 cut(s)	178
CseI	GACGC	1 cut(s)	7
Csp6I	GTAC	3 cut(s)	7, 124, 399
CviAII	CATG	2 cut(s)	139, 424
CviJI	RGCY	8 cut(s)	27, 50, 192, 273, 322, 328, 365, 372
CviKI_1	RGCY	8 cut(s)	27, 50, 192, 273, 322, 328, 365, 372
CviQI	GTAC	3 cut(s)	7, 124, 399
DdeI	CTNAG	1 cut(s)	323
DpnI	GATC	1 cut(s)	136
DpnII	GATC	1 cut(s)	134
DrdI	GACNNNNNNGTC	1 cut(s)	161
DriI	GACNNNNNGTC	1 cut(s)	343
DseDI	GACNNNNNNGTC	1 cut(s)	161
Eam1105I	GACNNNNNGTC	1 cut(s)	343
EciI	GGCGGA	1 cut(s)	49
Eco130I	CCWWGG	2 cut(s)	303, 366
Eco32I	GATATC	1 cut(s)	421
Eco47I	GGWCC	4 cut(s)	163, 172, 180, 337
EcoO109I	RGGNCCY	1 cut(s)	180
EcoRII	CCWGG	2 cut(s)	165, 210
EcoRV	GATATC	1 cut(s)	421
EcoT14I	CCWWGG	2 cut(s)	303, 366
ErhI	CCWWGG	2 cut(s)	303, 366
FaeI	CATG	2 cut(s)	142, 427
FaiI	YATR	2 cut(s)	140, 425
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	2 cut(s)	138, 423
FauI	CCCGC	3 cut(s)	23, 170, 263
FblI	GTMKAC	2 cut(s)	216, 435
Fnu4HI	GCNGC	6 cut(s)	79, 193, 223, 373, 378, 381
FokI	GGATG	2 cut(s)	221, 286
Fsp4HI	GCNGC	6 cut(s)	79, 193, 223, 373, 378, 381
FspI	TGCGCA	1 cut(s)	149
GlaI	GCGC	5 cut(s)	63, 77, 94, 149, 376
GluI	GCNGC	6 cut(s)	79, 193, 223, 373, 378, 381
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	3 cut(s)	192, 365, 372
HapII	CCGG	2 cut(s)	31, 143
HgaI	GACGC	1 cut(s)	7
HhaI	GCGC	5 cut(s)	64, 78, 95, 150, 377
Hin1II	CATG	2 cut(s)	142, 427
Hin6I	GCGC	5 cut(s)	62, 76, 93, 148, 375
HinP1I	GCGC	5 cut(s)	62, 76, 93, 148, 375
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	2 cut(s)	249, 291
HpaII	CCGG	2 cut(s)	31, 143
HphI	GGTGA	5 cut(s)	13, 49, 244, 307, 400
Hpy166II	GTNNAC	4 cut(s)	217, 283, 408, 436
Hpy188I	TCNGA	2 cut(s)	134, 290
Hpy8I	GTNNAC	4 cut(s)	217, 283, 408, 436
Hpy99I	CGWCG	3 cut(s)	161, 290, 437
HpyAV	CCTTC	2 cut(s)	193, 256
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	3 cut(s)	129, 285, 432
HpyCH4V	TGCA	1 cut(s)	427
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 78, 82, 198
HpyF3I	CTNAG	1 cut(s)	323
HpySE526I	ACGT	3 cut(s)	129, 285, 432
Hsp92II	CATG	2 cut(s)	142, 427
HspAI	GCGC	5 cut(s)	62, 76, 93, 148, 375
KpnI	GGTACC	1 cut(s)	402
KspI	CCGCGG	1 cut(s)	178
Kzo9I	GATC	1 cut(s)	134
LmnI	GCTCC	2 cut(s)	32, 278
MaeII	ACGT	3 cut(s)	129, 285, 432
MaeIII	GTNAC	2 cut(s)	19, 313
MalI	GATC	1 cut(s)	136
MboI	GATC	1 cut(s)	134
MboII	GAAGA	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	5 cut(s)	108, 122, 154, 190, 409
MslI	CAYNNNNRTG	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	177
MspI	CCGG	2 cut(s)	31, 143
MspR9I	CCNGG	3 cut(s)	31, 167, 212
MvaI	CCWGG	2 cut(s)	167, 212
MvnI	CGCG	7 cut(s)	18, 62, 81, 177, 195, 258, 375
MwoI	GCNNNNNNNGC	4 cut(s)	24, 78, 82, 198
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	1 cut(s)	134
NlaIII	CATG	2 cut(s)	142, 427
NlaIV	GGNNCC	3 cut(s)	181, 274, 400
NmeAIII	GCCGAG	1 cut(s)	439
NmuCI	GTSAC	2 cut(s)	19, 313
NsbI	TGCGCA	1 cut(s)	149
PfeI	GAWTC	2 cut(s)	249, 291
PflFI	GACNNNGTC	1 cut(s)	161
PkrI	GCNGC	6 cut(s)	80, 194, 224, 374, 379, 382
PpuMI	RGGWCCY	1 cut(s)	180
Psp5II	RGGWCCY	1 cut(s)	180
Psp6I	CCWGG	2 cut(s)	165, 210
PspGI	CCWGG	2 cut(s)	165, 210
PspN4I	GGNNCC	3 cut(s)	181, 274, 400
PspPI	GGNCC	6 cut(s)	163, 172, 180, 190, 337, 370
PspPPI	RGGWCCY	1 cut(s)	180
PsyI	GACNNNGTC	1 cut(s)	161
RsaI	GTAC	3 cut(s)	8, 125, 400
RsaNI	GTAC	3 cut(s)	7, 124, 399
RseI	CAYNNNNRTG	1 cut(s)	143
SacII	CCGCGG	1 cut(s)	178
SalI	GTCGAC	1 cut(s)	434
SatI	GCNGC	6 cut(s)	79, 193, 223, 373, 378, 381
Sau3AI	GATC	1 cut(s)	134
Sau96I	GGNCC	6 cut(s)	163, 172, 180, 190, 337, 370
ScrFI	CCNGG	3 cut(s)	31, 167, 212
Sfr303I	CCGCGG	1 cut(s)	178
SgrBI	CCGCGG	1 cut(s)	178
SinI	GGWCC	4 cut(s)	163, 172, 180, 337
SmiMI	CAYNNNNRTG	1 cut(s)	143
StyD4I	CCNGG	3 cut(s)	29, 165, 210
StyI	CCWWGG	2 cut(s)	303, 366
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	3 cut(s)	132, 288, 435
TaqI	TCGA	3 cut(s)	243, 354, 435
TatI	WGTACW	2 cut(s)	6, 123
TauI	GCSGC	6 cut(s)	81, 195, 225, 375, 380, 383
TfiI	GAWTC	2 cut(s)	249, 291
TseFI	GTSAC	2 cut(s)	19, 313
Tsp45I	GTSAC	2 cut(s)	19, 313
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	104
Tth111I	GACNNNGTC	1 cut(s)	161
VpaK11BI	GGWCC	4 cut(s)	163, 172, 180, 337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XmiI	GTMKAC	2 cut(s)	216, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.