Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002325

Physical Location & Seq

Genomic Coordinates Reverse (-)

19003836 .. 19004276

Gene Structure 441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g14140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAAGTATAATCCCCGCGTCACCAGCTCCCGCCGGAAGAACCGCAAGGCTCACTTCACGGCGCCGTCCAGCGTGCGCCGCGTGCTGATGAGCGCGCCTCTCTCCACCGACCTCCGCTCCAAGTACAACGTCCGATCGATGCCGGTGCGCAAGGACGACGAGGTCCAGGTCGTGCGTGGGACCTATAAGGGCCGCGAGGGCAAGGTCGTGCAGGTGTACCGCCGCAAGTGGGTCATCCACATCGAGCGGATCACCCGGGAGAAGGTGAACGGGTCCACCGTCAATGTTGGCATCAACCCCTCCAAGGTCGTCATCACCAAGCTCCGCCTCGACAAGGACCGCAAGTCTCTGCTCGACCGCAAGGCCAAGGGCCGAGCCGCCGCTGACAAGGACAAGGGCACCAAGTTCACCGCAGAGGATATCATGCAGAACGTCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L26

Protein Analysis

147

Amino Acids

16.78

Weight (kDa)

10.91

Isoelectric Point (pI)

35.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L26	PF16906	8 - 121	5.6e-38	Ribosomal proteins L26 eukaryotic, L24P archaeal
KOW	PF00467	51 - 82	1.6e-08	KOW motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49910 AT5G67510
fragaria_vesca	FvH4_1g17640 FvH4_5g24274 FvH4_6g36980
malus_domestica	MD02G1185200.v1.1 MD06G1158400.v1.1 MD12G1060600.v1.1 MD12G1243600.v1.1 MD14G1120400.v1.1 MD16G1170200.v1.1
prunus_persica	Prupe.3G002900_v2.0.a1 Prupe.6G221600_v2.0.a1
pyrus_communis	pycom02g15010 pycom06g14140 pycom14g13750
rosa_chinensis	RchiOBHm_Chr2g0107961 RchiOBHm_Chr2g0110121 RchiOBHm_Chr2g0149501
rosa_laevigata	RLG00000017629 RLG00000020414
rosa_multiflora	Rmu_sc0001484.1_g000030 Rmu_sc0005278.1_g000014 Rmu_sc0006867.1_g000007 Rmu_sc0008619.1_g000004
rosa_roxburghii	Rroxscaffold_2G00094390 Rroxscaffold_2G00098050 Rroxscaffold_2G00135780
rosa_rugosa	Rorug02G0149000 Rorug02G0412000 Rorug04G0124600
rosa_samantha	Rh2AG198300 Rh2AG472100 Rh2BG211100 Rh2BG484200 Rh2CG202900 Rh2CG219800 Rh2CG458000 Rh2DG205900 Rh2DG493400
rosa_wichuraiana	Rw2G015730 Rw2G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	202
AasI	GACNNNNNNGTC	1 cut(s)	161
Acc16I	TGCGCA	1 cut(s)	149
Acc36I	ACCTGC	1 cut(s)	202
AccB1I	GGYRCC	2 cut(s)	61, 398
AccBSI	CCGCTC	2 cut(s)	117, 247
AccII	CGCG	4 cut(s)	18, 81, 95, 195
AclWI	GGATC	1 cut(s)	257
AcyI	GRCGYC	1 cut(s)	62
AfaI	GTAC	2 cut(s)	125, 218
AfiI	CCNNNNNNNGG	4 cut(s)	229, 262, 304, 334
AhdI	GACNNNNNGTC	1 cut(s)	343
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	2 cut(s)	27, 322
AluI	AGCT	2 cut(s)	27, 322
Alw26I	GTCTC	1 cut(s)	351
AlwI	GGATC	1 cut(s)	257
Ama87I	CYCGRG	1 cut(s)	255
AoxI	GGCC	3 cut(s)	190, 363, 370
AspLEI	GCGC	5 cut(s)	64, 78, 95, 97, 150
AspS9I	GGNCC	6 cut(s)	163, 180, 190, 273, 337, 370
AsuC2I	CCSGG	2 cut(s)	256, 257
AsuHPI	GGTGA	5 cut(s)	13, 244, 277, 307, 400
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	4 cut(s)	163, 180, 273, 337
BaeGI	GKGCMC	1 cut(s)	401
BanI	GGYRCC	2 cut(s)	61, 398
BceAI	ACGGC	2 cut(s)	49, 75
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BciT130I	CCWGG	1 cut(s)	167
BcnI	CCSGG	2 cut(s)	256, 257
BcoDI	GTCTC	1 cut(s)	351
BfoI	RGCGCY	1 cut(s)	65
BfuAI	ACCTGC	1 cut(s)	202
BglI	GCCNNNNNGGC	1 cut(s)	198
BisI	GCNGC	5 cut(s)	79, 193, 223, 378, 381
BlsI	GCNGC	5 cut(s)	80, 194, 224, 379, 382
Bme1390I	CCNGG	3 cut(s)	167, 256, 257
Bme18I	GGWCC	4 cut(s)	163, 180, 273, 337
BmeRI	GACNNNNNGTC	1 cut(s)	343
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	6 cut(s)	163, 180, 190, 273, 337, 370
BmiI	GGNNCC	4 cut(s)	63, 181, 274, 400
BmrFI	CCNGG	3 cut(s)	167, 256, 257
BmsI	GCATC	2 cut(s)	129, 300
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
BpuMI	CCSGG	2 cut(s)	256, 257
Bsa29I	ATCGAT	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	62
BsaJI	CCNNGG	3 cut(s)	255, 303, 366
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	4 cut(s)	229, 262, 304, 334
Bse118I	RCCGGY	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	167
BseCI	ATCGAT	1 cut(s)	137
BseDI	CCNNGG	3 cut(s)	255, 303, 366
BseGI	GGATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	4 cut(s)	229, 262, 304, 334
BsePI	GCGCGC	1 cut(s)	93
BseSI	GKGCMC	1 cut(s)	401
BsgI	GTGCAG	1 cut(s)	230
Bsh1236I	CGCG	4 cut(s)	18, 81, 95, 195
Bsh1285I	CGRYCG	2 cut(s)	137, 358
BshFI	GGCC	3 cut(s)	192, 365, 372
BshNI	GGYRCC	2 cut(s)	61, 398
BshVI	ATCGAT	1 cut(s)	137
BsiEI	CGRYCG	2 cut(s)	137, 358
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	3 cut(s)	34, 143, 256
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	4 cut(s)	229, 262, 304, 334
BsmAI	GTCTC	1 cut(s)	351
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	3 cut(s)	192, 365, 372
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp143I	GATC	2 cut(s)	134, 249
BspANI	GGCC	3 cut(s)	192, 365, 372
BspDI	ATCGAT	1 cut(s)	137
BspFNI	CGCG	4 cut(s)	18, 81, 95, 195
BspLI	GGNNCC	4 cut(s)	63, 181, 274, 400
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	1 cut(s)	257
BspT107I	GGYRCC	2 cut(s)	61, 398
BsrBI	CCGCTC	2 cut(s)	117, 247
BsrFI	RCCGGY	1 cut(s)	142
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	3 cut(s)	255, 303, 366
BssHII	GCGCGC	1 cut(s)	93
BssMI	GATC	2 cut(s)	134, 249
BssNI	GRCGYC	1 cut(s)	62
BssT1I	CCWWGG	2 cut(s)	303, 366
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	280
BstACI	GRCGYC	1 cut(s)	62
BstC8I	GCNNGC	3 cut(s)	74, 83, 95
BstENI	CCTNNNNNAGG	1 cut(s)	332
BstF5I	GGATG	1 cut(s)	234
BstFNI	CGCG	4 cut(s)	18, 81, 95, 195
BstH2I	RGCGCY	1 cut(s)	65
BstHHI	GCGC	5 cut(s)	64, 78, 95, 97, 150
BstKTI	GATC	2 cut(s)	137, 252
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	2 cut(s)	134, 249
BstMCI	CGRYCG	2 cut(s)	137, 358
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 78, 82, 198
BstNI	CCWGG	1 cut(s)	167
BstSCI	CCNGG	3 cut(s)	165, 254, 255
BstSLI	GKGCMC	1 cut(s)	401
BstUI	CGCG	4 cut(s)	18, 81, 95, 195
Bsu15I	ATCGAT	1 cut(s)	137
BsuRI	GGCC	3 cut(s)	192, 365, 372
BsuTUI	ATCGAT	1 cut(s)	137
BtsCI	GGATG	1 cut(s)	234
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	3 cut(s)	74, 83, 95
CfoI	GCGC	5 cut(s)	64, 78, 95, 97, 150
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	6 cut(s)	163, 180, 190, 273, 337, 370
Cfr9I	CCCGGG	1 cut(s)	255
ClaI	ATCGAT	1 cut(s)	137
CseI	GACGC	1 cut(s)	7
Csp6I	GTAC	2 cut(s)	124, 217
CviAII	CATG	1 cut(s)	424
CviJI	RGCY	7 cut(s)	27, 50, 192, 322, 365, 372, 377
CviKI_1	RGCY	7 cut(s)	27, 50, 192, 322, 365, 372, 377
CviQI	GTAC	2 cut(s)	124, 217
DinI	GGCGCC	1 cut(s)	63
DpnI	GATC	2 cut(s)	136, 251
DpnII	GATC	2 cut(s)	134, 249
DrdI	GACNNNNNNGTC	1 cut(s)	161
DriI	GACNNNNNGTC	1 cut(s)	343
DseDI	GACNNNNNNGTC	1 cut(s)	161
Eam1105I	GACNNNNNGTC	1 cut(s)	343
EciI	GGCGGA	1 cut(s)	314
Eco130I	CCWWGG	2 cut(s)	303, 366
Eco32I	GATATC	1 cut(s)	421
Eco47I	GGWCC	4 cut(s)	163, 180, 273, 337
Eco88I	CYCGRG	1 cut(s)	255
EcoNI	CCTNNNNNAGG	1 cut(s)	332
EcoO109I	RGGNCCY	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	165
EcoRV	GATATC	1 cut(s)	421
EcoT14I	CCWWGG	2 cut(s)	303, 366
EgeI	GGCGCC	1 cut(s)	63
EheI	GGCGCC	1 cut(s)	63
ErhI	CCWWGG	2 cut(s)	303, 366
FaeI	CATG	1 cut(s)	427
FaiI	YATR	3 cut(s)	9, 186, 425
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	1 cut(s)	423
FauI	CCCGC	2 cut(s)	23, 38
Fnu4HI	GCNGC	5 cut(s)	79, 193, 223, 378, 381
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	5 cut(s)	79, 193, 223, 378, 381
FspI	TGCGCA	1 cut(s)	149
GlaI	GCGC	5 cut(s)	63, 77, 94, 96, 149
GluI	GCNGC	5 cut(s)	79, 193, 223, 378, 381
HaeII	RGCGCY	1 cut(s)	65
HaeIII	GGCC	3 cut(s)	192, 365, 372
HapII	CCGG	3 cut(s)	34, 143, 256
HgaI	GACGC	1 cut(s)	7
HhaI	GCGC	5 cut(s)	64, 78, 95, 97, 150
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	1 cut(s)	427
Hin6I	GCGC	5 cut(s)	62, 76, 93, 95, 148
HinP1I	GCGC	5 cut(s)	62, 76, 93, 95, 148
HpaII	CCGG	3 cut(s)	34, 143, 256
HphI	GGTGA	5 cut(s)	13, 244, 277, 307, 400
Hpy166II	GTNNAC	4 cut(s)	217, 268, 276, 408
Hpy188I	TCNGA	1 cut(s)	134
Hpy8I	GTNNAC	4 cut(s)	217, 268, 276, 408
Hpy99I	CGWCG	2 cut(s)	161, 437
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	2 cut(s)	129, 432
HpyCH4V	TGCA	2 cut(s)	211, 427
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 78, 82, 198
HpySE526I	ACGT	2 cut(s)	129, 432
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	1 cut(s)	427
HspAI	GCGC	5 cut(s)	62, 76, 93, 95, 148
KasI	GGCGCC	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	134, 249
LmnI	GCTCC	3 cut(s)	32, 122, 327
LpnPI	CCDG	8 cut(s)	37, 47, 82, 152, 156, 179, 197, 269
LweI	GCATC	2 cut(s)	129, 300
MaeII	ACGT	2 cut(s)	129, 432
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	2 cut(s)	136, 251
MbiI	CCGCTC	2 cut(s)	117, 247
MboI	GATC	2 cut(s)	134, 249
MboII	GAAGA	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	401
Mly113I	GGCGCC	1 cut(s)	62
MnlI	CCTC	7 cut(s)	108, 122, 154, 190, 310, 338, 409
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	3 cut(s)	34, 143, 256
MspR9I	CCNGG	3 cut(s)	167, 256, 257
MvaI	CCWGG	1 cut(s)	167
MvnI	CGCG	4 cut(s)	18, 81, 95, 195
MwoI	GCNNNNNNNGC	4 cut(s)	24, 78, 82, 198
NarI	GGCGCC	1 cut(s)	62
NciI	CCSGG	2 cut(s)	256, 257
NdeII	GATC	2 cut(s)	134, 249
NlaIII	CATG	1 cut(s)	427
NlaIV	GGNNCC	4 cut(s)	63, 181, 274, 400
NmeAIII	GCCGAG	1 cut(s)	398
NmuCI	GTSAC	1 cut(s)	19
NsbI	TGCGCA	1 cut(s)	149
PaqCI	CACCTGC	1 cut(s)	202
PauI	GCGCGC	1 cut(s)	93
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PflFI	GACNNNGTC	1 cut(s)	161
PkrI	GCNGC	5 cut(s)	80, 194, 224, 379, 382
Ple19I	CGATCG	1 cut(s)	137
PluTI	GGCGCC	1 cut(s)	65
PpuMI	RGGWCCY	1 cut(s)	180
Psp5II	RGGWCCY	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	4 cut(s)	63, 181, 274, 400
PspPI	GGNCC	6 cut(s)	163, 180, 190, 273, 337, 370
PspPPI	RGGWCCY	1 cut(s)	180
PsyI	GACNNNGTC	1 cut(s)	161
PteI	GCGCGC	1 cut(s)	93
PvuI	CGATCG	1 cut(s)	137
RsaI	GTAC	2 cut(s)	125, 218
RsaNI	GTAC	2 cut(s)	124, 217
SatI	GCNGC	5 cut(s)	79, 193, 223, 378, 381
Sau3AI	GATC	2 cut(s)	134, 249
Sau96I	GGNCC	6 cut(s)	163, 180, 190, 273, 337, 370
ScrFI	CCNGG	3 cut(s)	167, 256, 257
SduI	GDGCHC	1 cut(s)	401
SfaNI	GCATC	2 cut(s)	129, 300
SfoI	GGCGCC	1 cut(s)	63
SinI	GGWCC	4 cut(s)	163, 180, 273, 337
SmaI	CCCGGG	1 cut(s)	257
SspDI	GGCGCC	1 cut(s)	61
StyD4I	CCNGG	3 cut(s)	165, 254, 255
StyI	CCWWGG	2 cut(s)	303, 366
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	2 cut(s)	132, 435
TaqI	TCGA	5 cut(s)	137, 243, 330, 354, 435
TatI	WGTACW	1 cut(s)	123
TauI	GCSGC	5 cut(s)	81, 195, 225, 380, 383
TseFI	GTSAC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	255
Tth111I	GACNNNGTC	1 cut(s)	161
VpaK11BI	GGWCC	4 cut(s)	163, 180, 273, 337
XagI	CCTNNNNNAGG	1 cut(s)	332
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
XmaI	CCCGGG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.