Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002325

Physical Location & Seq

Genomic Coordinates Reverse (-)

26937621 .. 26938498

Gene Structure 878 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G67510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAAGTTCAATCCGCGTGTGAGCTCTTCTCGCCGGAAGAACAGGAAGGCTCACTTCACAGCTCCTTCAAGCGTGAGGCGCGTTCTCATGAGCTCGCCGTTATCCAAGGATCTCCGTAACAAACACAACGTCAGATCCATGCCGATTCGTAAAGACGACGAAGTGCAAGTTGTTCGTGGGACGTTCAAGGGAAGAGAAGGGAAGGTGATGCAGGTGTATCGCCGCAAGTGGGTGATTCACATCGAGAGAATCACAAGGGAGAAAGTCAACGGATCCACGGTCAACGTCGGAGTCAATGCTTCGAATGTGATGATCACTAAGCTCCGTCTCGATAAGGATAGGAAGTCGCTTTTGGAGCGTAAGGCTAATGGACGCGCCGCCGCCGATAAGGAGAAGGGAACCAAGTTTTCAGCCGAAGATGTCATGGAGAACGTAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L26

Protein Analysis

146

Amino Acids

16.79

Weight (kDa)

11.13

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L26	PF16906	8 - 121	2.1e-37	Ribosomal proteins L26 eukaryotic, L24P archaeal
KOW4_SPT5	PF23291	48 - 75	7.9e-06	Transcription elongation factor SPT5, fourth KOW domain
KOW	PF00467	51 - 82	2.6e-08	KOW motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49910 AT5G67510
fragaria_vesca	FvH4_1g17640 FvH4_5g24274 FvH4_6g36980
malus_domestica	MD02G1185200.v1.1 MD06G1158400.v1.1 MD12G1060600.v1.1 MD12G1243600.v1.1 MD14G1120400.v1.1 MD16G1170200.v1.1
prunus_persica	Prupe.3G002900_v2.0.a1 Prupe.6G221600_v2.0.a1
pyrus_communis	pycom02g15010 pycom06g14140 pycom14g13750
rosa_chinensis	RchiOBHm_Chr2g0107961 RchiOBHm_Chr2g0110121 RchiOBHm_Chr2g0149501
rosa_laevigata	RLG00000017629 RLG00000020414
rosa_multiflora	Rmu_sc0001484.1_g000030 Rmu_sc0005278.1_g000014 Rmu_sc0006867.1_g000007 Rmu_sc0008619.1_g000004
rosa_roxburghii	Rroxscaffold_2G00094390 Rroxscaffold_2G00098050 Rroxscaffold_2G00135780
rosa_rugosa	Rorug02G0149000 Rorug02G0412000 Rorug04G0124600
rosa_samantha	Rh2AG198300 Rh2AG472100 Rh2BG211100 Rh2BG484200 Rh2CG202900 Rh2CG219800 Rh2CG458000 Rh2DG205900 Rh2DG493400
rosa_wichuraiana	Rw2G015730 Rw2G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	202
Acc36I	ACCTGC	1 cut(s)	202
AccII	CGCG	3 cut(s)	16, 81, 375
AciI	CCGC	4 cut(s)	14, 223, 378, 381
AclWI	GGATC	4 cut(s)	117, 129, 267, 280
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	3 cut(s)	10, 69, 187
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AluBI	AGCT	4 cut(s)	24, 62, 93, 322
AluI	AGCT	4 cut(s)	24, 62, 93, 322
Alw21I	GWGCWC	2 cut(s)	26, 95
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	4 cut(s)	117, 129, 267, 280
ArsI	GACNNNNNNTTYG	2 cut(s)	114, 146
AspLEI	GCGC	2 cut(s)	81, 377
AsuHPI	GGTGA	2 cut(s)	217, 244
AsuII	TTCGAA	1 cut(s)	302
BamHI	GGATCC	1 cut(s)	272
BanII	GRGCYC	2 cut(s)	26, 95
Bbv12I	GWGCWC	2 cut(s)	26, 95
BceAI	ACGGC	1 cut(s)	82
BcgI	CGANNNNNNTGC	4 cut(s)	155, 189, 200, 234
BclI	TGATCA	1 cut(s)	312
BcoDI	GTCTC	1 cut(s)	332
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	3 cut(s)	223, 378, 381
BlsI	GCNGC	3 cut(s)	224, 379, 382
BmiI	GGNNCC	2 cut(s)	274, 400
BmsI	GCATC	1 cut(s)	198
BplI	GAGNNNNNCTC	2 cut(s)	13, 45
Bpu14I	TTCGAA	1 cut(s)	302
BsaBI	GATNNNNATC	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	105, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse8I	GATNNNNATC	1 cut(s)	239
BseDI	CCNNGG	2 cut(s)	105, 276
BseJI	GATNNNNATC	1 cut(s)	239
BseLI	CCNNNNNNNGG	1 cut(s)	229
Bsh1236I	CGCG	3 cut(s)	16, 81, 375
BsiHKAI	GWGCWC	2 cut(s)	26, 95
BsiSI	CCGG	1 cut(s)	34
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	332
BsmBI	CGTCTC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	193
Bsp119I	TTCGAA	1 cut(s)	302
Bsp1286I	GDGCHC	2 cut(s)	26, 95
Bsp143I	GATC	4 cut(s)	109, 134, 272, 312
BspACI	CCGC	4 cut(s)	14, 223, 378, 381
BspFNI	CGCG	3 cut(s)	16, 81, 375
BspHI	TCATGA	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	274, 400
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	4 cut(s)	117, 129, 267, 280
BspQI	GCTCTTC	1 cut(s)	31
BspT104I	TTCGAA	1 cut(s)	302
BssECI	CCNNGG	2 cut(s)	105, 276
BssMI	GATC	4 cut(s)	109, 134, 272, 312
BssT1I	CCWWGG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	2 cut(s)	31, 187
BstBI	TTCGAA	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	318
BstDSI	CCRYGG	1 cut(s)	276
BstFNI	CGCG	3 cut(s)	16, 81, 375
BstHHI	GCGC	2 cut(s)	81, 377
BstKTI	GATC	4 cut(s)	112, 137, 275, 315
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	4 cut(s)	109, 134, 272, 312
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 78, 355
BstUI	CGCG	3 cut(s)	16, 81, 375
BstX2I	RGATCY	3 cut(s)	109, 134, 272
BstYI	RGATCY	3 cut(s)	109, 134, 272
BtgI	CCRYGG	1 cut(s)	276
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	95
CciI	TCATGA	1 cut(s)	87
CfoI	GCGC	2 cut(s)	81, 377
CseI	GACGC	1 cut(s)	381
CviAII	CATG	3 cut(s)	88, 139, 424
CviJI	RGCY	7 cut(s)	24, 50, 62, 93, 322, 365, 413
CviKI_1	RGCY	7 cut(s)	24, 50, 62, 93, 322, 365, 413
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	4 cut(s)	111, 136, 274, 314
DpnII	GATC	4 cut(s)	109, 134, 272, 312
Eam1104I	CTCTTC	2 cut(s)	31, 187
EarI	CTCTTC	2 cut(s)	31, 187
Ecl136II	GAGCTC	2 cut(s)	24, 93
Eco130I	CCWWGG	1 cut(s)	105
Eco24I	GRGCYC	2 cut(s)	26, 95
Eco53kI	GAGCTC	2 cut(s)	24, 93
EcoICRI	GAGCTC	2 cut(s)	24, 93
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	2 cut(s)	26, 95
ErhI	CCWWGG	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	332
FaeI	CATG	3 cut(s)	91, 142, 427
FaiI	YATR	3 cut(s)	89, 140, 425
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	3 cut(s)	87, 138, 423
FbaI	TGATCA	1 cut(s)	312
Fnu4HI	GCNGC	3 cut(s)	223, 378, 381
FriOI	GRGCYC	2 cut(s)	26, 95
Fsp4HI	GCNGC	3 cut(s)	223, 378, 381
GlaI	GCGC	2 cut(s)	80, 376
GluI	GCNGC	3 cut(s)	223, 378, 381
HapII	CCGG	1 cut(s)	34
HgaI	GACGC	1 cut(s)	381
HhaI	GCGC	2 cut(s)	81, 377
Hin1II	CATG	3 cut(s)	91, 142, 427
Hin6I	GCGC	2 cut(s)	79, 375
HinP1I	GCGC	2 cut(s)	79, 375
HincII	GTYRAC	2 cut(s)	268, 283
HindII	GTYRAC	2 cut(s)	268, 283
HinfI	GANTC	4 cut(s)	145, 235, 249, 291
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	2 cut(s)	217, 244
Hpy166II	GTNNAC	2 cut(s)	268, 283
Hpy188I	TCNGA	2 cut(s)	134, 290
Hpy188III	TCNNGA	3 cut(s)	88, 244, 329
Hpy8I	GTNNAC	2 cut(s)	268, 283
Hpy99I	CGWCG	2 cut(s)	161, 290
HpyAV	CCTTC	5 cut(s)	40, 75, 191, 196, 388
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	4 cut(s)	129, 182, 285, 432
HpyCH4V	TGCA	2 cut(s)	166, 211
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 78, 355
HpyF3I	CTNAG	1 cut(s)	318
HpySE526I	ACGT	4 cut(s)	129, 182, 285, 432
Hsp92II	CATG	3 cut(s)	91, 142, 427
HspAI	GCGC	2 cut(s)	79, 375
Ksp22I	TGATCA	1 cut(s)	312
Kzo9I	GATC	4 cut(s)	109, 134, 272, 312
LguI	GCTCTTC	1 cut(s)	31
LmnI	GCTCC	3 cut(s)	67, 327, 355
LpnPI	CCDG	3 cut(s)	28, 47, 197
LweI	GCATC	1 cut(s)	198
MaeII	ACGT	4 cut(s)	129, 182, 285, 432
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	4 cut(s)	111, 136, 274, 314
MboI	GATC	4 cut(s)	109, 134, 272, 312
MboII	GAAGA	4 cut(s)	18, 49, 204, 428
MflI	RGATCY	3 cut(s)	109, 134, 272
MhlI	GDGCHC	2 cut(s)	26, 95
MlyI	GAGTC	1 cut(s)	300
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	1 cut(s)	69
MspI	CCGG	1 cut(s)	34
MvnI	CGCG	3 cut(s)	16, 81, 375
MwoI	GCNNNNNNNGC	3 cut(s)	30, 78, 355
NdeII	GATC	4 cut(s)	109, 134, 272, 312
NlaIII	CATG	3 cut(s)	91, 142, 427
NlaIV	GGNNCC	2 cut(s)	274, 400
NspV	TTCGAA	1 cut(s)	302
PagI	TCATGA	1 cut(s)	87
PaqCI	CACCTGC	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	31
PfeI	GAWTC	3 cut(s)	145, 235, 249
PkrI	GCNGC	3 cut(s)	224, 379, 382
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
Psp124BI	GAGCTC	2 cut(s)	26, 95
PspN4I	GGNNCC	2 cut(s)	274, 400
PsuI	RGATCY	3 cut(s)	109, 134, 272
SacI	GAGCTC	2 cut(s)	26, 95
SapI	GCTCTTC	1 cut(s)	31
SatI	GCNGC	3 cut(s)	223, 378, 381
Sau3AI	GATC	4 cut(s)	109, 134, 272, 312
SchI	GAGTC	1 cut(s)	300
SduI	GDGCHC	2 cut(s)	26, 95
SfaNI	GCATC	1 cut(s)	198
SfuI	TTCGAA	1 cut(s)	302
SsiI	CCGC	4 cut(s)	14, 223, 378, 381
SstI	GAGCTC	2 cut(s)	26, 95
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	4 cut(s)	132, 185, 288, 435
TaqI	TCGA	3 cut(s)	243, 302, 330
TauI	GCSGC	3 cut(s)	225, 380, 383
TfiI	GAWTC	3 cut(s)	145, 235, 249
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	3 cut(s)	104, 285, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.