Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002325

Physical Location & Seq

Genomic Coordinates Forward (+)

22689575 .. 22690328

Gene Structure 754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G221600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAAGTACAATCCCCGCGTCACCAGCTCTAGGCGGAAGAACCGCAAGGCTCACTTCACCGCGCCGTCGAGCGTGAGGCGGGTGTTGATGAGCGCGCCCCTCTCCTCAGACCTCCGCGCCAAGCACAACGCCCGATCCATGCCGGTGCGCAAGGACGACGAGGTCCAGGTGGTGCGCGGGACCTACAAGGGTCGCGAAGGCAAGGTTGTCCAGGTGTATCGCCGAAAGTGGGTCATCCATATCGAGCGTATCACCAGAGAGAAGGTCAACGGTTCCACGGTCAACGTCGGCATCAACCCATCGAAGGTGGTCATCACCAAGCTCAGGATCGACAAGGACCGCAAGTCTCTGCTCGACCGCAAGGCCAAGGGTCGCGCCGCTGCGGACAAGGACAAGGGCACCAAGTTCACAGCTGAGGATATCATGCAGAACGTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L26

Protein Analysis

147

Amino Acids

16.7

Weight (kDa)

11.02

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49910 AT5G67510
fragaria_vesca	FvH4_1g17640 FvH4_5g24274 FvH4_6g36980
malus_domestica	MD02G1185200.v1.1 MD06G1158400.v1.1 MD12G1060600.v1.1 MD12G1243600.v1.1 MD14G1120400.v1.1 MD16G1170200.v1.1
prunus_persica	Prupe.3G002900_v2.0.a1 Prupe.6G221600_v2.0.a1
pyrus_communis	pycom02g15010 pycom06g14140 pycom14g13750
rosa_chinensis	RchiOBHm_Chr2g0107961 RchiOBHm_Chr2g0110121 RchiOBHm_Chr2g0149501
rosa_laevigata	RLG00000017629 RLG00000020414
rosa_multiflora	Rmu_sc0001484.1_g000030 Rmu_sc0005278.1_g000014 Rmu_sc0006867.1_g000007 Rmu_sc0008619.1_g000004
rosa_roxburghii	Rroxscaffold_2G00094390 Rroxscaffold_2G00098050 Rroxscaffold_2G00135780
rosa_rugosa	Rorug02G0149000 Rorug02G0412000 Rorug04G0124600
rosa_samantha	Rh2AG198300 Rh2AG472100 Rh2BG211100 Rh2BG484200 Rh2CG202900 Rh2CG219800 Rh2CG458000 Rh2DG205900 Rh2DG493400
rosa_wichuraiana	Rw2G015730 Rw2G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
Acc16I	TGCGCA	1 cut(s)	149
AccB1I	GGYRCC	1 cut(s)	398
AccII	CGCG	7 cut(s)	18, 62, 95, 117, 177, 195, 375
AclI	AACGTT	1 cut(s)	432
AclWI	GGATC	2 cut(s)	129, 335
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	4 cut(s)	30, 229, 304, 324
AhdI	GACNNNNNGTC	1 cut(s)	343
AjnI	CCWGG	2 cut(s)	165, 210
AluBI	AGCT	3 cut(s)	27, 322, 413
AluI	AGCT	3 cut(s)	27, 322, 413
Alw26I	GTCTC	1 cut(s)	351
AlwI	GGATC	2 cut(s)	129, 335
AoxI	GGCC	1 cut(s)	363
ApeKI	GCWGC	1 cut(s)	380
AspLEI	GCGC	7 cut(s)	64, 95, 97, 119, 150, 177, 377
AspS9I	GGNCC	3 cut(s)	163, 180, 337
AsuHPI	GGTGA	4 cut(s)	13, 49, 244, 307
AvaII	GGWCC	3 cut(s)	163, 180, 337
BaeGI	GKGCMC	1 cut(s)	401
BanI	GGYRCC	1 cut(s)	398
BbvCI	CCTCAGC	1 cut(s)	414
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	1 cut(s)	307
BceAI	ACGGC	1 cut(s)	49
BciT130I	CCWGG	2 cut(s)	167, 212
BcoDI	GTCTC	1 cut(s)	351
BfaI	CTAG	1 cut(s)	30
BisI	GCNGC	2 cut(s)	378, 381
BlsI	GCNGC	2 cut(s)	379, 382
Bme1390I	CCNGG	2 cut(s)	167, 212
Bme18I	GGWCC	3 cut(s)	163, 180, 337
BmeRI	GACNNNNNGTC	1 cut(s)	343
BmgT120I	GGNCC	3 cut(s)	163, 180, 337
BmiI	GGNNCC	3 cut(s)	181, 274, 400
BmrFI	CCNGG	2 cut(s)	167, 212
BmsI	GCATC	1 cut(s)	300
Bpu10I	CCTNAGC	2 cut(s)	323, 414
BsaJI	CCNNGG	2 cut(s)	276, 366
Bsc4I	CCNNNNNNNGG	4 cut(s)	30, 229, 304, 324
Bse118I	RCCGGY	1 cut(s)	142
BseBI	CCWGG	2 cut(s)	167, 212
BseDI	CCNNGG	2 cut(s)	276, 366
BseGI	GGATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	4 cut(s)	30, 229, 304, 324
BseMII	CTCAG	3 cut(s)	120, 337, 405
BsePI	GCGCGC	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	94
BseSI	GKGCMC	1 cut(s)	401
BseXI	GCAGC	1 cut(s)	367
Bsh1236I	CGCG	7 cut(s)	18, 62, 95, 117, 177, 195, 375
Bsh1285I	CGRYCG	1 cut(s)	358
BshFI	GGCC	1 cut(s)	365
BshNI	GGYRCC	1 cut(s)	398
BsiEI	CGRYCG	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	4 cut(s)	30, 229, 304, 324
BsmAI	GTCTC	1 cut(s)	351
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp143I	GATC	2 cut(s)	134, 327
Bsp68I	TCGCGA	1 cut(s)	195
BspANI	GGCC	1 cut(s)	365
BspCNI	CTCAG	3 cut(s)	119, 336, 406
BspFNI	CGCG	7 cut(s)	18, 62, 95, 117, 177, 195, 375
BspLI	GGNNCC	3 cut(s)	181, 274, 400
BspPI	GGATC	2 cut(s)	129, 335
BspT107I	GGYRCC	1 cut(s)	398
BsrFI	RCCGGY	1 cut(s)	142
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	2 cut(s)	276, 366
BssHII	GCGCGC	1 cut(s)	93
BssMI	GATC	2 cut(s)	134, 327
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	2 cut(s)	167, 212
Bst4CI	ACNGT	2 cut(s)	272, 280
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	3 cut(s)	106, 323, 414
BstDSI	CCRYGG	1 cut(s)	276
BstF5I	GGATG	1 cut(s)	234
BstFNI	CGCG	7 cut(s)	18, 62, 95, 117, 177, 195, 375
BstHHI	GCGC	7 cut(s)	64, 95, 97, 119, 150, 177, 377
BstKTI	GATC	2 cut(s)	137, 330
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	2 cut(s)	134, 327
BstMCI	CGRYCG	1 cut(s)	358
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstNI	CCWGG	2 cut(s)	167, 212
BstSCI	CCNGG	2 cut(s)	165, 210
BstSLI	GKGCMC	1 cut(s)	401
BstUI	CGCG	7 cut(s)	18, 62, 95, 117, 177, 195, 375
BstV1I	GCAGC	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	365
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	234
BtuMI	TCGCGA	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	95
CfoI	GCGC	7 cut(s)	64, 95, 97, 119, 150, 177, 377
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	3 cut(s)	163, 180, 337
CseI	GACGC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	2 cut(s)	139, 424
CviJI	RGCY	5 cut(s)	27, 50, 322, 365, 413
CviKI_1	RGCY	5 cut(s)	27, 50, 322, 365, 413
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	3 cut(s)	106, 323, 414
DpnI	GATC	2 cut(s)	136, 329
DpnII	GATC	2 cut(s)	134, 327
DrdI	GACNNNNNNGTC	1 cut(s)	161
DriI	GACNNNNNGTC	1 cut(s)	343
DseDI	GACNNNNNNGTC	1 cut(s)	161
Eam1105I	GACNNNNNGTC	1 cut(s)	343
EciI	GGCGGA	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	366
Eco32I	GATATC	1 cut(s)	421
Eco47I	GGWCC	3 cut(s)	163, 180, 337
EcoO109I	RGGNCCY	1 cut(s)	180
EcoRII	CCWGG	2 cut(s)	165, 210
EcoRV	GATATC	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	2 cut(s)	142, 427
FaiI	YATR	3 cut(s)	140, 240, 425
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	2 cut(s)	138, 423
FauI	CCCGC	3 cut(s)	23, 72, 170
Fnu4HI	GCNGC	2 cut(s)	378, 381
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	2 cut(s)	378, 381
FspBI	CTAG	1 cut(s)	30
FspI	TGCGCA	1 cut(s)	149
GlaI	GCGC	7 cut(s)	63, 94, 96, 118, 149, 176, 376
GluI	GCNGC	2 cut(s)	378, 381
HaeIII	GGCC	1 cut(s)	365
HapII	CCGG	1 cut(s)	143
HgaI	GACGC	1 cut(s)	7
HhaI	GCGC	7 cut(s)	64, 95, 97, 119, 150, 177, 377
Hin1II	CATG	2 cut(s)	142, 427
Hin6I	GCGC	7 cut(s)	62, 93, 95, 117, 148, 175, 375
HinP1I	GCGC	7 cut(s)	62, 93, 95, 117, 148, 175, 375
HincII	GTYRAC	2 cut(s)	268, 283
HindII	GTYRAC	2 cut(s)	268, 283
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	4 cut(s)	13, 49, 244, 307
Hpy166II	GTNNAC	3 cut(s)	268, 283, 408
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	2 cut(s)	194, 325
Hpy8I	GTNNAC	3 cut(s)	268, 283, 408
Hpy99I	CGWCG	3 cut(s)	70, 161, 290
HpyAV	CCTTC	3 cut(s)	191, 256, 298
HpyCH4III	ACNGT	2 cut(s)	272, 280
HpyCH4IV	ACGT	2 cut(s)	285, 432
HpyCH4V	TGCA	1 cut(s)	427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
HpyF3I	CTNAG	3 cut(s)	106, 323, 414
HpySE526I	ACGT	2 cut(s)	285, 432
Hsp92II	CATG	2 cut(s)	142, 427
HspAI	GCGC	7 cut(s)	62, 93, 95, 117, 148, 175, 375
Kzo9I	GATC	2 cut(s)	134, 327
LpnPI	CCDG	8 cut(s)	37, 152, 156, 179, 197, 224, 268, 310
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	1 cut(s)	300
MaeI	CTAG	1 cut(s)	30
MaeII	ACGT	2 cut(s)	285, 432
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	2 cut(s)	136, 329
MboI	GATC	2 cut(s)	134, 327
MboII	GAAGA	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	401
MnlI	CCTC	6 cut(s)	69, 110, 115, 122, 154, 409
MslI	CAYNNNNRTG	1 cut(s)	143
MspA1I	CMGCKG	2 cut(s)	380, 413
MspI	CCGG	1 cut(s)	143
MspR9I	CCNGG	2 cut(s)	167, 212
MvaI	CCWGG	2 cut(s)	167, 212
MvnI	CGCG	7 cut(s)	18, 62, 95, 117, 177, 195, 375
MwoI	GCNNNNNNNGC	1 cut(s)	24
NdeII	GATC	2 cut(s)	134, 327
NlaIII	CATG	2 cut(s)	142, 427
NlaIV	GGNNCC	3 cut(s)	181, 274, 400
NmuCI	GTSAC	1 cut(s)	19
NruI	TCGCGA	1 cut(s)	195
NsbI	TGCGCA	1 cut(s)	149
PauI	GCGCGC	1 cut(s)	93
PflFI	GACNNNGTC	1 cut(s)	161
PkrI	GCNGC	2 cut(s)	379, 382
PpuMI	RGGWCCY	1 cut(s)	180
Psp1406I	AACGTT	1 cut(s)	432
Psp5II	RGGWCCY	1 cut(s)	180
Psp6I	CCWGG	2 cut(s)	165, 210
PspGI	CCWGG	2 cut(s)	165, 210
PspN4I	GGNNCC	3 cut(s)	181, 274, 400
PspPI	GGNCC	3 cut(s)	163, 180, 337
PspPPI	RGGWCCY	1 cut(s)	180
PsyI	GACNNNGTC	1 cut(s)	161
PteI	GCGCGC	1 cut(s)	93
PvuII	CAGCTG	1 cut(s)	413
RruI	TCGCGA	1 cut(s)	195
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
RseI	CAYNNNNRTG	1 cut(s)	143
SatI	GCNGC	2 cut(s)	378, 381
Sau3AI	GATC	2 cut(s)	134, 327
Sau96I	GGNCC	3 cut(s)	163, 180, 337
ScrFI	CCNGG	2 cut(s)	167, 212
SduI	GDGCHC	1 cut(s)	401
SfaNI	GCATC	1 cut(s)	300
SinI	GGWCC	3 cut(s)	163, 180, 337
SmiMI	CAYNNNNRTG	1 cut(s)	143
SspMI	CTAG	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	165, 210
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	2 cut(s)	272, 280
TaiI	ACGT	2 cut(s)	288, 435
TaqI	TCGA	5 cut(s)	68, 243, 302, 330, 354
TatI	WGTACW	1 cut(s)	6
TauI	GCSGC	1 cut(s)	380
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	1 cut(s)	380
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	161
VpaK11BI	GGWCC	3 cut(s)	163, 180, 337
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.