Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002325

Physical Location & Seq

Genomic Coordinates Reverse (-)

21742303 .. 21742584

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG219800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGCCGGTGAGCAAGGACGACGAGGTCCAGGTCGTGCGTGGGACCTACAAGGGCCAGGAGGGCAAGGTCGTCCGGGTCTACCACCGTAAGGTCACCCGCGAGAAGGTCAATGGCTCCACGGTCGACATCGGAATCAACCCCTCCAAGGTTTTGATCACTAAGCTCAGGCTGGACAAGGACAGCAAGTTGCTGCTGGACCGCAAGGCCAAGGGCAGAGCTGCCGCCGATAAGGACAAAGGCACCAAGTTGACGGCAGGGGACATCATGCAGAACGTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L26

Protein Analysis

93

Amino Acids

10.29

Weight (kDa)

9.89

Isoelectric Point (pI)

-0.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KOW	PF00467	5 - 31	7.3e-07	KOW motif
Ribosomal_L26	PF16906	24 - 68	2.4e-12	Ribosomal proteins L26 eukaryotic, L24P archaeal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49910 AT5G67510
fragaria_vesca	FvH4_1g17640 FvH4_5g24274 FvH4_6g36980
malus_domestica	MD02G1185200.v1.1 MD06G1158400.v1.1 MD12G1060600.v1.1 MD12G1243600.v1.1 MD14G1120400.v1.1 MD16G1170200.v1.1
prunus_persica	Prupe.3G002900_v2.0.a1 Prupe.6G221600_v2.0.a1
pyrus_communis	pycom02g15010 pycom06g14140 pycom14g13750
rosa_chinensis	RchiOBHm_Chr2g0107961 RchiOBHm_Chr2g0110121 RchiOBHm_Chr2g0149501
rosa_laevigata	RLG00000017629 RLG00000020414
rosa_multiflora	Rmu_sc0001484.1_g000030 Rmu_sc0005278.1_g000014 Rmu_sc0006867.1_g000007 Rmu_sc0008619.1_g000004
rosa_roxburghii	Rroxscaffold_2G00094390 Rroxscaffold_2G00098050 Rroxscaffold_2G00135780
rosa_rugosa	Rorug02G0149000 Rorug02G0412000 Rorug04G0124600
rosa_samantha	Rh2AG198300 Rh2AG472100 Rh2BG211100 Rh2BG484200 Rh2CG202900 Rh2CG219800 Rh2CG458000 Rh2DG205900 Rh2DG493400
rosa_wichuraiana	Rw2G015730 Rw2G038480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	23
AccB1I	GGYRCC	1 cut(s)	239
AccI	GTMKAC	2 cut(s)	78, 123
AccII	CGCG	1 cut(s)	99
AciI	CCGC	3 cut(s)	97, 199, 222
AfiI	CCNNNNNNNGG	3 cut(s)	88, 103, 145
AjnI	CCWGG	2 cut(s)	27, 54
AluBI	AGCT	2 cut(s)	163, 218
AluI	AGCT	2 cut(s)	163, 218
AoxI	GGCC	2 cut(s)	52, 204
ApeKI	GCWGC	2 cut(s)	190, 218
AspS9I	GGNCC	4 cut(s)	25, 42, 52, 196
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	2 cut(s)	19, 85
AvaII	GGWCC	3 cut(s)	25, 42, 196
BanI	GGYRCC	1 cut(s)	239
BbvI	GCAGC	2 cut(s)	177, 205
BceAI	ACGGC	1 cut(s)	267
BciT130I	CCWGG	2 cut(s)	29, 56
BclI	TGATCA	1 cut(s)	153
BcnI	CCSGG	1 cut(s)	74
BglI	GCCNNNNNGGC	1 cut(s)	60
BisI	GCNGC	3 cut(s)	191, 219, 222
BlsI	GCNGC	3 cut(s)	192, 220, 223
Bme1390I	CCNGG	3 cut(s)	29, 56, 74
Bme18I	GGWCC	3 cut(s)	25, 42, 196
BmgT120I	GGNCC	4 cut(s)	25, 42, 52, 196
BmiI	GGNNCC	3 cut(s)	43, 115, 241
BmrFI	CCNGG	3 cut(s)	29, 56, 74
Bpu10I	CCTNAGC	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	74
BsaJI	CCNNGG	3 cut(s)	117, 144, 207
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 103, 145
Bse118I	RCCGGY	1 cut(s)	4
BseBI	CCWGG	2 cut(s)	29, 56
BseDI	CCNNGG	3 cut(s)	117, 144, 207
BseLI	CCNNNNNNNGG	3 cut(s)	88, 103, 145
BseMII	CTCAG	1 cut(s)	178
BseXI	GCAGC	2 cut(s)	177, 205
Bsh1236I	CGCG	1 cut(s)	99
Bsh1285I	CGRYCG	1 cut(s)	123
BshFI	GGCC	2 cut(s)	54, 206
BshNI	GGYRCC	1 cut(s)	239
BsiEI	CGRYCG	1 cut(s)	123
BsiSI	CCGG	2 cut(s)	5, 73
BslFI	GGGAC	2 cut(s)	55, 272
BslI	CCNNNNNNNGG	3 cut(s)	88, 103, 145
BsmFI	GGGAC	2 cut(s)	55, 272
BsnI	GGCC	2 cut(s)	54, 206
Bsp143I	GATC	1 cut(s)	153
BspACI	CCGC	3 cut(s)	97, 199, 222
BspANI	GGCC	2 cut(s)	54, 206
BspCNI	CTCAG	1 cut(s)	177
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	3 cut(s)	43, 115, 241
BspT107I	GGYRCC	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	3 cut(s)	117, 144, 207
BssMI	GATC	1 cut(s)	153
BssT1I	CCWWGG	2 cut(s)	144, 207
Bst2UI	CCWGG	2 cut(s)	29, 56
Bst4CI	ACNGT	2 cut(s)	86, 121
BstDEI	CTNAG	2 cut(s)	159, 164
BstDSI	CCRYGG	1 cut(s)	117
BstEII	GGTNACC	1 cut(s)	91
BstFNI	CGCG	1 cut(s)	99
BstKTI	GATC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	153
BstMCI	CGRYCG	1 cut(s)	123
BstMWI	GCNNNNNNNGC	1 cut(s)	60
BstNI	CCWGG	2 cut(s)	29, 56
BstPI	GGTNACC	1 cut(s)	91
BstSCI	CCNGG	3 cut(s)	27, 54, 72
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	2 cut(s)	177, 205
BsuRI	GGCC	2 cut(s)	54, 206
BtgI	CCRYGG	1 cut(s)	117
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	4 cut(s)	25, 42, 52, 196
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	6 cut(s)	54, 114, 163, 169, 206, 218
CviKI_1	RGCY	6 cut(s)	54, 114, 163, 169, 206, 218
DdeI	CTNAG	2 cut(s)	159, 164
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
Eco130I	CCWWGG	2 cut(s)	144, 207
Eco47I	GGWCC	3 cut(s)	25, 42, 196
Eco91I	GGTNACC	1 cut(s)	91
EcoO109I	RGGNCCY	1 cut(s)	42
EcoO65I	GGTNACC	1 cut(s)	91
EcoRII	CCWGG	2 cut(s)	27, 54
EcoT14I	CCWWGG	2 cut(s)	144, 207
ErhI	CCWWGG	2 cut(s)	144, 207
FaeI	CATG	1 cut(s)	268
FaiI	YATR	1 cut(s)	266
FaqI	GGGAC	2 cut(s)	55, 272
FatI	CATG	1 cut(s)	264
FauI	CCCGC	1 cut(s)	104
FbaI	TGATCA	1 cut(s)	153
FblI	GTMKAC	2 cut(s)	78, 123
Fnu4HI	GCNGC	3 cut(s)	191, 219, 222
Fsp4HI	GCNGC	3 cut(s)	191, 219, 222
GluI	GCNGC	3 cut(s)	191, 219, 222
HaeIII	GGCC	2 cut(s)	54, 206
HapII	CCGG	2 cut(s)	5, 73
Hin1II	CATG	1 cut(s)	268
HincII	GTYRAC	2 cut(s)	124, 249
HindII	GTYRAC	2 cut(s)	124, 249
HinfI	GANTC	1 cut(s)	132
HpaII	CCGG	2 cut(s)	5, 73
HphI	GGTGA	2 cut(s)	19, 85
Hpy166II	GTNNAC	3 cut(s)	79, 124, 249
Hpy188I	TCNGA	1 cut(s)	131
Hpy8I	GTNNAC	3 cut(s)	79, 124, 249
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	2 cut(s)	86, 121
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	1 cut(s)	268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	60
HpyF3I	CTNAG	2 cut(s)	159, 164
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	1 cut(s)	268
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	119
Lsp1109I	GCAGC	2 cut(s)	177, 205
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MnlI	CCTC	3 cut(s)	16, 52, 151
MspI	CCGG	2 cut(s)	5, 73
MspR9I	CCNGG	3 cut(s)	29, 56, 74
MvaI	CCWGG	2 cut(s)	29, 56
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	60
NciI	CCSGG	1 cut(s)	74
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	1 cut(s)	268
NlaIV	GGNNCC	3 cut(s)	43, 115, 241
NmuCI	GTSAC	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	132
PflFI	GACNNNGTC	1 cut(s)	23
PkrI	GCNGC	3 cut(s)	192, 220, 223
PpuMI	RGGWCCY	1 cut(s)	42
Psp5II	RGGWCCY	1 cut(s)	42
Psp6I	CCWGG	2 cut(s)	27, 54
PspEI	GGTNACC	1 cut(s)	91
PspGI	CCWGG	2 cut(s)	27, 54
PspN4I	GGNNCC	3 cut(s)	43, 115, 241
PspPI	GGNCC	4 cut(s)	25, 42, 52, 196
PspPPI	RGGWCCY	1 cut(s)	42
PsyI	GACNNNGTC	1 cut(s)	23
SalI	GTCGAC	1 cut(s)	122
SatI	GCNGC	3 cut(s)	191, 219, 222
Sau3AI	GATC	1 cut(s)	153
Sau96I	GGNCC	4 cut(s)	25, 42, 52, 196
ScrFI	CCNGG	3 cut(s)	29, 56, 74
SinI	GGWCC	3 cut(s)	25, 42, 196
SsiI	CCGC	3 cut(s)	97, 199, 222
StyD4I	CCNGG	3 cut(s)	27, 54, 72
StyI	CCWWGG	2 cut(s)	144, 207
TaaI	ACNGT	2 cut(s)	86, 121
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	1 cut(s)	123
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	2 cut(s)	190, 218
Tsp45I	GTSAC	1 cut(s)	91
Tth111I	GACNNNGTC	1 cut(s)	23
VpaK11BI	GGWCC	3 cut(s)	25, 42, 196
XcmI	CCANNNNNNNNNTGG	1 cut(s)	35
XmiI	GTMKAC	2 cut(s)	78, 123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.