Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002325

Physical Location & Seq

Genomic Coordinates Forward (+)

73316143 .. 73316583

Gene Structure 441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00135780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAAGAGGAACCCACGCGTCTCGAGCTCCAGGCGCAAGAGCCGCAAGGCCCACTTCACGGCGCCGTCGAGCGTCCGCCGCGTCCTGATGAGCGCGCCGCTCTCGTCCGACCTCCGGTCGAAGTACAACGTCCGGTCCATGCCGGTGCGCAAGGACGACGAGGTCCAGGTGGTGCGTGGGACCTACAAGGGCCGGGAGGGCAAGGTGGTCCAGGTCTACCGCCGCAAGTGGGTCATCCACATCGAGCGGATCACCCGCGAGAAGGTCAACGGATCCACGGTCAACGTCGGAATCAACCCCTCCAAGGTCCTCATCACCAAGCTCAGGTTGGACAAGGACCGCAAGTCGCTGCTGGACCGCAAGGCCAAGGGAAGAGCCGCCGCCGATAAGGACAAAGGCACCAAGTTCACGGCGGAGGACATCATGCAGAACGTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L26

Protein Analysis

146

Amino Acids

16.73

Weight (kDa)

11.14

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L26	PF16906	8 - 121	1.7e-37	Ribosomal proteins L26 eukaryotic, L24P archaeal
KOW	PF00467	51 - 82	1.6e-08	KOW motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49910 AT5G67510
fragaria_vesca	FvH4_1g17640 FvH4_5g24274 FvH4_6g36980
malus_domestica	MD02G1185200.v1.1 MD06G1158400.v1.1 MD12G1060600.v1.1 MD12G1243600.v1.1 MD14G1120400.v1.1 MD16G1170200.v1.1
prunus_persica	Prupe.3G002900_v2.0.a1 Prupe.6G221600_v2.0.a1
pyrus_communis	pycom02g15010 pycom06g14140 pycom14g13750
rosa_chinensis	RchiOBHm_Chr2g0107961 RchiOBHm_Chr2g0110121 RchiOBHm_Chr2g0149501
rosa_laevigata	RLG00000017629 RLG00000020414
rosa_multiflora	Rmu_sc0001484.1_g000030 Rmu_sc0005278.1_g000014 Rmu_sc0006867.1_g000007 Rmu_sc0008619.1_g000004
rosa_roxburghii	Rroxscaffold_2G00094390 Rroxscaffold_2G00098050 Rroxscaffold_2G00135780
rosa_rugosa	Rorug02G0149000 Rorug02G0412000 Rorug04G0124600
rosa_samantha	Rh2AG198300 Rh2AG472100 Rh2BG211100 Rh2BG484200 Rh2CG202900 Rh2CG219800 Rh2CG458000 Rh2DG205900 Rh2DG493400
rosa_wichuraiana	Rw2G015730 Rw2G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
Acc16I	TGCGCA	1 cut(s)	149
AccB1I	GGYRCC	2 cut(s)	61, 398
AccBSI	CCGCTC	2 cut(s)	100, 247
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	4 cut(s)	18, 81, 95, 258
AclWI	GGATC	3 cut(s)	257, 267, 280
AcyI	GRCGYC	1 cut(s)	62
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	6 cut(s)	58, 114, 229, 262, 304, 324
AflIII	ACRYGT	1 cut(s)	16
AhdI	GACNNNNNGTC	2 cut(s)	115, 343
AjnI	CCWGG	3 cut(s)	29, 165, 210
AluBI	AGCT	2 cut(s)	27, 322
AluI	AGCT	2 cut(s)	27, 322
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	3 cut(s)	257, 267, 280
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	3 cut(s)	48, 190, 363
ApeKI	GCWGC	1 cut(s)	349
AspLEI	GCGC	5 cut(s)	36, 64, 95, 97, 150
AspS9I	GGNCC	9 cut(s)	49, 135, 163, 180, 190, 208, 307, 337, 355
AsuC2I	CCSGG	1 cut(s)	194
AsuHPI	GGTGA	2 cut(s)	244, 307
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	7 cut(s)	135, 163, 180, 208, 307, 337, 355
BamHI	GGATCC	1 cut(s)	272
BanI	GGYRCC	2 cut(s)	61, 398
BanII	GRGCYC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	336
BceAI	ACGGC	3 cut(s)	49, 75, 426
BciT130I	CCWGG	3 cut(s)	31, 167, 212
BcnI	CCSGG	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	25
BfoI	RGCGCY	1 cut(s)	65
BglI	GCCNNNNNGGC	1 cut(s)	198
BisI	GCNGC	7 cut(s)	43, 79, 98, 223, 350, 378, 381
BlsI	GCNGC	7 cut(s)	44, 80, 99, 224, 351, 379, 382
Bme1390I	CCNGG	4 cut(s)	31, 167, 194, 212
Bme18I	GGWCC	7 cut(s)	135, 163, 180, 208, 307, 337, 355
BmeRI	GACNNNNNGTC	2 cut(s)	115, 343
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	9 cut(s)	49, 135, 163, 180, 190, 208, 307, 337, 355
BmiI	GGNNCC	5 cut(s)	11, 63, 181, 274, 400
BmrFI	CCNGG	4 cut(s)	31, 167, 194, 212
BpmI	CTGGAG	1 cut(s)	13
Bpu10I	CCTNAGC	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	62
BsaJI	CCNNGG	3 cut(s)	276, 303, 366
BsaWI	WCCGGW	2 cut(s)	114, 132
Bsc4I	CCNNNNNNNGG	6 cut(s)	58, 114, 229, 262, 304, 324
Bse118I	RCCGGY	1 cut(s)	142
BseBI	CCWGG	3 cut(s)	31, 167, 212
BseDI	CCNNGG	3 cut(s)	276, 303, 366
BseGI	GGATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	6 cut(s)	58, 114, 229, 262, 304, 324
BseMII	CTCAG	1 cut(s)	337
BsePI	GCGCGC	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	336
Bsh1236I	CGCG	4 cut(s)	18, 81, 95, 258
Bsh1285I	CGRYCG	1 cut(s)	119
BshFI	GGCC	3 cut(s)	50, 192, 365
BshNI	GGYRCC	2 cut(s)	61, 398
BsiEI	CGRYCG	1 cut(s)	119
BsiHKAI	GWGCWC	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	4 cut(s)	115, 133, 143, 193
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	6 cut(s)	58, 114, 229, 262, 304, 324
BsmAI	GTCTC	1 cut(s)	25
BsmBI	CGTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	3 cut(s)	50, 192, 365
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	2 cut(s)	249, 272
BspANI	GGCC	3 cut(s)	50, 192, 365
BspCNI	CTCAG	1 cut(s)	336
BspFNI	CGCG	4 cut(s)	18, 81, 95, 258
BspLI	GGNNCC	5 cut(s)	11, 63, 181, 274, 400
BspPI	GGATC	3 cut(s)	257, 267, 280
BspQI	GCTCTTC	1 cut(s)	367
BspT107I	GGYRCC	2 cut(s)	61, 398
BsrBI	CCGCTC	2 cut(s)	100, 247
BsrFI	RCCGGY	1 cut(s)	142
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	3 cut(s)	276, 303, 366
BssHII	GCGCGC	1 cut(s)	93
BssMI	GATC	2 cut(s)	249, 272
BssNI	GRCGYC	1 cut(s)	62
BssT1I	CCWWGG	2 cut(s)	303, 366
Bst2UI	CCWGG	3 cut(s)	31, 167, 212
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	367
BstACI	GRCGYC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	323
BstDSI	CCRYGG	1 cut(s)	276
BstF5I	GGATG	1 cut(s)	234
BstFNI	CGCG	4 cut(s)	18, 81, 95, 258
BstH2I	RGCGCY	1 cut(s)	65
BstHHI	GCGC	5 cut(s)	36, 64, 95, 97, 150
BstKTI	GATC	2 cut(s)	252, 275
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	2 cut(s)	249, 272
BstMCI	CGRYCG	1 cut(s)	119
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 33, 42, 78, 198
BstNI	CCWGG	3 cut(s)	31, 167, 212
BstSCI	CCNGG	4 cut(s)	29, 165, 192, 210
BstUI	CGCG	4 cut(s)	18, 81, 95, 258
BstV1I	GCAGC	1 cut(s)	336
BstX2I	RGATCY	1 cut(s)	272
BstYI	RGATCY	1 cut(s)	272
BsuRI	GGCC	3 cut(s)	50, 192, 365
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	95
CfoI	GCGC	5 cut(s)	36, 64, 95, 97, 150
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	9 cut(s)	49, 135, 163, 180, 190, 208, 307, 337, 355
CseI	GACGC	3 cut(s)	7, 61, 70
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	2 cut(s)	139, 424
CviJI	RGCY	7 cut(s)	27, 42, 50, 192, 322, 365, 377
CviKI_1	RGCY	7 cut(s)	27, 42, 50, 192, 322, 365, 377
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	1 cut(s)	323
DinI	GGCGCC	1 cut(s)	63
DpnI	GATC	2 cut(s)	251, 274
DpnII	GATC	2 cut(s)	249, 272
DrdI	GACNNNNNNGTC	1 cut(s)	161
DriI	GACNNNNNGTC	2 cut(s)	115, 343
DseDI	GACNNNNNNGTC	1 cut(s)	161
Eam1104I	CTCTTC	1 cut(s)	367
Eam1105I	GACNNNNNGTC	2 cut(s)	115, 343
EarI	CTCTTC	1 cut(s)	367
EciI	GGCGGA	2 cut(s)	65, 428
Ecl136II	GAGCTC	1 cut(s)	27
Eco130I	CCWWGG	2 cut(s)	303, 366
Eco24I	GRGCYC	1 cut(s)	29
Eco47I	GGWCC	7 cut(s)	135, 163, 180, 208, 307, 337, 355
Eco53kI	GAGCTC	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	27
EcoO109I	RGGNCCY	2 cut(s)	180, 307
EcoRII	CCWGG	3 cut(s)	29, 165, 210
EcoT14I	CCWWGG	2 cut(s)	303, 366
EcoT38I	GRGCYC	1 cut(s)	29
EgeI	GGCGCC	1 cut(s)	63
EheI	GGCGCC	1 cut(s)	63
ErhI	CCWWGG	2 cut(s)	303, 366
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	2 cut(s)	142, 427
FaiI	YATR	2 cut(s)	140, 425
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	2 cut(s)	138, 423
FauI	CCCGC	1 cut(s)	263
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	7 cut(s)	43, 79, 98, 223, 350, 378, 381
FokI	GGATG	1 cut(s)	221
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	7 cut(s)	43, 79, 98, 223, 350, 378, 381
FspI	TGCGCA	1 cut(s)	149
GlaI	GCGC	5 cut(s)	35, 63, 94, 96, 149
GluI	GCNGC	7 cut(s)	43, 79, 98, 223, 350, 378, 381
GsuI	CTGGAG	1 cut(s)	13
HaeII	RGCGCY	1 cut(s)	65
HaeIII	GGCC	3 cut(s)	50, 192, 365
HapII	CCGG	4 cut(s)	115, 133, 143, 193
HgaI	GACGC	3 cut(s)	7, 61, 70
HhaI	GCGC	5 cut(s)	36, 64, 95, 97, 150
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	2 cut(s)	142, 427
Hin6I	GCGC	5 cut(s)	34, 62, 93, 95, 148
HinP1I	GCGC	5 cut(s)	34, 62, 93, 95, 148
HincII	GTYRAC	2 cut(s)	268, 283
HindII	GTYRAC	2 cut(s)	268, 283
HinfI	GANTC	1 cut(s)	291
HpaII	CCGG	4 cut(s)	115, 133, 143, 193
HphI	GGTGA	2 cut(s)	244, 307
Hpy166II	GTNNAC	4 cut(s)	217, 268, 283, 408
Hpy188I	TCNGA	2 cut(s)	109, 290
Hpy188III	TCNNGA	2 cut(s)	22, 85
Hpy8I	GTNNAC	4 cut(s)	217, 268, 283, 408
Hpy99I	CGWCG	3 cut(s)	70, 161, 290
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	3 cut(s)	129, 285, 432
HpyCH4V	TGCA	1 cut(s)	427
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 33, 42, 78, 198
HpyF3I	CTNAG	1 cut(s)	323
HpySE526I	ACGT	3 cut(s)	129, 285, 432
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	2 cut(s)	142, 427
HspAI	GCGC	5 cut(s)	34, 62, 93, 95, 148
KasI	GGCGCC	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	249, 272
LguI	GCTCTTC	1 cut(s)	367
LmnI	GCTCC	1 cut(s)	32
Lsp1109I	GCAGC	1 cut(s)	336
MaeII	ACGT	3 cut(s)	129, 285, 432
MalI	GATC	2 cut(s)	251, 274
MbiI	CCGCTC	2 cut(s)	100, 247
MboI	GATC	2 cut(s)	249, 272
MboII	GAAGA	2 cut(s)	16, 384
MflI	RGATCY	1 cut(s)	272
MhlI	GDGCHC	1 cut(s)	29
MluI	ACGCGT	1 cut(s)	16
Mly113I	GGCGCC	1 cut(s)	62
MmeI	TCCRAC	3 cut(s)	132, 268, 309
MnlI	CCTC	6 cut(s)	122, 154, 190, 310, 320, 409
MslI	CAYNNNNRTG	1 cut(s)	143
MspI	CCGG	4 cut(s)	115, 133, 143, 193
MspR9I	CCNGG	4 cut(s)	31, 167, 194, 212
MvaI	CCWGG	3 cut(s)	31, 167, 212
MvnI	CGCG	4 cut(s)	18, 81, 95, 258
MwoI	GCNNNNNNNGC	5 cut(s)	24, 33, 42, 78, 198
NarI	GGCGCC	1 cut(s)	62
NciI	CCSGG	1 cut(s)	194
NdeII	GATC	2 cut(s)	249, 272
NlaIII	CATG	2 cut(s)	142, 427
NlaIV	GGNNCC	5 cut(s)	11, 63, 181, 274, 400
NsbI	TGCGCA	1 cut(s)	149
PaeR7I	CTCGAG	1 cut(s)	22
PauI	GCGCGC	1 cut(s)	93
PciSI	GCTCTTC	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	291
PflFI	GACNNNGTC	1 cut(s)	161
PkrI	GCNGC	7 cut(s)	44, 80, 99, 224, 351, 379, 382
PluTI	GGCGCC	1 cut(s)	65
PpuMI	RGGWCCY	2 cut(s)	180, 307
Psp124BI	GAGCTC	1 cut(s)	29
Psp5II	RGGWCCY	2 cut(s)	180, 307
Psp6I	CCWGG	3 cut(s)	29, 165, 210
PspGI	CCWGG	3 cut(s)	29, 165, 210
PspN4I	GGNNCC	5 cut(s)	11, 63, 181, 274, 400
PspPI	GGNCC	9 cut(s)	49, 135, 163, 180, 190, 208, 307, 337, 355
PspPPI	RGGWCCY	2 cut(s)	180, 307
PsuI	RGATCY	1 cut(s)	272
PsyI	GACNNNGTC	1 cut(s)	161
PteI	GCGCGC	1 cut(s)	93
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	143
SacI	GAGCTC	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	367
SatI	GCNGC	7 cut(s)	43, 79, 98, 223, 350, 378, 381
Sau3AI	GATC	2 cut(s)	249, 272
Sau96I	GGNCC	9 cut(s)	49, 135, 163, 180, 190, 208, 307, 337, 355
ScrFI	CCNGG	4 cut(s)	31, 167, 194, 212
SduI	GDGCHC	1 cut(s)	29
SfoI	GGCGCC	1 cut(s)	63
Sfr274I	CTCGAG	1 cut(s)	22
SinI	GGWCC	7 cut(s)	135, 163, 180, 208, 307, 337, 355
SlaI	CTCGAG	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
SspDI	GGCGCC	1 cut(s)	61
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	4 cut(s)	29, 165, 192, 210
StyI	CCWWGG	2 cut(s)	303, 366
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	3 cut(s)	132, 288, 435
TaqI	TCGA	4 cut(s)	23, 68, 119, 243
TatI	WGTACW	1 cut(s)	123
TauI	GCSGC	6 cut(s)	45, 81, 100, 225, 380, 383
TfiI	GAWTC	1 cut(s)	291
TseI	GCWGC	1 cut(s)	349
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	285
Tth111I	GACNNNGTC	1 cut(s)	161
VpaK11BI	GGWCC	7 cut(s)	135, 163, 180, 208, 307, 337, 355
XcmI	CCANNNNNNNNNTGG	2 cut(s)	173, 325
XhoI	CTCGAG	1 cut(s)	22
XmiI	GTMKAC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.